Wall clock time and date at job start Wed Apr 1 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.66721 * 2 1 4 4 O 1.21283 * 120.00262 * 120.00304 * 3 2 1 5 5 N 1.34777 * 119.99928 * 299.72209 * 3 2 1 6 6 C 1.46499 * 120.00199 * 180.27479 * 5 3 2 7 7 C 1.50694 * 109.47550 * 180.02562 * 6 5 3 8 8 C 1.38232 * 120.00152 * 269.73162 * 7 6 5 9 9 C 1.38241 * 120.00043 * 179.80830 * 8 7 6 10 10 C 1.38238 * 119.99955 * 0.39348 * 9 8 7 11 11 C 1.50697 * 119.99910 * 179.83638 * 10 9 8 12 12 N 1.46505 * 109.47056 * 270.02341 * 11 10 9 13 13 C 1.36937 * 119.99973 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99771 * 359.97438 * 13 12 11 15 15 C 1.38809 * 119.99768 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00438 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99859 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47002 * 60.00165 * 17 15 13 19 19 H 1.48499 * 109.47179 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47308 * 299.99631 * 17 15 13 21 21 C 1.38236 * 119.99960 * 359.86089 * 10 9 8 22 22 C 1.38237 * 119.99920 * 359.94913 * 21 10 9 23 23 C 1.53343 * 109.67429 * 120.49584 * 2 1 3 24 24 C 1.52918 * 108.67614 * 52.24338 * 23 2 1 25 25 N 1.45755 * 110.48725 * 50.74658 * 24 23 2 26 26 C 1.33352 * 124.10740 * 340.90917 * 25 24 23 27 27 O 1.21285 * 118.24642 * 182.21980 * 26 25 24 28 28 C 1.50197 * 123.52115 * 2.22664 * 26 25 24 29 29 H 1.08996 * 109.47664 * 60.00025 * 1 2 3 30 30 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47427 * 299.99963 * 1 2 3 32 32 H 0.97000 * 120.00317 * 0.28382 * 5 3 2 33 33 H 1.08998 * 109.47134 * 300.00670 * 6 5 3 34 34 H 1.09002 * 109.46857 * 59.99862 * 6 5 3 35 35 H 1.07997 * 119.99904 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.00059 * 180.23377 * 9 8 7 37 37 H 1.08993 * 109.47250 * 30.01948 * 11 10 9 38 38 H 1.09001 * 109.46727 * 150.02772 * 11 10 9 39 39 H 0.97001 * 119.99881 * 359.97438 * 12 11 10 40 40 H 0.97001 * 120.00199 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.00231 * 179.97438 * 21 10 9 42 42 H 1.08001 * 120.00124 * 179.97438 * 22 21 10 43 43 H 1.08998 * 109.60100 * 171.99756 * 23 2 1 44 44 H 1.09003 * 109.60692 * 292.31959 * 23 2 1 45 45 H 1.08994 * 109.30310 * 171.06394 * 24 23 2 46 46 H 1.08995 * 109.29841 * 290.43746 * 24 23 2 47 47 H 0.97000 * 117.94556 * 160.92661 * 25 24 23 48 48 H 1.09004 * 109.41901 * 222.31683 * 28 26 25 49 49 H 1.09000 * 109.39257 * 102.56222 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.7359 1.8134 0.9096 5 7 1.7190 2.2484 -1.0137 6 6 2.2170 3.6262 -1.0167 7 6 1.7212 4.3369 -2.2496 8 6 2.4721 4.3135 -3.4099 9 6 2.0154 4.9621 -4.5420 10 6 0.8115 5.6410 -4.5114 11 6 0.3154 6.3511 -5.7445 12 7 0.8126 7.7292 -5.7476 13 6 0.4881 8.5718 -6.7772 14 1 -0.1339 8.2203 -7.5869 15 6 0.9597 9.8774 -6.7804 16 7 1.7182 10.3056 -5.7937 17 14 0.5176 11.0266 -8.1852 18 1 -0.9580 11.1779 -8.2552 19 1 1.1404 12.3545 -7.9530 20 1 1.0186 10.4611 -9.4636 21 6 0.0631 5.6688 -3.3495 22 6 0.5180 5.0168 -2.2186 23 6 2.0462 -0.7327 1.2442 24 6 1.3759 -2.1052 1.3176 25 7 1.5043 -2.8044 0.0451 26 6 1.7819 -2.2045 -1.1130 27 8 1.8240 -2.8848 -2.1162 28 6 2.0454 -0.7314 -1.2419 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.1602 1.9332 -1.7411 33 1 1.8560 4.1450 -0.1287 34 1 3.3070 3.6185 -1.0149 35 1 3.4144 3.7863 -3.4328 36 1 2.6002 4.9407 -5.4497 37 1 0.6766 5.8326 -6.6325 38 1 -0.7746 6.3582 -5.7458 39 1 1.3710 8.0450 -5.0201 40 1 2.0481 11.2178 -5.7961 41 1 -0.8772 6.1994 -3.3254 42 1 -0.0665 5.0389 -1.3107 43 1 3.1268 -0.8569 1.1733 44 1 1.8022 -0.1557 2.1361 45 1 1.8486 -2.6956 2.1024 46 1 0.3194 -1.9779 1.5537 47 1 1.3797 -3.7663 0.0404 48 1 1.5353 -0.3480 -2.1257 49 1 3.1176 -0.5630 -1.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270065709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:08 Heat of formation + Delta-G solvation = -46.436619 kcal Electronic energy + Delta-G solvation = -29214.573144 eV Core-core repulsion = 25141.024199 eV Total energy + Delta-G solvation = -4073.548944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.50541 -39.88338 -39.14592 -37.11386 -35.62100 -34.60274 -34.17552 -32.08415 -30.75717 -30.39821 -30.01779 -28.47746 -27.16265 -25.23160 -24.44632 -23.19211 -22.53068 -22.31088 -20.76725 -20.45844 -18.94043 -18.20824 -17.31595 -17.08214 -16.94380 -16.25621 -15.97026 -15.73796 -15.46675 -15.19179 -15.05413 -14.84759 -14.57501 -14.15066 -14.03157 -13.85952 -13.41178 -13.25680 -13.22762 -13.17904 -12.79339 -12.67559 -12.41541 -12.27825 -12.08870 -11.98994 -11.89238 -11.55534 -11.44325 -11.09931 -10.87757 -10.75715 -10.68353 -10.60947 -10.11433 -9.93735 -9.79076 -9.60113 -9.37258 -8.92391 -8.72815 -8.47768 -6.97222 -5.78855 -3.09036 1.34843 1.60280 2.15819 2.25901 2.76650 2.88034 3.42589 3.46793 3.48085 3.84994 3.90697 4.01898 4.09831 4.18144 4.46389 4.54970 4.59282 4.62956 4.74674 4.89097 4.90770 5.01113 5.05833 5.14603 5.17121 5.26647 5.28019 5.34390 5.37273 5.50908 5.53958 5.54127 5.64383 5.70628 5.81177 6.07901 6.11754 6.13024 6.17149 6.25145 6.45414 6.55586 6.59234 6.64991 6.79834 7.06823 7.15164 7.19290 7.66050 7.72449 7.85209 8.38753 9.50284 10.05947 10.41668 11.43432 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.001727 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.180534 B =16208.526668 C =16721.467747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C 0.524 3.476 4 O -0.536 6.536 5 N -0.719 5.719 6 C 0.165 3.835 7 C -0.126 4.126 8 C -0.103 4.103 9 C -0.106 4.106 10 C -0.063 4.063 11 C 0.184 3.816 12 N -0.726 5.726 13 C -0.244 4.244 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.910 3.090 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.106 4.106 22 C -0.103 4.103 23 C -0.113 4.113 24 C 0.108 3.892 25 N -0.720 5.720 26 C 0.526 3.474 27 O -0.553 6.553 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.402 0.598 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.401 0.599 48 H 0.108 0.892 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 -26.342 17.235 31.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C 0.309 3.691 4 O -0.412 6.412 5 N -0.371 5.371 6 C 0.043 3.957 7 C -0.127 4.127 8 C -0.122 4.122 9 C -0.124 4.124 10 C -0.063 4.063 11 C 0.057 3.943 12 N -0.371 5.371 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.151 4.151 24 C -0.016 4.016 25 N -0.373 5.373 26 C 0.313 3.687 27 O -0.431 6.431 28 C -0.165 4.165 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.236 0.764 48 H 0.127 0.873 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.380 -26.045 17.221 31.254 hybrid contribution -0.302 0.507 -0.805 0.998 sum -1.682 -25.538 16.416 30.406 Atomic orbital electron populations 1.21993 0.91615 1.03451 1.03475 1.20923 0.97989 0.92692 0.96928 1.20269 0.80176 0.86730 0.81907 1.90726 1.37599 1.77062 1.35839 1.46166 1.53388 1.12539 1.24994 1.20187 0.99176 0.80446 0.95907 1.19655 0.96432 1.01792 0.94830 1.20993 0.99237 0.99463 0.92465 1.21135 0.95784 0.97034 0.98484 1.20402 0.94190 0.95412 0.96335 1.19713 0.96482 0.86617 0.91513 1.42327 1.61319 1.06230 1.27213 1.19193 1.26009 0.92121 1.00181 0.91100 1.24767 1.00295 0.97396 0.98380 1.69665 1.38759 1.17169 1.32351 0.86237 0.77837 0.80212 0.81689 1.21221 1.21651 1.21209 1.21125 1.00392 0.98628 0.92336 1.20980 0.95482 0.97502 0.98229 1.21753 1.01393 0.94159 0.97813 1.21475 1.01368 0.93598 0.85193 1.45486 1.72125 1.11873 1.07797 1.19924 0.75656 0.90365 0.82764 1.90802 1.51916 1.65034 1.35358 1.21766 1.04660 0.91422 0.98691 0.91426 0.90986 0.91113 0.76270 0.90620 0.90613 0.86307 0.85778 0.95365 0.95391 0.78051 0.93389 0.85805 0.86349 0.90104 0.88484 0.89977 0.90987 0.76383 0.87348 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 7.72 37.16 0.29 -0.40 16 2 C -0.08 -0.48 0.63 -155.45 -0.10 -0.58 16 3 C 0.52 4.55 6.47 -10.98 -0.07 4.48 16 4 O -0.54 -6.59 15.90 5.55 0.09 -6.50 16 5 N -0.72 -5.80 5.36 -61.47 -0.33 -6.13 16 6 C 0.17 1.63 5.80 -5.20 -0.03 1.60 16 7 C -0.13 -1.45 5.25 -104.63 -0.55 -2.00 16 8 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 9 C -0.11 -1.58 9.70 -39.58 -0.38 -1.96 16 10 C -0.06 -1.04 5.25 -104.62 -0.55 -1.59 16 11 C 0.18 3.67 6.38 -5.19 -0.03 3.64 16 12 N -0.73 -18.41 5.59 -61.09 -0.34 -18.75 16 13 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 17 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.11 -1.57 9.70 -39.58 -0.38 -1.96 16 22 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 23 C -0.11 -0.57 4.35 -26.60 -0.12 -0.68 16 24 C 0.11 0.33 6.38 -4.49 -0.03 0.30 16 25 N -0.72 -3.75 5.24 -61.39 -0.32 -4.07 16 26 C 0.53 4.31 7.15 -11.86 -0.08 4.23 16 27 O -0.55 -7.00 17.78 5.55 0.10 -6.90 16 28 C -0.13 -0.82 4.64 -28.09 -0.13 -0.95 16 29 H 0.07 0.30 7.59 -51.93 -0.39 -0.10 16 30 H 0.07 0.30 5.90 -51.93 -0.31 0.00 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.40 2.66 7.62 -40.82 -0.31 2.34 16 33 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.39 10.44 7.66 -40.82 -0.31 10.12 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.10 0.51 7.89 -51.93 -0.41 0.10 16 45 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.07 0.15 6.86 -51.93 -0.36 -0.21 16 47 H 0.40 1.74 8.80 -40.82 -0.36 1.38 16 48 H 0.11 0.65 7.90 -51.93 -0.41 0.24 16 49 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -35.23 401.56 -9.70 -44.94 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.46 Total: 8.16 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.19 Total: -6.59 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.27 Total: -56.43 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.19 Total: -13.40 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.23 -9.70 -44.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270065709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.501 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds