Wall clock time and date at job start Wed Apr 1 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.66748 * 2 1 4 4 O 1.21283 * 119.99541 * 120.00543 * 3 2 1 5 5 N 1.34773 * 120.00475 * 299.99555 * 3 2 1 6 6 C 1.46502 * 120.00473 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46946 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47292 * 294.99651 * 7 6 5 9 9 N 1.46493 * 109.47339 * 55.00339 * 7 6 5 10 10 C 1.36937 * 120.00377 * 54.92931 * 9 7 6 11 11 H 1.07998 * 119.99695 * 5.46508 * 10 9 7 12 12 C 1.38814 * 120.00252 * 185.46617 * 10 9 7 13 13 N 1.31621 * 119.99695 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99931 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47519 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47579 * 119.99823 * 14 12 10 17 17 H 1.48504 * 109.47046 * 239.99755 * 14 12 10 18 18 C 1.50702 * 109.46745 * 174.99843 * 7 6 5 19 19 C 1.38236 * 120.00234 * 206.65194 * 18 7 6 20 20 C 1.38230 * 119.99971 * 179.76504 * 19 18 7 21 21 C 1.38239 * 120.00269 * 0.51189 * 20 19 18 22 22 C 1.38235 * 119.99533 * 359.74128 * 21 20 19 23 23 C 1.38231 * 120.00538 * 0.02562 * 22 21 20 24 24 C 1.53342 * 109.67256 * 120.49631 * 2 1 3 25 25 C 1.52971 * 108.64861 * 52.26007 * 24 2 1 26 26 N 1.45749 * 110.51938 * 50.68731 * 25 24 2 27 27 C 1.33351 * 124.10968 * 340.97460 * 26 25 24 28 28 O 1.21281 * 118.24601 * 182.22355 * 27 26 25 29 29 C 1.50178 * 123.50729 * 2.19517 * 27 26 25 30 30 H 1.09009 * 109.46854 * 59.99637 * 1 2 3 31 31 H 1.08995 * 109.47203 * 300.00562 * 1 2 3 32 32 H 1.08994 * 109.47171 * 179.97438 * 1 2 3 33 33 H 0.97009 * 119.99608 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.46769 * 299.99901 * 6 5 3 35 35 H 1.09001 * 109.47060 * 59.99986 * 6 5 3 36 36 H 0.97005 * 119.99998 * 234.93339 * 9 7 6 37 37 H 0.97002 * 119.99737 * 180.02562 * 13 12 10 38 38 H 1.07995 * 119.99646 * 359.97438 * 19 18 7 39 39 H 1.08006 * 120.00091 * 180.22567 * 20 19 18 40 40 H 1.07997 * 120.00140 * 179.71942 * 21 20 19 41 41 H 1.08005 * 119.99383 * 179.97438 * 22 21 20 42 42 H 1.07993 * 120.00359 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.60376 * 171.96079 * 24 2 1 44 44 H 1.08999 * 109.60170 * 292.44488 * 24 2 1 45 45 H 1.09010 * 109.26783 * 290.38060 * 25 24 2 46 46 H 1.09006 * 109.13869 * 170.91796 * 25 24 2 47 47 H 0.97003 * 117.94304 * 160.94321 * 26 25 24 48 48 H 1.08993 * 109.39802 * 222.29449 * 29 27 26 49 49 H 1.08995 * 109.33160 * 102.50207 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.7360 1.8133 0.9096 5 7 1.7147 2.2501 -1.0108 6 6 2.2082 3.6295 -1.0111 7 6 1.7001 4.3527 -2.2600 8 1 2.1325 3.8916 -3.1480 9 7 0.2397 4.2549 -2.3208 10 6 -0.5194 4.6750 -1.2614 11 1 -0.0490 5.1591 -0.4184 12 6 -1.8936 4.4787 -1.2710 13 7 -2.4669 3.8891 -2.2986 14 14 -2.9291 5.0525 0.1739 15 1 -2.0512 5.6809 1.1935 16 1 -3.9298 6.0435 -0.2968 17 1 -3.6295 3.8886 0.7741 18 6 2.1043 5.8032 -2.1998 19 6 1.3531 6.7580 -2.8594 20 6 1.7211 8.0891 -2.8001 21 6 2.8463 8.4643 -2.0901 22 6 3.6004 7.5088 -1.4348 23 6 3.2297 6.1783 -1.4900 24 6 2.0463 -0.7328 1.2442 25 6 1.3756 -2.1057 1.3167 26 7 1.5028 -2.8043 0.0439 27 6 1.7808 -2.2042 -1.1140 28 8 1.8218 -2.8840 -2.1175 29 6 2.0454 -0.7314 -1.2420 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1556 1.9349 -1.7382 34 1 1.8469 4.1448 -0.1211 35 1 3.2982 3.6254 -1.0113 36 1 -0.1896 3.8924 -3.1115 37 1 -3.4272 3.7523 -2.3055 38 1 0.4769 6.4643 -3.4182 39 1 1.1322 8.8356 -3.3125 40 1 3.1363 9.5037 -2.0475 41 1 4.4797 7.8019 -0.8804 42 1 3.8191 5.4318 -0.9785 43 1 3.1268 -0.8576 1.1731 44 1 1.8002 -0.1567 2.1362 45 1 0.3192 -1.9779 1.5535 46 1 1.8517 -2.6951 2.1004 47 1 1.3777 -3.7662 0.0389 48 1 1.5359 -0.3476 -2.1257 49 1 3.1180 -0.5648 -1.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267361803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:15 Heat of formation + Delta-G solvation = -60.402756 kcal Electronic energy + Delta-G solvation = -31193.638878 eV Core-core repulsion = 27119.484317 eV Total energy + Delta-G solvation = -4074.154562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.03313 -40.59791 -40.01444 -37.82284 -37.26429 -35.24901 -34.72601 -33.49137 -31.78813 -31.05629 -30.70803 -29.08700 -28.48033 -26.35904 -25.49113 -24.27195 -23.48411 -22.86444 -21.41123 -21.06535 -19.39102 -19.27760 -18.64620 -17.84884 -17.46737 -17.32116 -16.87371 -16.68307 -16.39065 -16.14714 -15.78819 -15.73152 -15.56351 -15.45186 -14.93992 -14.69709 -14.54064 -14.31783 -14.10563 -13.94033 -13.66877 -13.43361 -13.39399 -13.04741 -13.01566 -12.89699 -12.73171 -12.51132 -12.45394 -12.05494 -11.97121 -11.92411 -11.86995 -11.81652 -11.48568 -11.33114 -10.98506 -10.51452 -10.06578 -9.88464 -9.64518 -9.46599 -8.98532 -7.89919 -5.17095 0.61952 0.68974 1.41623 1.47026 1.52053 1.55168 1.67620 2.29215 2.32732 2.56798 3.04764 3.41112 3.44274 3.50680 3.65505 3.73775 3.88391 4.03055 4.06402 4.16143 4.22998 4.28925 4.35823 4.39561 4.43806 4.50441 4.54701 4.58911 4.67343 4.70645 4.78537 4.86657 4.91361 4.94349 5.02138 5.12573 5.15399 5.27108 5.29451 5.33409 5.55964 5.61451 5.74082 5.78065 5.84013 5.96914 6.28130 6.28654 6.32478 6.67163 7.17809 7.30893 7.41291 8.06166 8.34715 9.31664 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.003606 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.521913 B = 7763.575241 C = 9160.411817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C 0.520 3.480 4 O -0.581 6.581 5 N -0.696 5.696 6 C 0.127 3.873 7 C 0.199 3.801 8 H 0.093 0.907 9 N -0.713 5.713 10 C -0.199 4.199 11 H 0.056 0.944 12 C -0.054 4.054 13 N -0.955 5.955 14 Si 0.939 3.061 15 H -0.281 1.281 16 H -0.299 1.299 17 H -0.295 1.295 18 C -0.095 4.095 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.110 4.110 25 C 0.110 3.890 26 N -0.706 5.706 27 C 0.528 3.472 28 O -0.602 6.602 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.380 0.620 37 H 0.247 0.753 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.408 0.592 48 H 0.106 0.894 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.327 -5.953 4.680 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C 0.307 3.693 4 O -0.462 6.462 5 N -0.345 5.345 6 C 0.001 3.999 7 C 0.089 3.911 8 H 0.111 0.889 9 N -0.352 5.352 10 C -0.331 4.331 11 H 0.074 0.926 12 C -0.247 4.247 13 N -0.606 5.606 14 Si 0.771 3.229 15 H -0.206 1.206 16 H -0.227 1.227 17 H -0.223 1.223 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.013 4.013 26 N -0.357 5.357 27 C 0.316 3.684 28 O -0.484 6.484 29 C -0.160 4.160 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.243 0.757 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.213 0.787 37 H 0.057 0.943 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.131 0.869 47 H 0.245 0.755 48 H 0.124 0.876 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.795 -5.697 4.994 14.018 hybrid contribution -1.667 0.116 0.123 1.676 sum 10.128 -5.581 5.117 12.645 Atomic orbital electron populations 1.21912 0.91598 1.03334 1.02969 1.20824 0.97680 0.91171 0.97669 1.20656 0.79588 0.87844 0.81238 1.90640 1.40327 1.78324 1.36897 1.45776 1.51860 1.11766 1.25110 1.21630 0.97489 0.81801 0.99013 1.19514 0.84692 0.90585 0.96326 0.88875 1.42372 0.99807 1.74791 1.18261 1.19026 0.88774 1.28368 0.96961 0.92570 1.25075 0.97754 1.02716 0.99181 1.69740 1.09506 1.50140 1.31177 0.85585 0.79422 0.77162 0.80687 1.20647 1.22673 1.22263 1.20669 0.94945 0.97073 0.97095 1.20995 0.98543 0.93279 0.99199 1.21358 0.97917 0.95822 1.00483 1.21367 0.95304 1.00387 0.97936 1.21381 1.00629 0.92789 0.99950 1.21303 0.97044 0.97176 0.99575 1.21752 1.01194 0.95047 0.96815 1.21655 1.02310 0.92598 0.84720 1.45418 1.70345 1.12321 1.07623 1.20024 0.75122 0.90417 0.82864 1.90751 1.54703 1.65964 1.37002 1.21689 1.04660 0.90829 0.98773 0.92640 0.92130 0.89912 0.75743 0.94329 0.90828 0.78683 0.94330 0.87707 0.85467 0.84072 0.84015 0.85266 0.90334 0.89053 0.89816 0.86878 0.75529 0.87613 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 7.72 71.98 0.56 -2.96 16 2 C -0.07 -1.65 0.63 -52.79 -0.03 -1.69 16 3 C 0.52 16.05 6.47 87.66 0.57 16.62 16 4 O -0.58 -21.24 15.90 -3.04 -0.05 -21.29 16 5 N -0.70 -21.99 5.20 -463.06 -2.41 -24.40 16 6 C 0.13 4.22 3.87 86.38 0.33 4.56 16 7 C 0.20 6.75 3.26 44.25 0.14 6.89 16 8 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 9 N -0.71 -29.97 3.82 -326.51 -1.25 -31.22 16 10 C -0.20 -9.77 8.52 84.03 0.72 -9.05 16 11 H 0.06 2.91 7.19 -2.91 -0.02 2.89 16 12 C -0.05 -2.85 5.50 84.86 0.47 -2.38 16 13 N -0.95 -52.79 13.07 21.65 0.28 -52.51 16 14 Si 0.94 44.62 29.55 68.60 2.03 46.65 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 16 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 17 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 18 C -0.10 -3.23 5.19 -19.86 -0.10 -3.33 16 19 C -0.10 -3.63 9.03 22.27 0.20 -3.42 16 20 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 21 C -0.13 -3.46 10.05 22.27 0.22 -3.23 16 22 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.13 -3.92 9.14 22.27 0.20 -3.72 16 24 C -0.11 -2.06 4.35 30.70 0.13 -1.93 16 25 C 0.11 1.39 6.38 86.51 0.55 1.94 16 26 N -0.71 -11.77 5.24 -467.22 -2.45 -14.22 16 27 C 0.53 12.70 7.15 87.71 0.63 13.33 16 28 O -0.60 -19.54 17.78 -3.03 -0.05 -19.59 16 29 C -0.12 -2.70 4.64 29.71 0.14 -2.57 16 30 H 0.05 1.62 7.58 -2.38 -0.02 1.61 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.74 5.90 -2.39 -0.01 1.73 16 33 H 0.41 12.66 7.30 -92.70 -0.68 11.99 16 34 H 0.04 1.54 7.30 -2.39 -0.02 1.53 16 35 H 0.07 2.20 6.85 -2.39 -0.02 2.19 16 36 H 0.38 17.20 8.04 -92.70 -0.75 16.46 16 37 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 38 H 0.10 4.19 7.51 -2.91 -0.02 4.17 16 39 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.13 3.44 6.22 -2.91 -0.02 3.42 16 43 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 44 H 0.09 1.84 7.89 -2.39 -0.02 1.82 16 45 H 0.08 0.96 6.86 -2.38 -0.02 0.94 16 46 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 47 H 0.41 5.64 8.80 -92.71 -0.82 4.83 16 48 H 0.11 2.47 7.91 -2.39 -0.02 2.45 16 49 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -67.50 392.35 0.04 -67.46 By element: Atomic # 1 Polarization: 48.42 SS G_CDS: -1.24 Total: 47.18 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.17 Total: 1.94 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -5.82 Total: -122.35 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.10 Total: -40.88 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.50 0.04 -67.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267361803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.054 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds