Wall clock time and date at job start Wed Apr 1 2020 04:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37991 * 120.81827 * 2 1 4 4 C 1.39134 * 119.26586 * 179.73241 * 3 2 1 5 5 O 1.35498 * 119.52560 * 180.25454 * 4 3 2 6 6 N 1.32429 * 120.94491 * 0.55802 * 4 3 2 7 7 C 1.31646 * 121.80113 * 359.71766 * 6 4 3 8 8 C 1.50700 * 119.68721 * 180.02562 * 7 6 4 9 9 C 1.39563 * 120.62477 * 0.02562 * 7 6 4 10 10 C 1.47614 * 120.49547 * 180.02562 * 9 7 6 11 11 O 1.21586 * 119.99574 * 269.96957 * 10 9 7 12 12 N 1.34773 * 119.99973 * 89.97611 * 10 9 7 13 13 C 1.46504 * 119.99531 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46993 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47247 * 180.02562 * 14 13 12 16 16 C 1.29449 * 117.69465 * 94.99811 * 15 14 13 17 17 C 1.50326 * 123.64870 * 180.85932 * 16 15 14 18 18 N 1.47007 * 109.16490 * 349.02140 * 17 16 15 19 19 C 1.36938 * 121.37499 * 222.96898 * 18 17 16 20 20 H 1.08001 * 119.99712 * 155.97394 * 19 18 17 21 21 C 1.38812 * 120.00143 * 335.97123 * 19 18 17 22 22 N 1.31615 * 119.99893 * 344.51701 * 21 19 18 23 23 Si 1.86801 * 119.99906 * 164.51207 * 21 19 18 24 24 H 1.48494 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46826 * 120.00527 * 23 21 19 26 26 H 1.48502 * 109.46799 * 239.99944 * 23 21 19 27 27 C 1.47337 * 117.25037 * 42.95014 * 18 17 16 28 28 C 1.49966 * 117.68785 * 274.74050 * 15 14 13 29 29 H 1.08998 * 109.47417 * 269.71755 * 1 2 3 30 30 H 1.08998 * 109.47005 * 149.72056 * 1 2 3 31 31 H 1.09000 * 109.47663 * 29.72298 * 1 2 3 32 32 H 1.08000 * 120.37104 * 359.97438 * 3 2 1 33 33 H 0.96705 * 113.99624 * 270.29595 * 5 4 3 34 34 H 1.09004 * 109.47194 * 269.98038 * 8 7 6 35 35 H 1.09002 * 109.47170 * 29.97540 * 8 7 6 36 36 H 1.08996 * 109.47363 * 149.97846 * 8 7 6 37 37 H 0.96994 * 120.00188 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47275 * 300.00048 * 13 12 10 39 39 H 1.08996 * 109.46971 * 60.00404 * 13 12 10 40 40 H 1.09008 * 109.46653 * 300.00295 * 14 13 12 41 41 H 1.08999 * 109.46735 * 59.99897 * 14 13 12 42 42 H 1.07994 * 118.17654 * 0.87594 * 16 15 14 43 43 H 1.09007 * 109.52491 * 108.92610 * 17 16 15 44 44 H 1.08996 * 109.52236 * 229.11514 * 17 16 15 45 45 H 0.96997 * 120.00097 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.78004 * 57.80908 * 27 18 17 47 47 H 1.09003 * 109.77781 * 178.61821 * 27 18 17 48 48 H 1.09004 * 109.31501 * 281.28647 * 28 15 14 49 49 H 1.09002 * 109.32241 * 40.71570 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6048 1.1474 0.0057 5 8 4.3042 2.3079 0.0109 6 7 4.2547 -0.0064 0.0000 7 6 3.6204 -1.1600 -0.0057 8 6 4.4080 -2.4448 -0.0115 9 6 2.2255 -1.2043 -0.0064 10 6 1.5172 -2.4994 -0.0122 11 8 1.2254 -3.0279 -1.0676 12 7 1.1938 -3.0958 1.1523 13 6 0.4903 -4.3809 1.1464 14 6 0.2451 -4.8346 2.5870 15 6 -0.4780 -6.1568 2.5810 16 6 0.2351 -7.2329 2.6765 17 6 -0.3445 -8.6199 2.6652 18 7 -1.8060 -8.5333 2.7972 19 6 -2.4989 -9.3800 3.6208 20 1 -3.4627 -9.0864 4.0096 21 6 -1.9624 -10.6157 3.9559 22 7 -0.9568 -11.1063 3.2628 23 14 -2.6675 -11.5820 5.3906 24 1 -3.7847 -10.8175 6.0010 25 1 -3.1717 -12.8917 4.9051 26 1 -1.6070 -11.8053 6.4058 27 6 -2.4946 -7.4977 2.0072 28 6 -1.9734 -6.1327 2.4708 29 1 -0.3634 -0.0051 1.0276 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3634 0.8924 -0.5095 32 1 1.6935 2.1314 -0.0004 33 1 4.5069 2.6489 -0.8710 34 1 4.5980 -2.7499 -1.0405 35 1 5.3567 -2.2917 0.5031 36 1 3.8392 -3.2220 0.4988 37 1 1.4268 -2.6743 1.9942 38 1 -0.4648 -4.2699 0.6333 39 1 1.0965 -5.1245 0.6291 40 1 1.2002 -4.9454 3.1005 41 1 -0.3612 -4.0908 3.1039 42 1 1.3059 -7.1285 2.7697 43 1 -0.0921 -9.1126 1.7261 44 1 0.0633 -9.1919 3.4986 45 1 -0.5817 -11.9696 3.4971 46 1 -2.2799 -7.6383 0.9478 47 1 -3.5696 -7.5578 2.1776 48 1 -2.4027 -5.8901 3.4429 49 1 -2.2697 -5.3716 1.7490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161914916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:26 Heat of formation + Delta-G solvation = -38.744351 kcal Electronic energy + Delta-G solvation = -29401.755317 eV Core-core repulsion = 25328.539934 eV Total energy + Delta-G solvation = -4073.215383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.06858 -40.48666 -39.44644 -38.19281 -36.74874 -35.39796 -35.12064 -33.33793 -32.76821 -31.46670 -30.27035 -29.09257 -28.80100 -27.08646 -25.13053 -24.45660 -23.78955 -22.47203 -22.41989 -21.83924 -19.52903 -19.44172 -18.86646 -18.31702 -17.69071 -17.16551 -16.96536 -16.70615 -16.28806 -15.84913 -15.58893 -15.39433 -15.24301 -15.11483 -14.85062 -14.74102 -14.31842 -14.28707 -14.20498 -13.94458 -13.74724 -13.40263 -13.36437 -13.19270 -13.14016 -12.95071 -12.83223 -12.80550 -12.64202 -12.59842 -12.35824 -12.12654 -11.89601 -11.66369 -11.41883 -11.13342 -10.68890 -10.67216 -10.56181 -10.20029 -9.91649 -9.47103 -8.74336 -7.87731 -5.29699 -0.35971 0.02428 1.37380 1.42770 1.46407 1.47408 1.58277 2.07158 2.25990 2.51125 2.61397 3.29018 3.35240 3.43229 3.58237 3.69214 3.94100 3.98662 4.09797 4.12203 4.17789 4.27157 4.31432 4.37893 4.52321 4.55126 4.57640 4.60627 4.64522 4.70303 4.80074 4.88284 4.92831 4.95817 4.99145 5.04965 5.08195 5.11861 5.19488 5.25770 5.32728 5.38828 5.43535 5.52191 5.61765 5.89808 6.29831 6.34372 6.39291 6.52806 6.77624 7.06128 7.13820 7.84184 8.38709 9.20907 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.001819 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.567150 B =15390.244981 C =15810.441304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.013 3.987 3 C -0.189 4.189 4 C 0.328 3.672 5 O -0.488 6.488 6 N -0.532 5.532 7 C 0.186 3.814 8 C -0.112 4.112 9 C -0.208 4.208 10 C 0.578 3.422 11 O -0.570 6.570 12 N -0.704 5.704 13 C 0.131 3.869 14 C -0.079 4.079 15 C -0.119 4.119 16 C -0.174 4.174 17 C 0.206 3.794 18 N -0.615 5.615 19 C -0.255 4.255 20 H 0.072 0.928 21 C -0.058 4.058 22 N -0.942 5.942 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.134 3.866 28 C -0.087 4.087 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.424 0.576 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.002 0.998 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.018 0.982 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 29.598 -5.251 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.005 3.995 3 C -0.209 4.209 4 C 0.150 3.850 5 O -0.299 6.299 6 N -0.253 5.253 7 C 0.047 3.953 8 C -0.169 4.169 9 C -0.213 4.213 10 C 0.364 3.636 11 O -0.449 6.449 12 N -0.355 5.355 13 C 0.008 3.992 14 C -0.117 4.117 15 C -0.120 4.120 16 C -0.194 4.194 17 C 0.081 3.919 18 N -0.339 5.339 19 C -0.385 4.385 20 H 0.089 0.911 21 C -0.253 4.253 22 N -0.589 5.589 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.217 1.217 27 C 0.009 3.991 28 C -0.125 4.125 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.194 0.806 33 H 0.287 0.713 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.020 0.980 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.067 29.101 -5.368 30.672 hybrid contribution -0.637 -1.014 0.284 1.230 sum 7.431 28.087 -5.085 29.495 Atomic orbital electron populations 1.21020 0.87783 1.04486 1.04758 1.20484 0.98023 0.90442 0.90543 1.22135 0.93123 1.00254 1.05417 1.19527 0.87857 0.85048 0.92594 1.84675 1.75883 1.33154 1.36164 1.67007 1.42646 0.98475 1.17157 1.21188 0.89371 0.93534 0.91164 1.20889 1.00800 0.91049 1.04190 1.20627 0.94881 0.94214 1.11605 1.18016 0.77795 0.84008 0.83829 1.90836 1.55506 1.66077 1.32510 1.45951 1.58406 1.22632 1.08547 1.21278 0.96697 0.83680 0.97543 1.20811 1.01029 0.94747 0.95077 1.20559 0.95441 0.94226 1.01762 1.22819 0.99670 0.95400 1.01473 1.19355 0.83204 0.91534 0.97838 1.44436 1.02309 1.37293 1.49901 1.19576 1.03163 0.95321 1.20463 0.91071 1.25794 0.99964 0.97363 1.02139 1.70200 1.29188 1.18727 1.40746 0.85157 0.77779 0.78089 0.79148 1.18930 1.22039 1.21734 1.21202 0.96063 0.88750 0.93071 1.20750 0.92544 0.97630 1.01601 0.87895 0.92249 0.87903 0.80587 0.71338 0.89520 0.88731 0.90315 0.74736 0.91591 0.92694 0.89866 0.88746 0.86878 0.98031 0.92780 0.94186 0.96371 0.92314 0.91295 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.69 71.24 0.69 -0.62 16 2 C 0.01 0.19 5.95 -19.44 -0.12 0.07 16 3 C -0.19 -2.32 9.72 22.43 0.22 -2.10 16 4 C 0.33 5.29 7.74 84.82 0.66 5.94 16 5 O -0.49 -6.01 13.55 -87.99 -1.19 -7.20 16 6 N -0.53 -10.86 10.28 -295.89 -3.04 -13.91 16 7 C 0.19 3.69 6.82 42.91 0.29 3.98 16 8 C -0.11 -1.94 9.78 71.24 0.70 -1.24 16 9 C -0.21 -3.97 5.65 -20.00 -0.11 -4.08 16 10 C 0.58 12.82 4.32 86.72 0.37 13.19 16 11 O -0.57 -17.71 17.11 -3.99 -0.07 -17.77 16 12 N -0.70 -12.29 5.55 -466.18 -2.59 -14.88 16 13 C 0.13 2.80 5.66 86.38 0.49 3.29 16 14 C -0.08 -1.62 5.32 29.85 0.16 -1.46 16 15 C -0.12 -3.68 5.11 -15.13 -0.08 -3.76 16 16 C -0.17 -6.53 9.47 27.11 0.26 -6.27 16 17 C 0.21 10.24 5.23 85.42 0.45 10.69 16 18 N -0.62 -31.51 3.01 -703.01 -2.11 -33.62 16 19 C -0.26 -14.21 9.71 84.03 0.82 -13.40 16 20 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16 21 C -0.06 -3.29 5.01 84.86 0.43 -2.87 16 22 N -0.94 -56.68 11.08 21.65 0.24 -56.44 16 23 Si 0.97 45.34 29.58 68.60 2.03 47.37 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 C 0.13 5.54 6.59 86.32 0.57 6.11 16 28 C -0.09 -2.74 5.95 29.72 0.18 -2.57 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.90 7.18 -2.39 -0.02 0.88 16 31 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 32 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.42 0.92 9.06 -74.05 -0.67 0.25 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.33 7.07 -2.39 -0.02 1.31 16 37 H 0.42 4.96 8.46 -92.71 -0.78 4.18 16 38 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.54 7.78 -2.38 -0.02 1.52 16 41 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 42 H 0.11 3.68 7.73 -2.91 -0.02 3.65 16 43 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 44 H 0.05 3.03 6.41 -2.39 -0.02 3.01 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -77.59 404.50 -1.25 -78.83 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.47 Total: 12.70 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.96 Total: 4.93 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -7.50 Total: -118.85 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.26 Total: -24.98 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.59 -1.25 -78.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161914916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.091 kcal (2) G-P(sol) polarization free energy of solvation -77.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds