Wall clock time and date at job start Wed Apr 1 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38672 * 120.79133 * 2 1 4 4 C 1.38176 * 119.16365 * 180.27241 * 3 2 1 5 5 N 1.31886 * 120.76739 * 359.71791 * 4 3 2 6 6 C 1.31862 * 121.72321 * 0.02562 * 5 4 3 7 7 C 1.38226 * 120.76133 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.41532 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46943 * 144.99916 * 8 7 6 10 10 C 1.53004 * 109.47314 * 264.99932 * 8 7 6 11 11 N 1.46502 * 109.47211 * 25.00412 * 8 7 6 12 12 C 1.34782 * 120.00166 * 154.99813 * 11 8 7 13 13 O 1.21350 * 119.99528 * 359.97438 * 12 11 8 14 14 C 1.49446 * 120.00084 * 179.97438 * 12 11 8 15 15 O 1.21356 * 119.99803 * 353.37756 * 14 12 11 16 16 N 1.34768 * 120.00057 * 173.37736 * 14 12 11 17 17 C 1.46923 * 120.63140 * 353.06161 * 16 14 12 18 18 C 1.53197 * 108.77603 * 126.41596 * 17 16 14 19 19 C 1.53036 * 109.34037 * 54.62030 * 18 17 16 20 20 C 1.53043 * 109.53781 * 298.68543 * 19 18 17 21 21 H 1.09000 * 109.49772 * 301.34791 * 20 19 18 22 22 C 1.50699 * 109.49861 * 181.28187 * 20 19 18 23 23 H 1.08009 * 119.99826 * 0.06421 * 22 20 19 24 24 C 1.37874 * 120.00391 * 180.34183 * 22 20 19 25 25 N 1.31511 * 119.99935 * 359.72505 * 24 22 20 26 26 Si 1.86803 * 120.00371 * 179.72468 * 24 22 20 27 27 H 1.48501 * 109.46987 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47049 * 119.99668 * 26 24 22 29 29 H 1.48495 * 109.47162 * 239.99991 * 26 24 22 30 30 C 1.46927 * 120.63303 * 173.08900 * 16 14 12 31 31 H 1.09005 * 109.47182 * 270.28491 * 1 2 3 32 32 H 1.09004 * 109.47302 * 30.28379 * 1 2 3 33 33 H 1.08998 * 109.47397 * 150.28479 * 1 2 3 34 34 H 1.08003 * 120.41458 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.61754 * 179.72700 * 4 3 2 36 36 H 1.07994 * 119.61822 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.46895 * 300.00278 * 10 8 7 38 38 H 1.08994 * 109.46749 * 60.00427 * 10 8 7 39 39 H 1.09002 * 109.46487 * 179.97438 * 10 8 7 40 40 H 0.96996 * 120.00059 * 334.99435 * 11 8 7 41 41 H 1.08998 * 109.59171 * 246.19792 * 17 16 14 42 42 H 1.09003 * 109.58922 * 6.48999 * 17 16 14 43 43 H 1.08995 * 109.50150 * 174.58993 * 18 17 16 44 44 H 1.09009 * 109.49617 * 294.68452 * 18 17 16 45 45 H 1.08997 * 109.49188 * 178.64856 * 19 18 17 46 46 H 1.09001 * 109.43006 * 58.68768 * 19 18 17 47 47 H 0.97000 * 120.00590 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.59192 * 113.79627 * 30 16 14 49 49 H 1.08998 * 109.70190 * 353.44355 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0057 5 7 4.2403 0.0001 -0.0056 6 6 3.5983 -1.1517 -0.0005 7 6 2.2166 -1.1909 0.0054 8 6 1.4908 -2.5116 0.0118 9 1 0.5805 -2.4231 0.6049 10 6 1.1289 -2.9016 -1.4228 11 7 2.3551 -3.5410 0.5945 12 6 1.8108 -4.6335 1.1662 13 8 0.6048 -4.7642 1.1985 14 6 2.6925 -5.6838 1.7601 15 8 3.8963 -5.6142 1.6229 16 7 2.1508 -6.7083 2.4481 17 6 0.7137 -6.7283 2.7531 18 6 0.1233 -8.0529 2.2594 19 6 0.9108 -9.2163 2.8662 20 6 2.3704 -9.1383 2.4124 21 1 2.4153 -9.1731 1.3239 22 6 3.1380 -10.3019 2.9849 23 1 2.6353 -11.0258 3.6093 24 6 4.4834 -10.4393 2.7164 25 7 5.0956 -9.5579 1.9563 26 14 5.4366 -11.8775 3.4324 27 1 4.5243 -12.7194 4.2473 28 1 6.0083 -12.6908 2.3291 29 1 6.5351 -11.3652 4.2903 30 6 2.9862 -7.8261 2.9080 31 1 -0.3634 0.0051 1.0277 32 1 -0.3634 0.8874 -0.5182 33 1 -0.3634 -0.8925 -0.5094 34 1 1.6967 2.1377 -0.0004 35 1 4.1582 2.0754 -0.0103 36 1 4.1584 -2.0750 -0.0010 37 1 0.4859 -2.1357 -1.8563 38 1 2.0391 -2.9902 -2.0158 39 1 0.6044 -3.8571 -1.4181 40 1 3.3191 -3.4363 0.5689 41 1 0.5674 -6.6420 3.8298 42 1 0.2216 -5.8963 2.2495 43 1 -0.9208 -8.1221 2.5645 44 1 0.1888 -8.0976 1.1722 45 1 0.4778 -10.1604 2.5355 46 1 0.8650 -9.1572 3.9536 47 1 6.0420 -9.6548 1.7670 48 1 3.0253 -7.8292 3.9973 49 1 3.9941 -7.7209 2.5066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261704191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:09 Heat of formation + Delta-G solvation = -23.056239 kcal Electronic energy + Delta-G solvation = -30645.977958 eV Core-core repulsion = 26573.442863 eV Total energy + Delta-G solvation = -4072.535095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.12655 -40.32036 -38.42546 -36.90895 -36.22447 -34.29431 -33.27415 -31.86542 -31.62205 -29.94022 -29.73039 -28.27307 -26.07767 -25.03629 -24.62902 -23.38602 -22.33722 -21.78859 -21.09136 -20.22464 -18.86704 -17.56172 -17.32151 -16.69326 -16.32616 -16.13050 -15.76287 -15.47633 -15.11633 -14.83435 -14.77088 -14.56630 -14.02712 -13.85546 -13.74506 -13.43397 -13.26220 -13.17902 -13.03666 -12.90536 -12.70763 -12.62929 -12.58466 -12.10621 -11.94631 -11.73852 -11.49060 -11.38520 -11.00029 -10.69359 -10.45650 -10.28969 -10.07771 -9.90136 -9.82790 -9.73974 -9.53932 -9.23148 -9.21410 -9.12331 -8.54704 -8.42990 -7.84074 -6.02644 -4.10709 0.72634 0.88255 1.73467 2.58878 3.29271 3.37726 3.40922 3.42499 3.60422 3.86569 3.99374 4.27454 4.32590 4.41436 4.45231 4.64651 4.65213 4.93081 4.94257 5.05015 5.09537 5.14480 5.28082 5.33672 5.39495 5.48430 5.57332 5.65466 5.68252 5.70374 5.85678 5.88621 5.97676 6.08744 6.24806 6.32742 6.38436 6.57947 6.60470 6.73383 6.85359 6.98645 7.01768 7.16045 7.17387 7.58512 7.65628 7.81603 7.93001 7.94997 8.14354 8.34265 8.55269 8.93562 9.54995 11.02998 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002515 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.507115 B =11129.128204 C =12239.883651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.029 4.029 3 C -0.172 4.172 4 C 0.099 3.901 5 N -0.481 5.481 6 C 0.110 3.890 7 C -0.146 4.146 8 C 0.187 3.813 9 H 0.105 0.895 10 C -0.162 4.162 11 N -0.703 5.703 12 C 0.517 3.483 13 O -0.512 6.512 14 C 0.494 3.506 15 O -0.523 6.523 16 N -0.566 5.566 17 C 0.050 3.950 18 C -0.127 4.127 19 C -0.113 4.113 20 C 0.040 3.960 21 H 0.029 0.971 22 C -0.518 4.518 23 H 0.060 0.940 24 C 0.062 3.938 25 N -0.882 5.882 26 Si 0.893 3.107 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.283 1.283 30 C 0.108 3.892 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.412 0.588 41 H 0.054 0.946 42 H 0.143 0.857 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.263 0.737 48 H 0.048 0.952 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 21.549 -4.992 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.038 4.038 3 C -0.192 4.192 4 C -0.057 4.057 5 N -0.189 5.189 6 C -0.047 4.047 7 C -0.149 4.149 8 C 0.082 3.918 9 H 0.123 0.877 10 C -0.220 4.220 11 N -0.358 5.358 12 C 0.300 3.700 13 O -0.389 6.389 14 C 0.275 3.725 15 O -0.400 6.400 16 N -0.297 5.297 17 C -0.072 4.072 18 C -0.165 4.165 19 C -0.151 4.151 20 C 0.021 3.979 21 H 0.047 0.953 22 C -0.557 4.557 23 H 0.078 0.922 24 C -0.141 4.141 25 N -0.520 5.520 26 Si 0.721 3.279 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.209 1.209 30 C -0.012 4.012 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.250 0.750 41 H 0.073 0.927 42 H 0.160 0.840 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.384 21.508 -5.101 24.014 hybrid contribution 0.190 -0.783 0.427 0.912 sum -9.195 20.725 -4.674 23.150 Atomic orbital electron populations 1.20965 0.89988 1.03832 1.03436 1.20109 0.96869 0.92040 0.94767 1.22034 0.95636 0.98502 1.03000 1.22822 0.91815 0.96357 0.94723 1.67738 1.40990 0.98316 1.11895 1.22569 0.90948 0.96550 0.94667 1.20786 0.95423 0.95060 1.03589 1.19772 0.93425 0.82857 0.95776 0.87693 1.22211 1.02488 1.02780 0.94492 1.46027 1.11510 1.20093 1.58167 1.20823 0.88467 0.82684 0.78039 1.90299 1.15144 1.76244 1.57219 1.19706 0.87887 0.83436 0.81471 1.90768 1.14097 1.75819 1.59364 1.48436 1.10235 1.20319 1.50736 1.23081 0.80845 1.02346 1.00916 1.21851 0.98471 0.95411 1.00789 1.21667 0.97968 0.96140 0.99342 1.18979 0.89762 0.92144 0.96985 0.95256 1.21132 0.94016 1.08861 1.31668 0.92191 1.25062 0.97891 0.96266 0.94878 1.69873 1.10698 1.34825 1.36616 0.86515 0.79948 0.82492 0.78942 1.19773 1.20989 1.20950 1.22499 0.97589 0.83510 0.97576 0.90047 0.90675 0.90354 0.84563 0.82609 0.82778 0.91168 0.91778 0.90849 0.74965 0.92739 0.84026 0.92290 0.92338 0.93061 0.93255 0.92667 0.93368 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 9.31 36.01 0.34 -0.36 16 2 C -0.03 -0.23 5.92 -104.32 -0.62 -0.85 16 3 C -0.17 -1.23 9.82 -39.44 -0.39 -1.62 16 4 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 5 N -0.48 -5.41 10.36 -13.25 -0.14 -5.54 16 6 C 0.11 1.18 10.40 -17.54 -0.18 1.00 16 7 C -0.15 -1.39 5.07 -104.48 -0.53 -1.92 16 8 C 0.19 1.88 2.11 -69.08 -0.15 1.73 16 9 H 0.11 1.06 6.55 -51.93 -0.34 0.72 16 10 C -0.16 -1.48 9.30 37.16 0.35 -1.13 16 11 N -0.70 -8.94 4.99 -55.36 -0.28 -9.22 16 12 C 0.52 8.25 7.74 -11.58 -0.09 8.16 16 13 O -0.51 -8.25 12.76 5.50 0.07 -8.18 16 14 C 0.49 9.87 7.74 -11.59 -0.09 9.78 16 15 O -0.52 -11.82 15.95 5.49 0.09 -11.74 16 16 N -0.57 -11.72 2.97 -173.27 -0.51 -12.24 16 17 C 0.05 0.88 6.27 -3.71 -0.02 0.85 16 18 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 19 C -0.11 -2.33 5.11 -26.69 -0.14 -2.47 16 20 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.52 -14.02 8.57 -34.44 -0.30 -14.32 16 23 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 24 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 25 N -0.88 -25.42 11.38 55.43 0.63 -24.79 16 26 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 30 C 0.11 2.62 5.38 -3.71 -0.02 2.60 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.08 0.43 5.61 -51.93 -0.29 0.14 16 34 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.16 1.57 6.09 -52.49 -0.32 1.26 16 37 H 0.07 0.50 6.95 -51.93 -0.36 0.14 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.41 5.11 5.73 -40.82 -0.23 4.88 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.14 2.38 3.78 -56.75 -0.21 2.17 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 48 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -31.76 388.40 -8.87 -40.62 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.06 Total: 6.95 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.49 Total: 2.11 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.30 Total: -51.78 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.16 Total: -19.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.76 -8.87 -40.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261704191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.565 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds