Wall clock time and date at job start Wed Apr 1 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38672 * 120.79133 * 2 1 4 4 C 1.38176 * 119.16365 * 180.27241 * 3 2 1 5 5 N 1.31886 * 120.76739 * 359.71791 * 4 3 2 6 6 C 1.31862 * 121.72321 * 0.02562 * 5 4 3 7 7 C 1.38226 * 120.76133 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.41532 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46943 * 144.99916 * 8 7 6 10 10 C 1.53004 * 109.47314 * 264.99932 * 8 7 6 11 11 N 1.46502 * 109.47211 * 25.00412 * 8 7 6 12 12 C 1.34782 * 120.00166 * 154.99813 * 11 8 7 13 13 O 1.21350 * 119.99528 * 359.97438 * 12 11 8 14 14 C 1.49446 * 120.00084 * 179.97438 * 12 11 8 15 15 O 1.21356 * 119.99803 * 353.37756 * 14 12 11 16 16 N 1.34768 * 120.00057 * 173.37736 * 14 12 11 17 17 C 1.46923 * 120.63140 * 353.06161 * 16 14 12 18 18 C 1.53197 * 108.77603 * 126.41596 * 17 16 14 19 19 C 1.53036 * 109.34037 * 54.62030 * 18 17 16 20 20 C 1.53043 * 109.53781 * 298.68543 * 19 18 17 21 21 H 1.09000 * 109.49772 * 301.34791 * 20 19 18 22 22 C 1.50699 * 109.49861 * 181.28187 * 20 19 18 23 23 H 1.08009 * 119.99826 * 0.06421 * 22 20 19 24 24 C 1.37874 * 120.00391 * 180.34183 * 22 20 19 25 25 N 1.31511 * 119.99935 * 359.72505 * 24 22 20 26 26 Si 1.86803 * 120.00371 * 179.72468 * 24 22 20 27 27 H 1.48501 * 109.46987 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47049 * 119.99668 * 26 24 22 29 29 H 1.48495 * 109.47162 * 239.99991 * 26 24 22 30 30 C 1.46927 * 120.63303 * 173.08900 * 16 14 12 31 31 H 1.09005 * 109.47182 * 270.28491 * 1 2 3 32 32 H 1.09004 * 109.47302 * 30.28379 * 1 2 3 33 33 H 1.08998 * 109.47397 * 150.28479 * 1 2 3 34 34 H 1.08003 * 120.41458 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.61754 * 179.72700 * 4 3 2 36 36 H 1.07994 * 119.61822 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.46895 * 300.00278 * 10 8 7 38 38 H 1.08994 * 109.46749 * 60.00427 * 10 8 7 39 39 H 1.09002 * 109.46487 * 179.97438 * 10 8 7 40 40 H 0.96996 * 120.00059 * 334.99435 * 11 8 7 41 41 H 1.08998 * 109.59171 * 246.19792 * 17 16 14 42 42 H 1.09003 * 109.58922 * 6.48999 * 17 16 14 43 43 H 1.08995 * 109.50150 * 174.58993 * 18 17 16 44 44 H 1.09009 * 109.49617 * 294.68452 * 18 17 16 45 45 H 1.08997 * 109.49188 * 178.64856 * 19 18 17 46 46 H 1.09001 * 109.43006 * 58.68768 * 19 18 17 47 47 H 0.97000 * 120.00590 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.59192 * 113.79627 * 30 16 14 49 49 H 1.08998 * 109.70190 * 353.44355 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0057 5 7 4.2403 0.0001 -0.0056 6 6 3.5983 -1.1517 -0.0005 7 6 2.2166 -1.1909 0.0054 8 6 1.4908 -2.5116 0.0118 9 1 0.5805 -2.4231 0.6049 10 6 1.1289 -2.9016 -1.4228 11 7 2.3551 -3.5410 0.5945 12 6 1.8108 -4.6335 1.1662 13 8 0.6048 -4.7642 1.1985 14 6 2.6925 -5.6838 1.7601 15 8 3.8963 -5.6142 1.6229 16 7 2.1508 -6.7083 2.4481 17 6 0.7137 -6.7283 2.7531 18 6 0.1233 -8.0529 2.2594 19 6 0.9108 -9.2163 2.8662 20 6 2.3704 -9.1383 2.4124 21 1 2.4153 -9.1731 1.3239 22 6 3.1380 -10.3019 2.9849 23 1 2.6353 -11.0258 3.6093 24 6 4.4834 -10.4393 2.7164 25 7 5.0956 -9.5579 1.9563 26 14 5.4366 -11.8775 3.4324 27 1 4.5243 -12.7194 4.2473 28 1 6.0083 -12.6908 2.3291 29 1 6.5351 -11.3652 4.2903 30 6 2.9862 -7.8261 2.9080 31 1 -0.3634 0.0051 1.0277 32 1 -0.3634 0.8874 -0.5182 33 1 -0.3634 -0.8925 -0.5094 34 1 1.6967 2.1377 -0.0004 35 1 4.1582 2.0754 -0.0103 36 1 4.1584 -2.0750 -0.0010 37 1 0.4859 -2.1357 -1.8563 38 1 2.0391 -2.9902 -2.0158 39 1 0.6044 -3.8571 -1.4181 40 1 3.3191 -3.4363 0.5689 41 1 0.5674 -6.6420 3.8298 42 1 0.2216 -5.8963 2.2495 43 1 -0.9208 -8.1221 2.5645 44 1 0.1888 -8.0976 1.1722 45 1 0.4778 -10.1604 2.5355 46 1 0.8650 -9.1572 3.9536 47 1 6.0420 -9.6548 1.7670 48 1 3.0253 -7.8292 3.9973 49 1 3.9941 -7.7209 2.5066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261704191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:07 Heat of formation + Delta-G solvation = -43.494514 kcal Electronic energy + Delta-G solvation = -30646.864228 eV Core-core repulsion = 26573.442863 eV Total energy + Delta-G solvation = -4073.421365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.19473 -41.38306 -39.84680 -38.55320 -37.26708 -35.29792 -34.90142 -33.48620 -32.61015 -31.57419 -30.68066 -28.81346 -27.70590 -26.85629 -25.52278 -24.53489 -23.56198 -23.16162 -22.03426 -21.55878 -20.48538 -19.02368 -18.34937 -18.20268 -17.58488 -17.33324 -16.97208 -16.57142 -16.47647 -16.39710 -15.74077 -15.59076 -15.49491 -15.24716 -14.88570 -14.61029 -14.55328 -14.45938 -14.07270 -13.81614 -13.78024 -13.60315 -13.52452 -13.37805 -13.29004 -13.01083 -12.91282 -12.58813 -12.46221 -12.30881 -12.17125 -12.13467 -11.71293 -11.62176 -11.16312 -10.98743 -10.66413 -10.55929 -10.42962 -10.34102 -10.01646 -9.98775 -9.55974 -8.13111 -6.29431 0.05500 0.24179 0.31388 1.28263 1.40668 1.41864 1.53637 2.11350 2.40064 2.50805 2.76225 3.14295 3.20374 3.32673 3.60079 3.77600 3.85416 3.95213 4.13237 4.15841 4.19527 4.28432 4.33740 4.45820 4.56640 4.58553 4.63526 4.71678 4.75066 4.76936 4.81746 4.82148 4.87393 5.00796 5.05990 5.12510 5.16451 5.24030 5.25472 5.28831 5.35703 5.40040 5.52015 5.56689 5.71779 5.83407 5.90831 5.94323 6.28340 6.41980 6.67612 6.82153 6.95090 6.98452 7.40524 8.91042 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002515 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.507115 B =11129.128204 C =12239.883651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.030 4.030 3 C -0.164 4.164 4 C 0.089 3.911 5 N -0.515 5.515 6 C 0.088 3.912 7 C -0.153 4.153 8 C 0.189 3.811 9 H 0.112 0.888 10 C -0.158 4.158 11 N -0.689 5.689 12 C 0.528 3.472 13 O -0.510 6.510 14 C 0.484 3.516 15 O -0.560 6.560 16 N -0.573 5.573 17 C 0.049 3.951 18 C -0.120 4.120 19 C -0.107 4.107 20 C 0.039 3.961 21 H -0.011 1.011 22 C -0.534 4.534 23 H 0.063 0.937 24 C 0.010 3.990 25 N -0.915 5.915 26 Si 0.959 3.041 27 H -0.262 1.262 28 H -0.282 1.282 29 H -0.282 1.282 30 C 0.121 3.879 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.412 0.588 41 H 0.070 0.930 42 H 0.158 0.842 43 H 0.099 0.901 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.261 0.739 48 H 0.043 0.957 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 23.357 -4.695 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.038 4.038 3 C -0.183 4.183 4 C -0.067 4.067 5 N -0.224 5.224 6 C -0.068 4.068 7 C -0.155 4.155 8 C 0.086 3.914 9 H 0.130 0.870 10 C -0.216 4.216 11 N -0.343 5.343 12 C 0.310 3.690 13 O -0.389 6.389 14 C 0.266 3.734 15 O -0.439 6.439 16 N -0.304 5.304 17 C -0.071 4.071 18 C -0.158 4.158 19 C -0.145 4.145 20 C 0.020 3.980 21 H 0.007 0.993 22 C -0.572 4.572 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.554 5.554 26 Si 0.784 3.216 27 H -0.186 1.186 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.001 4.001 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.188 0.812 35 H 0.197 0.803 36 H 0.162 0.838 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.174 0.826 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.031 23.339 -4.813 26.695 hybrid contribution 1.010 -1.230 0.295 1.619 sum -11.021 22.109 -4.518 25.113 Atomic orbital electron populations 1.21050 0.87961 1.05010 1.04162 1.20458 0.98297 0.91499 0.93571 1.22399 0.95096 0.99670 1.01141 1.23330 0.93020 0.96308 0.94065 1.67699 1.42203 0.99207 1.13287 1.22527 0.91698 0.96462 0.96141 1.20703 0.94883 0.95336 1.04591 1.19964 0.92999 0.82265 0.96202 0.86991 1.22192 1.02614 1.02969 0.93811 1.46051 1.12049 1.19449 1.56765 1.19883 0.87711 0.82700 0.78736 1.90269 1.14474 1.76290 1.57821 1.20474 0.88081 0.84041 0.80773 1.90741 1.15965 1.76826 1.60392 1.48459 1.11348 1.19665 1.50932 1.23346 0.78671 1.02939 1.02184 1.21818 1.00159 0.93887 0.99898 1.21565 0.95259 0.97800 0.99871 1.18915 0.92789 0.91965 0.94378 0.99260 1.21518 0.94543 1.09646 1.31499 0.91894 1.25886 0.99009 0.98776 0.95233 1.70052 1.10716 1.36603 1.38010 0.85485 0.78521 0.79345 0.78201 1.18554 1.20803 1.20777 1.21950 0.96397 0.84897 0.96836 0.89414 0.88525 0.90216 0.81178 0.80296 0.83772 0.88534 0.92266 0.92128 0.74877 0.91124 0.82584 0.88264 0.93452 0.92771 0.92465 0.92978 0.93831 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.31 71.24 0.66 -0.27 16 2 C -0.03 -0.39 5.92 -19.67 -0.12 -0.51 16 3 C -0.16 -1.86 9.82 22.36 0.22 -1.64 16 4 C 0.09 1.37 11.18 84.67 0.95 2.32 16 5 N -0.51 -11.53 10.36 -195.85 -2.03 -13.55 16 6 C 0.09 1.92 10.40 84.69 0.88 2.81 16 7 C -0.15 -2.73 5.07 -19.77 -0.10 -2.83 16 8 C 0.19 3.58 2.11 44.25 0.09 3.68 16 9 H 0.11 2.02 6.55 -2.38 -0.02 2.00 16 10 C -0.16 -2.67 9.30 71.98 0.67 -2.00 16 11 N -0.69 -17.58 4.99 -447.42 -2.23 -19.81 16 12 C 0.53 16.80 7.74 87.27 0.68 17.47 16 13 O -0.51 -15.72 12.76 -3.25 -0.04 -15.76 16 14 C 0.48 19.98 7.74 87.27 0.68 20.65 16 15 O -0.56 -26.79 15.95 -3.27 -0.05 -26.84 16 16 N -0.57 -24.24 2.97 -820.48 -2.44 -26.67 16 17 C 0.05 1.64 6.27 86.36 0.54 2.18 16 18 C -0.12 -4.00 6.08 30.67 0.19 -3.82 16 19 C -0.11 -4.34 5.11 30.62 0.16 -4.19 16 20 C 0.04 1.99 2.25 -11.46 -0.03 1.96 16 21 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 22 C -0.53 -29.52 8.57 25.60 0.22 -29.30 16 23 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 24 C 0.01 0.58 5.30 84.65 0.45 1.03 16 25 N -0.92 -55.08 11.38 21.45 0.24 -54.83 16 26 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 27 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 30 C 0.12 6.11 5.38 86.36 0.46 6.58 16 31 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.10 0.34 8.10 -2.38 -0.02 0.32 16 33 H 0.08 0.59 5.61 -2.39 -0.01 0.58 16 34 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 35 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.15 3.20 6.09 -2.91 -0.02 3.18 16 37 H 0.10 1.12 6.95 -2.39 -0.02 1.11 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.41 10.71 5.73 -92.71 -0.53 10.18 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.16 4.92 3.78 -78.73 -0.30 4.62 16 43 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.08 4.96 5.17 -2.39 -0.01 4.95 16 Total: -1.00 -72.40 388.40 2.24 -70.16 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.16 Total: 26.91 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 6.60 Total: 14.12 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -6.46 Total: -114.87 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.09 Total: -42.60 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.40 2.24 -70.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261704191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.665 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds