Wall clock time and date at job start Wed Apr 1 2020 05:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.66748 * 2 1 4 4 O 1.21283 * 119.99541 * 120.00543 * 3 2 1 5 5 N 1.34773 * 120.00475 * 299.99555 * 3 2 1 6 6 C 1.46502 * 120.00473 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46946 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47292 * 294.99651 * 7 6 5 9 9 N 1.46493 * 109.47339 * 55.00339 * 7 6 5 10 10 C 1.36937 * 120.00377 * 54.92931 * 9 7 6 11 11 H 1.07998 * 119.99695 * 5.46508 * 10 9 7 12 12 C 1.38814 * 120.00252 * 185.46617 * 10 9 7 13 13 N 1.31621 * 119.99695 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99931 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47519 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47579 * 119.99823 * 14 12 10 17 17 H 1.48504 * 109.47046 * 239.99755 * 14 12 10 18 18 C 1.50702 * 109.46745 * 174.99843 * 7 6 5 19 19 C 1.38236 * 120.00234 * 206.65194 * 18 7 6 20 20 C 1.38230 * 119.99971 * 179.76504 * 19 18 7 21 21 C 1.38239 * 120.00269 * 0.51189 * 20 19 18 22 22 C 1.38235 * 119.99533 * 359.74128 * 21 20 19 23 23 C 1.38231 * 120.00538 * 0.02562 * 22 21 20 24 24 C 1.53342 * 109.67256 * 120.49631 * 2 1 3 25 25 C 1.52971 * 108.64861 * 52.26007 * 24 2 1 26 26 N 1.45749 * 110.51938 * 50.68731 * 25 24 2 27 27 C 1.33351 * 124.10968 * 340.97460 * 26 25 24 28 28 O 1.21281 * 118.24601 * 182.22355 * 27 26 25 29 29 C 1.50178 * 123.50729 * 2.19517 * 27 26 25 30 30 H 1.09009 * 109.46854 * 59.99637 * 1 2 3 31 31 H 1.08995 * 109.47203 * 300.00562 * 1 2 3 32 32 H 1.08994 * 109.47171 * 179.97438 * 1 2 3 33 33 H 0.97009 * 119.99608 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.46769 * 299.99901 * 6 5 3 35 35 H 1.09001 * 109.47060 * 59.99986 * 6 5 3 36 36 H 0.97005 * 119.99998 * 234.93339 * 9 7 6 37 37 H 0.97002 * 119.99737 * 180.02562 * 13 12 10 38 38 H 1.07995 * 119.99646 * 359.97438 * 19 18 7 39 39 H 1.08006 * 120.00091 * 180.22567 * 20 19 18 40 40 H 1.07997 * 120.00140 * 179.71942 * 21 20 19 41 41 H 1.08005 * 119.99383 * 179.97438 * 22 21 20 42 42 H 1.07993 * 120.00359 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.60376 * 171.96079 * 24 2 1 44 44 H 1.08999 * 109.60170 * 292.44488 * 24 2 1 45 45 H 1.09010 * 109.26783 * 290.38060 * 25 24 2 46 46 H 1.09006 * 109.13869 * 170.91796 * 25 24 2 47 47 H 0.97003 * 117.94304 * 160.94321 * 26 25 24 48 48 H 1.08993 * 109.39802 * 222.29449 * 29 27 26 49 49 H 1.08995 * 109.33160 * 102.50207 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.7360 1.8133 0.9096 5 7 1.7147 2.2501 -1.0108 6 6 2.2082 3.6295 -1.0111 7 6 1.7001 4.3527 -2.2600 8 1 2.1325 3.8916 -3.1480 9 7 0.2397 4.2549 -2.3208 10 6 -0.5194 4.6750 -1.2614 11 1 -0.0490 5.1591 -0.4184 12 6 -1.8936 4.4787 -1.2710 13 7 -2.4669 3.8891 -2.2986 14 14 -2.9291 5.0525 0.1739 15 1 -2.0512 5.6809 1.1935 16 1 -3.9298 6.0435 -0.2968 17 1 -3.6295 3.8886 0.7741 18 6 2.1043 5.8032 -2.1998 19 6 1.3531 6.7580 -2.8594 20 6 1.7211 8.0891 -2.8001 21 6 2.8463 8.4643 -2.0901 22 6 3.6004 7.5088 -1.4348 23 6 3.2297 6.1783 -1.4900 24 6 2.0463 -0.7328 1.2442 25 6 1.3756 -2.1057 1.3167 26 7 1.5028 -2.8043 0.0439 27 6 1.7808 -2.2042 -1.1140 28 8 1.8218 -2.8840 -2.1175 29 6 2.0454 -0.7314 -1.2420 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1556 1.9349 -1.7382 34 1 1.8469 4.1448 -0.1211 35 1 3.2982 3.6254 -1.0113 36 1 -0.1896 3.8924 -3.1115 37 1 -3.4272 3.7523 -2.3055 38 1 0.4769 6.4643 -3.4182 39 1 1.1322 8.8356 -3.3125 40 1 3.1363 9.5037 -2.0475 41 1 4.4797 7.8019 -0.8804 42 1 3.8191 5.4318 -0.9785 43 1 3.1268 -0.8576 1.1731 44 1 1.8002 -0.1567 2.1362 45 1 0.3192 -1.9779 1.5535 46 1 1.8517 -2.6951 2.1004 47 1 1.3777 -3.7662 0.0389 48 1 1.5359 -0.3476 -2.1257 49 1 3.1180 -0.5648 -1.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267361803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:16 Heat of formation + Delta-G solvation = -39.788790 kcal Electronic energy + Delta-G solvation = -31192.744990 eV Core-core repulsion = 27119.484317 eV Total energy + Delta-G solvation = -4073.260673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99195 -39.35303 -38.77769 -36.71465 -35.85751 -34.04539 -33.34325 -31.94286 -30.48765 -29.81353 -29.52837 -27.99508 -27.15294 -24.85230 -24.31328 -23.06604 -22.22692 -21.64757 -20.08669 -19.79402 -18.44293 -17.66945 -17.42433 -16.65702 -16.33150 -16.29117 -15.54750 -15.35732 -15.26278 -14.80044 -14.58004 -14.46227 -14.23989 -14.02356 -13.62051 -13.42485 -13.32234 -13.02962 -12.86292 -12.68874 -12.60591 -12.14989 -12.04722 -11.92036 -11.77865 -11.52057 -11.30638 -11.02804 -10.99042 -10.91693 -10.82214 -10.61006 -10.47329 -10.19490 -10.07673 -9.76957 -9.31323 -9.23419 -9.09954 -8.51590 -8.40032 -8.15845 -7.17901 -5.90214 -3.21751 1.85701 1.93904 2.54476 2.93704 3.15118 3.34563 3.43391 3.44765 3.53029 4.29741 4.37562 4.47524 4.50275 4.60257 4.65950 5.02252 5.07519 5.18015 5.25987 5.32685 5.34168 5.41339 5.44083 5.51042 5.57108 5.59275 5.64128 5.77111 5.79584 5.80745 5.89545 5.92459 5.98526 6.03338 6.15860 6.28765 6.33867 6.49007 6.59054 6.60816 6.61429 6.86481 6.97663 7.04925 7.16496 7.26680 7.53655 7.66308 7.97428 8.08990 8.25927 8.60295 9.39778 9.86965 10.24160 11.30984 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.003606 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.521913 B = 7763.575241 C = 9160.411817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C 0.523 3.477 4 O -0.553 6.553 5 N -0.695 5.695 6 C 0.116 3.884 7 C 0.196 3.804 8 H 0.073 0.927 9 N -0.713 5.713 10 C -0.230 4.230 11 H 0.069 0.931 12 C -0.004 4.004 13 N -0.929 5.929 14 Si 0.897 3.103 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.292 1.292 18 C -0.078 4.078 19 C -0.077 4.077 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.111 4.111 25 C 0.108 3.892 26 N -0.720 5.720 27 C 0.528 3.472 28 O -0.558 6.558 29 C -0.124 4.124 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.398 0.602 48 H 0.109 0.891 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -5.867 3.430 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C 0.308 3.692 4 O -0.432 6.432 5 N -0.345 5.345 6 C -0.010 4.010 7 C 0.085 3.915 8 H 0.091 0.909 9 N -0.353 5.353 10 C -0.361 4.361 11 H 0.087 0.913 12 C -0.200 4.200 13 N -0.576 5.576 14 Si 0.729 3.271 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C -0.081 4.081 19 C -0.095 4.095 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.016 4.016 26 N -0.372 5.372 27 C 0.315 3.685 28 O -0.437 6.437 29 C -0.164 4.164 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.233 0.767 48 H 0.127 0.873 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.099 -5.613 3.700 12.132 hybrid contribution -1.281 -0.014 0.473 1.365 sum 8.818 -5.627 4.173 11.262 Atomic orbital electron populations 1.21968 0.91291 1.02644 1.04462 1.20883 0.98203 0.93127 0.96130 1.20087 0.80325 0.86725 0.82087 1.90659 1.39020 1.77497 1.35990 1.45726 1.51893 1.12039 1.24805 1.21810 0.96633 0.81633 1.00901 1.19361 0.86947 0.89931 0.95306 0.90901 1.42401 0.98268 1.75181 1.19487 1.19075 0.88838 1.30948 0.97222 0.91279 1.24658 0.96726 1.01031 0.97606 1.69650 1.10021 1.48006 1.29967 0.86265 0.80608 0.77931 0.82329 1.20574 1.21893 1.21910 1.20730 0.93844 0.97622 0.95940 1.21065 0.98567 0.91855 0.98005 1.21125 0.97088 0.96413 1.00194 1.20992 0.96328 0.98701 0.99255 1.20982 0.99950 0.93446 1.00562 1.21125 0.97498 0.95972 0.99919 1.21739 1.00921 0.93974 0.98301 1.21499 1.01467 0.93728 0.84945 1.45467 1.72115 1.11677 1.07922 1.19987 0.75352 0.90488 0.82631 1.90765 1.52367 1.65204 1.35367 1.21743 1.04223 0.91152 0.99275 0.90553 0.91280 0.91717 0.75978 0.91166 0.92595 0.77869 0.93536 0.85231 0.86908 0.87186 0.87052 0.86444 0.90439 0.88641 0.90966 0.90305 0.76668 0.87284 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.72 37.16 0.29 -1.58 16 2 C -0.08 -0.98 0.63 -155.44 -0.10 -1.08 16 3 C 0.52 8.16 6.47 -10.99 -0.07 8.09 16 4 O -0.55 -10.24 15.90 5.55 0.09 -10.15 16 5 N -0.70 -10.98 5.20 -60.29 -0.31 -11.30 16 6 C 0.12 1.95 3.87 -4.04 -0.02 1.93 16 7 C 0.20 3.33 3.26 -69.08 -0.23 3.11 16 8 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 9 N -0.71 -14.69 3.82 -54.55 -0.21 -14.90 16 10 C -0.23 -5.54 8.52 -15.06 -0.13 -5.67 16 11 H 0.07 1.76 7.19 -52.49 -0.38 1.38 16 12 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 13 N -0.93 -25.08 13.07 55.49 0.73 -24.36 16 14 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 C -0.08 -1.34 5.19 -104.62 -0.54 -1.89 16 19 C -0.08 -1.36 9.03 -39.58 -0.36 -1.72 16 20 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 21 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 22 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 23 C -0.13 -1.98 9.14 -39.58 -0.36 -2.34 16 24 C -0.11 -1.15 4.35 -26.57 -0.12 -1.27 16 25 C 0.11 0.85 6.38 -4.46 -0.03 0.82 16 26 N -0.72 -6.85 5.24 -61.36 -0.32 -7.17 16 27 C 0.53 6.67 7.15 -11.87 -0.08 6.59 16 28 O -0.56 -9.20 17.78 5.56 0.10 -9.10 16 29 C -0.12 -1.45 4.64 -28.10 -0.13 -1.58 16 30 H 0.08 1.11 7.58 -51.92 -0.39 0.71 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.73 5.90 -51.93 -0.31 0.42 16 33 H 0.40 6.24 7.30 -40.82 -0.30 5.94 16 34 H 0.07 1.40 7.30 -51.93 -0.38 1.02 16 35 H 0.06 0.87 6.85 -51.93 -0.36 0.51 16 36 H 0.39 8.54 8.04 -40.82 -0.33 8.21 16 37 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.13 2.49 7.51 -52.49 -0.39 2.10 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.12 1.68 6.22 -52.49 -0.33 1.35 16 43 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 44 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 45 H 0.07 0.54 6.86 -51.92 -0.36 0.18 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.40 3.26 8.80 -40.82 -0.36 2.90 16 48 H 0.11 1.28 7.91 -51.93 -0.41 0.87 16 49 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -30.75 392.35 -9.41 -40.16 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -7.21 Total: 18.43 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.16 Total: -3.88 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.12 Total: -57.73 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.19 Total: -19.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.75 -9.41 -40.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267361803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.376 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds