Wall clock time and date at job start Wed Apr 1 2020 03:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38673 * 120.79368 * 2 1 4 4 C 1.38184 * 119.16265 * 180.27020 * 3 2 1 5 5 N 1.31883 * 120.76531 * 359.71149 * 4 3 2 6 6 C 1.31855 * 121.72686 * 0.02562 * 5 4 3 7 7 C 1.38226 * 120.76292 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41656 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47102 * 213.12920 * 8 7 6 10 10 C 1.53002 * 109.46667 * 93.13257 * 8 7 6 11 11 N 1.46498 * 109.47061 * 333.13219 * 8 7 6 12 12 C 1.34782 * 119.99587 * 208.77453 * 11 8 7 13 13 O 1.21348 * 119.99842 * 359.97438 * 12 11 8 14 14 C 1.49447 * 119.99534 * 180.02562 * 12 11 8 15 15 O 1.21344 * 120.00739 * 353.51394 * 14 12 11 16 16 N 1.34782 * 119.99433 * 173.51720 * 14 12 11 17 17 C 1.46923 * 120.63561 * 351.25830 * 16 14 12 18 18 C 1.53188 * 108.89771 * 233.56453 * 17 16 14 19 19 C 1.53082 * 109.29238 * 305.57591 * 18 17 16 20 20 C 1.53045 * 109.65697 * 61.15189 * 19 18 17 21 21 H 1.09000 * 109.49354 * 58.64958 * 20 19 18 22 22 C 1.50701 * 109.49675 * 178.74531 * 20 19 18 23 23 H 1.07996 * 119.99747 * 359.84432 * 22 20 19 24 24 C 1.37871 * 120.00055 * 179.83927 * 22 20 19 25 25 N 1.31517 * 119.99927 * 0.02562 * 24 22 20 26 26 Si 1.86795 * 120.00029 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47293 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46956 * 119.99883 * 26 24 22 29 29 H 1.48501 * 109.47309 * 240.00031 * 26 24 22 30 30 C 1.46931 * 120.62713 * 171.28653 * 16 14 12 31 31 H 1.09001 * 109.46923 * 270.29140 * 1 2 3 32 32 H 1.09004 * 109.46653 * 30.28758 * 1 2 3 33 33 H 1.09001 * 109.47291 * 150.28868 * 1 2 3 34 34 H 1.07997 * 120.41811 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.61608 * 179.72671 * 4 3 2 36 36 H 1.07997 * 119.61577 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.47227 * 59.99816 * 10 8 7 38 38 H 1.09008 * 109.46919 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.47085 * 299.99674 * 10 8 7 40 40 H 0.96996 * 120.00348 * 28.77528 * 11 8 7 41 41 H 1.09005 * 109.58060 * 353.42388 * 17 16 14 42 42 H 1.09002 * 109.58766 * 113.69851 * 17 16 14 43 43 H 1.08994 * 109.49872 * 65.38213 * 18 17 16 44 44 H 1.08996 * 109.49953 * 185.48588 * 18 17 16 45 45 H 1.09003 * 109.34524 * 301.13001 * 19 18 17 46 46 H 1.08988 * 109.43855 * 181.23580 * 19 18 17 47 47 H 0.96997 * 119.99935 * 179.97438 * 25 24 22 48 48 H 1.08998 * 109.58255 * 246.15305 * 30 16 14 49 49 H 1.09000 * 109.58510 * 6.43400 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0057 5 7 4.2403 -0.0001 -0.0054 6 6 3.5983 -1.1517 -0.0002 7 6 2.2166 -1.1909 0.0057 8 6 1.4907 -2.5116 0.0122 9 1 0.5592 -2.4170 -0.5458 10 6 1.1821 -2.9167 1.4550 11 7 2.3327 -3.5346 -0.6128 12 6 1.7648 -4.5826 -1.2419 13 8 0.5561 -4.6790 -1.2901 14 6 2.6238 -5.6265 -1.8790 15 8 3.8262 -5.4726 -1.9336 16 7 2.0627 -6.7390 -2.3932 17 6 0.6407 -7.0325 -2.1690 18 6 0.5114 -8.4418 -1.5828 19 6 1.2250 -9.4385 -2.4997 20 6 2.7110 -9.0834 -2.5888 21 1 3.1497 -9.1017 -1.5911 22 6 3.4156 -10.0846 -3.4674 23 1 2.8600 -10.8950 -3.9156 24 6 4.7695 -9.9659 -3.6992 25 7 5.4462 -8.9792 -3.1531 26 14 5.6428 -11.2065 -4.7889 27 1 4.6645 -12.2110 -5.2780 28 1 6.2524 -10.5052 -5.9474 29 1 6.7057 -11.8893 -4.0084 30 6 2.8619 -7.6816 -3.1879 31 1 -0.3633 0.0052 1.0277 32 1 -0.3633 0.8875 -0.5183 33 1 -0.3634 -0.8926 -0.5093 34 1 1.6968 2.1377 -0.0004 35 1 4.1584 2.0753 -0.0102 36 1 4.1584 -2.0751 0.0003 37 1 0.5557 -2.1556 1.9200 38 1 0.6575 -3.8723 1.4598 39 1 2.1137 -3.0113 2.0130 40 1 3.2989 -3.4578 -0.5739 41 1 0.2234 -6.3066 -1.4710 42 1 0.1030 -6.9798 -3.1158 43 1 0.9692 -8.4680 -0.5940 44 1 -0.5427 -8.7075 -1.5033 45 1 0.7812 -9.3957 -3.4944 46 1 1.1157 -10.4450 -2.0963 47 1 6.3987 -8.8959 -3.3159 48 1 2.5059 -7.6843 -4.2181 49 1 3.9098 -7.3827 -3.1643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261704188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:57 Heat of formation + Delta-G solvation = -26.337556 kcal Electronic energy + Delta-G solvation = -30620.889378 eV Core-core repulsion = 26548.211994 eV Total energy + Delta-G solvation = -4072.677384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10052 -40.29226 -38.43083 -36.87994 -36.21056 -34.27036 -33.27943 -31.87875 -31.61417 -29.94119 -29.75372 -28.22960 -26.07756 -25.02938 -24.65514 -23.37490 -22.31621 -21.80488 -21.07869 -20.17263 -18.93237 -17.49431 -17.30542 -16.67666 -16.33838 -16.17180 -15.61002 -15.59537 -15.19050 -14.82971 -14.71778 -14.50662 -14.02395 -13.76808 -13.68672 -13.38842 -13.28146 -13.21093 -13.02841 -12.91956 -12.78248 -12.58187 -12.50216 -12.17239 -12.00294 -11.79571 -11.42798 -11.39569 -10.99512 -10.69236 -10.45700 -10.31460 -10.13844 -9.89694 -9.79952 -9.71872 -9.47428 -9.27069 -9.21107 -9.12230 -8.61956 -8.45554 -7.83478 -6.01519 -4.10155 0.74372 0.90187 1.74876 2.60172 3.29475 3.37975 3.41111 3.44584 3.59573 3.86847 4.00852 4.28248 4.34199 4.41841 4.47216 4.61179 4.66567 4.92172 4.97374 5.06963 5.10345 5.16903 5.28533 5.33515 5.41145 5.49574 5.55256 5.60511 5.64721 5.73112 5.84060 5.88596 5.96080 6.10945 6.22788 6.34342 6.35790 6.49706 6.58900 6.69877 6.83559 6.97640 7.00342 7.15691 7.18292 7.58438 7.67380 7.81050 7.90166 7.95216 8.14181 8.34773 8.55763 8.94110 9.55582 11.03752 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002540 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.654387 B =11020.005646 C =12250.116116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.030 4.030 3 C -0.172 4.172 4 C 0.099 3.901 5 N -0.481 5.481 6 C 0.112 3.888 7 C -0.147 4.147 8 C 0.184 3.816 9 H 0.108 0.892 10 C -0.159 4.159 11 N -0.704 5.704 12 C 0.514 3.486 13 O -0.516 6.516 14 C 0.493 3.507 15 O -0.519 6.519 16 N -0.568 5.568 17 C 0.072 3.928 18 C -0.133 4.133 19 C -0.113 4.113 20 C 0.041 3.959 21 H 0.030 0.970 22 C -0.519 4.519 23 H 0.060 0.940 24 C 0.062 3.938 25 N -0.881 5.881 26 Si 0.893 3.107 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 C 0.108 3.892 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.126 0.874 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.263 0.737 48 H 0.048 0.952 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 19.526 8.700 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.039 4.039 3 C -0.192 4.192 4 C -0.057 4.057 5 N -0.190 5.190 6 C -0.046 4.046 7 C -0.149 4.149 8 C 0.079 3.921 9 H 0.126 0.874 10 C -0.217 4.217 11 N -0.359 5.359 12 C 0.297 3.703 13 O -0.393 6.393 14 C 0.274 3.726 15 O -0.396 6.396 16 N -0.300 5.300 17 C -0.051 4.051 18 C -0.172 4.172 19 C -0.150 4.150 20 C 0.022 3.978 21 H 0.048 0.952 22 C -0.558 4.558 23 H 0.078 0.922 24 C -0.141 4.141 25 N -0.518 5.518 26 Si 0.720 3.280 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.210 1.210 30 C -0.012 4.012 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.143 0.857 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.255 19.593 8.616 23.734 hybrid contribution 0.122 -0.612 -0.646 0.898 sum -10.134 18.981 7.970 22.946 Atomic orbital electron populations 1.20949 0.90019 1.03878 1.03220 1.20110 0.96860 0.92077 0.94811 1.22030 0.95639 0.98493 1.03034 1.22819 0.91810 0.96357 0.94726 1.67732 1.41004 0.98324 1.11904 1.22563 0.90933 0.96540 0.94542 1.20798 0.95437 0.95106 1.03587 1.19826 0.94088 0.83012 0.95141 0.87445 1.22171 1.02558 1.02603 0.94366 1.46012 1.11466 1.23216 1.55180 1.20797 0.88390 0.82937 0.78148 1.90464 1.14668 1.74834 1.59352 1.19767 0.87813 0.83561 0.81462 1.90784 1.13788 1.77777 1.57217 1.48434 1.11592 1.20491 1.49519 1.22676 0.81207 0.98649 1.02528 1.21964 0.99824 0.95489 0.99880 1.21663 0.98319 0.97246 0.97807 1.18960 0.90103 0.91408 0.97349 0.95189 1.21120 0.93125 1.11156 1.30374 0.92214 1.25064 0.97622 0.95595 0.95821 1.69890 1.08368 1.30250 1.43302 0.86527 0.79649 0.81375 0.80408 1.19784 1.20972 1.20992 1.22495 0.98058 0.89110 0.91501 0.90074 0.90743 0.90368 0.84585 0.82620 0.82805 0.91234 0.91033 0.91840 0.74998 0.85733 0.92192 0.92439 0.92088 0.93189 0.93041 0.92681 0.93327 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.67 36.00 0.35 -0.37 16 2 C -0.03 -0.25 5.92 -104.32 -0.62 -0.86 16 3 C -0.17 -1.27 9.82 -39.44 -0.39 -1.66 16 4 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 5 N -0.48 -5.52 10.36 -13.25 -0.14 -5.66 16 6 C 0.11 1.22 10.41 -17.55 -0.18 1.04 16 7 C -0.15 -1.42 5.06 -104.48 -0.53 -1.95 16 8 C 0.18 1.86 2.44 -69.08 -0.17 1.69 16 9 H 0.11 1.11 5.51 -51.93 -0.29 0.82 16 10 C -0.16 -1.40 9.50 37.16 0.35 -1.04 16 11 N -0.70 -8.99 4.95 -55.36 -0.27 -9.27 16 12 C 0.51 8.21 7.74 -11.58 -0.09 8.12 16 13 O -0.52 -8.32 12.78 5.50 0.07 -8.25 16 14 C 0.49 9.84 7.73 -11.58 -0.09 9.75 16 15 O -0.52 -11.81 15.93 5.50 0.09 -11.72 16 16 N -0.57 -11.72 2.97 -173.28 -0.52 -12.24 16 17 C 0.07 1.25 5.98 -3.71 -0.02 1.23 16 18 C -0.13 -2.30 6.09 -26.59 -0.16 -2.46 16 19 C -0.11 -2.29 5.10 -26.67 -0.14 -2.43 16 20 C 0.04 1.01 2.26 -91.65 -0.21 0.81 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.52 -14.00 8.56 -34.44 -0.29 -14.30 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 24 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 25 N -0.88 -25.35 11.39 55.43 0.63 -24.72 16 26 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 C 0.11 2.61 5.41 -3.71 -0.02 2.59 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.34 8.10 -51.93 -0.42 -0.09 16 33 H 0.08 0.49 6.13 -51.93 -0.32 0.17 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.15 1.59 6.16 -52.49 -0.32 1.27 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.41 5.16 5.84 -40.82 -0.24 4.92 16 41 H 0.13 2.07 4.31 -54.80 -0.24 1.84 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 1.02 8.14 -51.94 -0.42 0.60 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 48 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.12 3.43 5.13 -51.93 -0.27 3.17 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -31.79 390.33 -8.90 -40.69 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.13 Total: 6.73 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.49 Total: 2.43 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.30 Total: -51.88 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.16 Total: -19.97 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.79 -8.90 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261704188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.351 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds