Wall clock time and date at job start Wed Apr 1 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38673 * 120.79368 * 2 1 4 4 C 1.38184 * 119.16265 * 180.27020 * 3 2 1 5 5 N 1.31883 * 120.76531 * 359.71149 * 4 3 2 6 6 C 1.31855 * 121.72686 * 0.02562 * 5 4 3 7 7 C 1.38226 * 120.76292 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41656 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47102 * 213.12920 * 8 7 6 10 10 C 1.53002 * 109.46667 * 93.13257 * 8 7 6 11 11 N 1.46498 * 109.47061 * 333.13219 * 8 7 6 12 12 C 1.34782 * 119.99587 * 208.77453 * 11 8 7 13 13 O 1.21348 * 119.99842 * 359.97438 * 12 11 8 14 14 C 1.49447 * 119.99534 * 180.02562 * 12 11 8 15 15 O 1.21344 * 120.00739 * 353.51394 * 14 12 11 16 16 N 1.34782 * 119.99433 * 173.51720 * 14 12 11 17 17 C 1.46923 * 120.63561 * 351.25830 * 16 14 12 18 18 C 1.53188 * 108.89771 * 233.56453 * 17 16 14 19 19 C 1.53082 * 109.29238 * 305.57591 * 18 17 16 20 20 C 1.53045 * 109.65697 * 61.15189 * 19 18 17 21 21 H 1.09000 * 109.49354 * 58.64958 * 20 19 18 22 22 C 1.50701 * 109.49675 * 178.74531 * 20 19 18 23 23 H 1.07996 * 119.99747 * 359.84432 * 22 20 19 24 24 C 1.37871 * 120.00055 * 179.83927 * 22 20 19 25 25 N 1.31517 * 119.99927 * 0.02562 * 24 22 20 26 26 Si 1.86795 * 120.00029 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47293 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46956 * 119.99883 * 26 24 22 29 29 H 1.48501 * 109.47309 * 240.00031 * 26 24 22 30 30 C 1.46931 * 120.62713 * 171.28653 * 16 14 12 31 31 H 1.09001 * 109.46923 * 270.29140 * 1 2 3 32 32 H 1.09004 * 109.46653 * 30.28758 * 1 2 3 33 33 H 1.09001 * 109.47291 * 150.28868 * 1 2 3 34 34 H 1.07997 * 120.41811 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.61608 * 179.72671 * 4 3 2 36 36 H 1.07997 * 119.61577 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.47227 * 59.99816 * 10 8 7 38 38 H 1.09008 * 109.46919 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.47085 * 299.99674 * 10 8 7 40 40 H 0.96996 * 120.00348 * 28.77528 * 11 8 7 41 41 H 1.09005 * 109.58060 * 353.42388 * 17 16 14 42 42 H 1.09002 * 109.58766 * 113.69851 * 17 16 14 43 43 H 1.08994 * 109.49872 * 65.38213 * 18 17 16 44 44 H 1.08996 * 109.49953 * 185.48588 * 18 17 16 45 45 H 1.09003 * 109.34524 * 301.13001 * 19 18 17 46 46 H 1.08988 * 109.43855 * 181.23580 * 19 18 17 47 47 H 0.96997 * 119.99935 * 179.97438 * 25 24 22 48 48 H 1.08998 * 109.58255 * 246.15305 * 30 16 14 49 49 H 1.09000 * 109.58510 * 6.43400 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0057 5 7 4.2403 -0.0001 -0.0054 6 6 3.5983 -1.1517 -0.0002 7 6 2.2166 -1.1909 0.0057 8 6 1.4907 -2.5116 0.0122 9 1 0.5592 -2.4170 -0.5458 10 6 1.1821 -2.9167 1.4550 11 7 2.3327 -3.5346 -0.6128 12 6 1.7648 -4.5826 -1.2419 13 8 0.5561 -4.6790 -1.2901 14 6 2.6238 -5.6265 -1.8790 15 8 3.8262 -5.4726 -1.9336 16 7 2.0627 -6.7390 -2.3932 17 6 0.6407 -7.0325 -2.1690 18 6 0.5114 -8.4418 -1.5828 19 6 1.2250 -9.4385 -2.4997 20 6 2.7110 -9.0834 -2.5888 21 1 3.1497 -9.1017 -1.5911 22 6 3.4156 -10.0846 -3.4674 23 1 2.8600 -10.8950 -3.9156 24 6 4.7695 -9.9659 -3.6992 25 7 5.4462 -8.9792 -3.1531 26 14 5.6428 -11.2065 -4.7889 27 1 4.6645 -12.2110 -5.2780 28 1 6.2524 -10.5052 -5.9474 29 1 6.7057 -11.8893 -4.0084 30 6 2.8619 -7.6816 -3.1879 31 1 -0.3633 0.0052 1.0277 32 1 -0.3633 0.8875 -0.5183 33 1 -0.3634 -0.8926 -0.5093 34 1 1.6968 2.1377 -0.0004 35 1 4.1584 2.0753 -0.0102 36 1 4.1584 -2.0751 0.0003 37 1 0.5557 -2.1556 1.9200 38 1 0.6575 -3.8723 1.4598 39 1 2.1137 -3.0113 2.0130 40 1 3.2989 -3.4578 -0.5739 41 1 0.2234 -6.3066 -1.4710 42 1 0.1030 -6.9798 -3.1158 43 1 0.9692 -8.4680 -0.5940 44 1 -0.5427 -8.7075 -1.5033 45 1 0.7812 -9.3957 -3.4944 46 1 1.1157 -10.4450 -2.0963 47 1 6.3987 -8.8959 -3.3159 48 1 2.5059 -7.6843 -4.2181 49 1 3.9098 -7.3827 -3.1643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261704188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:56 Heat of formation + Delta-G solvation = -46.669013 kcal Electronic energy + Delta-G solvation = -30621.771016 eV Core-core repulsion = 26548.211994 eV Total energy + Delta-G solvation = -4073.559022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.16528 -41.37211 -39.84499 -38.52644 -37.24232 -35.28928 -34.89689 -33.49032 -32.60579 -31.58931 -30.67328 -28.78324 -27.70342 -26.84174 -25.54748 -24.52913 -23.55956 -23.14924 -22.00726 -21.53432 -20.51927 -18.94578 -18.36966 -18.21209 -17.53828 -17.33245 -17.01010 -16.65100 -16.47964 -16.31123 -15.71528 -15.63060 -15.46045 -15.04941 -14.91842 -14.65020 -14.47818 -14.40682 -14.08369 -13.90231 -13.82842 -13.60491 -13.51810 -13.46043 -13.16709 -12.97918 -12.90008 -12.67284 -12.47042 -12.29870 -12.15407 -12.08321 -11.73859 -11.63195 -11.14100 -10.98518 -10.59571 -10.55373 -10.42001 -10.36883 -10.15610 -9.97835 -9.55258 -8.11659 -6.28462 0.05606 0.24611 0.32880 1.29281 1.41005 1.42214 1.53871 2.10970 2.40647 2.51539 2.76531 3.15857 3.21976 3.33467 3.59760 3.77362 3.85931 3.91438 4.12044 4.16282 4.18451 4.30323 4.33534 4.48555 4.56693 4.60119 4.62854 4.72559 4.74678 4.78695 4.81391 4.82875 4.86703 4.98362 5.06739 5.14044 5.17473 5.23491 5.24730 5.26862 5.33330 5.39074 5.49178 5.57453 5.71949 5.84241 5.91765 5.95438 6.29243 6.40645 6.66844 6.83397 6.95988 6.98598 7.41520 8.92074 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002540 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.654387 B =11020.005646 C =12250.116116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.164 4.164 4 C 0.088 3.912 5 N -0.515 5.515 6 C 0.090 3.910 7 C -0.154 4.154 8 C 0.186 3.814 9 H 0.112 0.888 10 C -0.155 4.155 11 N -0.691 5.691 12 C 0.526 3.474 13 O -0.515 6.515 14 C 0.483 3.517 15 O -0.558 6.558 16 N -0.575 5.575 17 C 0.071 3.929 18 C -0.126 4.126 19 C -0.107 4.107 20 C 0.039 3.961 21 H -0.011 1.011 22 C -0.534 4.534 23 H 0.063 0.937 24 C 0.010 3.990 25 N -0.914 5.914 26 Si 0.958 3.042 27 H -0.262 1.262 28 H -0.282 1.282 29 H -0.283 1.283 30 C 0.121 3.879 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.412 0.588 41 H 0.140 0.860 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.261 0.739 48 H 0.045 0.955 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 20.983 9.038 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 C -0.184 4.184 4 C -0.068 4.068 5 N -0.225 5.225 6 C -0.067 4.067 7 C -0.156 4.156 8 C 0.083 3.917 9 H 0.130 0.870 10 C -0.212 4.212 11 N -0.345 5.345 12 C 0.308 3.692 13 O -0.393 6.393 14 C 0.266 3.734 15 O -0.437 6.437 16 N -0.307 5.307 17 C -0.050 4.050 18 C -0.163 4.163 19 C -0.144 4.144 20 C 0.020 3.980 21 H 0.008 0.992 22 C -0.572 4.572 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.552 5.552 26 Si 0.784 3.216 27 H -0.186 1.186 28 H -0.208 1.208 29 H -0.209 1.209 30 C -0.001 4.001 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.188 0.812 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.250 0.750 41 H 0.157 0.843 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.131 21.065 8.977 26.396 hybrid contribution 1.014 -0.955 -0.713 1.565 sum -12.116 20.110 8.264 24.890 Atomic orbital electron populations 1.21030 0.87974 1.04495 1.04461 1.20468 0.98309 0.91565 0.93634 1.22391 0.95100 0.99664 1.01208 1.23324 0.93017 0.96310 0.94120 1.67691 1.42236 0.99231 1.13306 1.22532 0.91706 0.96455 0.96017 1.20735 0.94900 0.95473 1.04519 1.20033 0.93555 0.82376 0.95746 0.86995 1.22149 1.02776 1.02942 0.93380 1.46049 1.11925 1.22643 1.53852 1.19857 0.87689 0.82896 0.78782 1.90442 1.13987 1.74965 1.59856 1.20537 0.87906 0.84086 0.80888 1.90758 1.15740 1.78622 1.58568 1.48457 1.12718 1.20278 1.49209 1.22926 0.79144 0.99213 1.03670 1.21936 1.01725 0.94280 0.98403 1.21558 0.95346 0.98367 0.99178 1.18898 0.92937 0.91554 0.94632 0.99242 1.21512 0.93651 1.11667 1.30409 0.91905 1.25884 0.98553 0.97305 0.97171 1.70073 1.08338 1.32016 1.44797 0.85500 0.78490 0.79166 0.78473 1.18552 1.20799 1.20862 1.21951 0.96548 0.89732 0.91873 0.88383 0.89026 0.90861 0.81219 0.80325 0.83745 0.88706 0.91896 0.92156 0.74974 0.84271 0.90826 0.93274 0.87972 0.92417 0.92733 0.93027 0.93663 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.67 71.23 0.69 -0.29 16 2 C -0.03 -0.43 5.92 -19.67 -0.12 -0.55 16 3 C -0.16 -1.97 9.82 22.36 0.22 -1.75 16 4 C 0.09 1.42 11.18 84.67 0.95 2.37 16 5 N -0.52 -11.85 10.36 -195.84 -2.03 -13.88 16 6 C 0.09 2.00 10.41 84.69 0.88 2.88 16 7 C -0.15 -2.82 5.06 -19.77 -0.10 -2.92 16 8 C 0.19 3.54 2.44 44.25 0.11 3.65 16 9 H 0.11 2.08 5.51 -2.39 -0.01 2.07 16 10 C -0.15 -2.46 9.50 71.98 0.68 -1.78 16 11 N -0.69 -17.71 4.95 -447.43 -2.22 -19.92 16 12 C 0.53 16.70 7.74 87.27 0.68 17.38 16 13 O -0.51 -15.78 12.78 -3.24 -0.04 -15.82 16 14 C 0.48 19.93 7.73 87.27 0.67 20.61 16 15 O -0.56 -26.94 15.93 -3.23 -0.05 -26.99 16 16 N -0.58 -24.20 2.97 -820.49 -2.44 -26.64 16 17 C 0.07 2.38 5.98 86.36 0.52 2.89 16 18 C -0.13 -4.09 6.09 30.68 0.19 -3.90 16 19 C -0.11 -4.27 5.10 30.64 0.16 -4.11 16 20 C 0.04 1.99 2.26 -11.46 -0.03 1.96 16 21 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 22 C -0.53 -29.44 8.56 25.60 0.22 -29.22 16 23 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 24 C 0.01 0.58 5.30 84.65 0.45 1.03 16 25 N -0.91 -55.02 11.39 21.45 0.24 -54.78 16 26 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 27 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 30 C 0.12 6.06 5.41 86.36 0.47 6.53 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.45 8.10 -2.38 -0.02 0.43 16 33 H 0.07 0.69 6.13 -2.39 -0.01 0.68 16 34 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 35 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.15 3.26 6.16 -2.91 -0.02 3.24 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.41 10.82 5.84 -92.71 -0.54 10.28 16 41 H 0.14 4.34 4.31 -47.94 -0.21 4.13 16 42 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.10 2.55 8.14 -2.39 -0.02 2.54 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.08 4.96 5.13 -2.39 -0.01 4.95 16 Total: -1.00 -72.57 390.33 2.36 -70.20 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.24 Total: 26.82 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.63 Total: 14.77 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -6.44 Total: -115.22 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.09 Total: -42.81 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.57 2.36 -70.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261704188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.536 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds