Wall clock time and date at job start Wed Apr 1 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.66721 * 2 1 4 4 O 1.21283 * 120.00262 * 120.00304 * 3 2 1 5 5 N 1.34777 * 119.99928 * 299.72209 * 3 2 1 6 6 C 1.46499 * 120.00199 * 180.27479 * 5 3 2 7 7 C 1.50694 * 109.47550 * 180.02562 * 6 5 3 8 8 C 1.38232 * 120.00152 * 269.73162 * 7 6 5 9 9 C 1.38241 * 120.00043 * 179.80830 * 8 7 6 10 10 C 1.38238 * 119.99955 * 0.39348 * 9 8 7 11 11 C 1.50697 * 119.99910 * 179.83638 * 10 9 8 12 12 N 1.46505 * 109.47056 * 270.02341 * 11 10 9 13 13 C 1.36937 * 119.99973 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99771 * 359.97438 * 13 12 11 15 15 C 1.38809 * 119.99768 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00438 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99859 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47002 * 60.00165 * 17 15 13 19 19 H 1.48499 * 109.47179 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47308 * 299.99631 * 17 15 13 21 21 C 1.38236 * 119.99960 * 359.86089 * 10 9 8 22 22 C 1.38237 * 119.99920 * 359.94913 * 21 10 9 23 23 C 1.53343 * 109.67429 * 120.49584 * 2 1 3 24 24 C 1.52918 * 108.67614 * 52.24338 * 23 2 1 25 25 N 1.45755 * 110.48725 * 50.74658 * 24 23 2 26 26 C 1.33352 * 124.10740 * 340.90917 * 25 24 23 27 27 O 1.21285 * 118.24642 * 182.21980 * 26 25 24 28 28 C 1.50197 * 123.52115 * 2.22664 * 26 25 24 29 29 H 1.08996 * 109.47664 * 60.00025 * 1 2 3 30 30 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47427 * 299.99963 * 1 2 3 32 32 H 0.97000 * 120.00317 * 0.28382 * 5 3 2 33 33 H 1.08998 * 109.47134 * 300.00670 * 6 5 3 34 34 H 1.09002 * 109.46857 * 59.99862 * 6 5 3 35 35 H 1.07997 * 119.99904 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.00059 * 180.23377 * 9 8 7 37 37 H 1.08993 * 109.47250 * 30.01948 * 11 10 9 38 38 H 1.09001 * 109.46727 * 150.02772 * 11 10 9 39 39 H 0.97001 * 119.99881 * 359.97438 * 12 11 10 40 40 H 0.97001 * 120.00199 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.00231 * 179.97438 * 21 10 9 42 42 H 1.08001 * 120.00124 * 179.97438 * 22 21 10 43 43 H 1.08998 * 109.60100 * 171.99756 * 23 2 1 44 44 H 1.09003 * 109.60692 * 292.31959 * 23 2 1 45 45 H 1.08994 * 109.30310 * 171.06394 * 24 23 2 46 46 H 1.08995 * 109.29841 * 290.43746 * 24 23 2 47 47 H 0.97000 * 117.94556 * 160.92661 * 25 24 23 48 48 H 1.09004 * 109.41901 * 222.31683 * 28 26 25 49 49 H 1.09000 * 109.39257 * 102.56222 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.7359 1.8134 0.9096 5 7 1.7190 2.2484 -1.0137 6 6 2.2170 3.6262 -1.0167 7 6 1.7212 4.3369 -2.2496 8 6 2.4721 4.3135 -3.4099 9 6 2.0154 4.9621 -4.5420 10 6 0.8115 5.6410 -4.5114 11 6 0.3154 6.3511 -5.7445 12 7 0.8126 7.7292 -5.7476 13 6 0.4881 8.5718 -6.7772 14 1 -0.1339 8.2203 -7.5869 15 6 0.9597 9.8774 -6.7804 16 7 1.7182 10.3056 -5.7937 17 14 0.5176 11.0266 -8.1852 18 1 -0.9580 11.1779 -8.2552 19 1 1.1404 12.3545 -7.9530 20 1 1.0186 10.4611 -9.4636 21 6 0.0631 5.6688 -3.3495 22 6 0.5180 5.0168 -2.2186 23 6 2.0462 -0.7327 1.2442 24 6 1.3759 -2.1052 1.3176 25 7 1.5043 -2.8044 0.0451 26 6 1.7819 -2.2045 -1.1130 27 8 1.8240 -2.8848 -2.1162 28 6 2.0454 -0.7314 -1.2419 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.1602 1.9332 -1.7411 33 1 1.8560 4.1450 -0.1287 34 1 3.3070 3.6185 -1.0149 35 1 3.4144 3.7863 -3.4328 36 1 2.6002 4.9407 -5.4497 37 1 0.6766 5.8326 -6.6325 38 1 -0.7746 6.3582 -5.7458 39 1 1.3710 8.0450 -5.0201 40 1 2.0481 11.2178 -5.7961 41 1 -0.8772 6.1994 -3.3254 42 1 -0.0665 5.0389 -1.3107 43 1 3.1268 -0.8569 1.1733 44 1 1.8022 -0.1557 2.1361 45 1 1.8486 -2.6956 2.1024 46 1 0.3194 -1.9779 1.5537 47 1 1.3797 -3.7663 0.0404 48 1 1.5353 -0.3480 -2.1257 49 1 3.1176 -0.5630 -1.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270065709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:07 Heat of formation + Delta-G solvation = -71.597587 kcal Electronic energy + Delta-G solvation = -29215.664205 eV Core-core repulsion = 25141.024199 eV Total energy + Delta-G solvation = -4074.640006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.08792 -40.71740 -40.11870 -37.75506 -36.91696 -35.80895 -34.90063 -33.65391 -31.83968 -31.77774 -30.68782 -28.98959 -28.36549 -26.27329 -25.40401 -24.30298 -23.61712 -23.51658 -21.69044 -21.37710 -19.42131 -19.33241 -18.82777 -17.66286 -17.60156 -17.01533 -16.87701 -16.64300 -16.55352 -16.29558 -15.93204 -15.85159 -15.61922 -15.25305 -15.05477 -14.74186 -14.70510 -14.40060 -14.33055 -13.95106 -13.70196 -13.64836 -13.31512 -13.09877 -13.04767 -12.97924 -12.76451 -12.73269 -12.45634 -12.24736 -12.01123 -11.96157 -11.89856 -11.87644 -11.72696 -11.39335 -10.97907 -10.65035 -10.13091 -10.06880 -9.80769 -9.62079 -9.03932 -7.96176 -5.26642 0.25562 0.51716 1.47244 1.50527 1.52315 1.56774 1.59067 2.15116 2.31064 2.55201 2.88450 3.36700 3.38445 3.47284 3.62306 3.67724 3.72694 3.91065 4.00393 4.05744 4.14603 4.16005 4.24242 4.30483 4.38640 4.52677 4.57492 4.59419 4.68612 4.71060 4.71797 4.81237 4.89814 4.90402 4.92251 5.00121 5.08635 5.12973 5.20830 5.28786 5.35595 5.46575 5.47469 5.60794 5.81903 5.82407 6.07514 6.24349 6.29181 6.49614 7.16819 7.17745 7.31064 8.04105 8.29243 9.26755 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.001727 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.180534 B =16208.526668 C =16721.467747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C 0.526 3.474 4 O -0.572 6.572 5 N -0.711 5.711 6 C 0.171 3.829 7 C -0.109 4.109 8 C -0.099 4.099 9 C -0.117 4.117 10 C -0.087 4.087 11 C 0.185 3.815 12 N -0.739 5.739 13 C -0.250 4.250 14 H 0.078 0.922 15 C -0.075 4.075 16 N -0.969 5.969 17 Si 0.977 3.023 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.277 1.277 21 C -0.116 4.116 22 C -0.097 4.097 23 C -0.114 4.114 24 C 0.109 3.891 25 N -0.709 5.709 26 C 0.525 3.475 27 O -0.605 6.605 28 C -0.122 4.122 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.412 0.588 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.406 0.594 48 H 0.114 0.886 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 -27.778 18.492 33.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C 0.313 3.687 4 O -0.451 6.451 5 N -0.363 5.363 6 C 0.048 3.952 7 C -0.110 4.110 8 C -0.117 4.117 9 C -0.136 4.136 10 C -0.088 4.088 11 C 0.059 3.941 12 N -0.382 5.382 13 C -0.382 4.382 14 H 0.096 0.904 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.806 3.194 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.203 1.203 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.152 4.152 24 C -0.014 4.014 25 N -0.360 5.360 26 C 0.312 3.688 27 O -0.488 6.488 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.137 0.863 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.205 0.795 40 H 0.061 0.939 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.124 0.876 46 H 0.110 0.890 47 H 0.243 0.757 48 H 0.132 0.868 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.252 -27.532 18.489 33.240 hybrid contribution -0.040 0.845 -1.086 1.376 sum -2.292 -26.687 17.403 31.942 Atomic orbital electron populations 1.22014 0.90248 1.04117 1.04003 1.20868 0.98895 0.90688 0.97053 1.20681 0.79321 0.87552 0.81134 1.90717 1.39238 1.77895 1.37223 1.46057 1.53197 1.11812 1.25233 1.20063 0.99090 0.81192 0.94867 1.19803 0.95637 1.00604 0.94957 1.21201 1.00002 0.98735 0.91789 1.21169 0.95343 0.97637 0.99411 1.20162 0.95709 0.97156 0.95775 1.19767 0.96370 0.84410 0.93535 1.42531 1.61246 1.08144 1.26237 1.19635 1.25147 0.92715 1.00684 0.90407 1.25621 1.00883 0.99143 1.01069 1.69831 1.40446 1.17200 1.34434 0.85160 0.77806 0.77657 0.78802 1.20231 1.22137 1.20303 1.21178 1.00386 0.99258 0.92628 1.21205 0.95777 0.96343 0.98161 1.21764 1.00920 0.95152 0.97337 1.21659 1.02644 0.92622 0.84470 1.45495 1.70332 1.12361 1.07768 1.20135 0.75146 0.90704 0.82778 1.90780 1.54625 1.66109 1.37246 1.21735 1.04624 0.90614 0.99269 0.91034 0.90242 0.90525 0.75171 0.90465 0.90765 0.84126 0.86272 0.95322 0.95174 0.79494 0.93949 0.86060 0.83808 0.91225 0.88360 0.87641 0.89018 0.75735 0.86792 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 7.72 71.98 0.56 -0.40 16 2 C -0.07 -0.70 0.63 -52.79 -0.03 -0.73 16 3 C 0.53 8.17 6.47 87.66 0.57 8.73 16 4 O -0.57 -13.25 15.90 -3.04 -0.05 -13.30 16 5 N -0.71 -9.86 5.36 -466.79 -2.50 -12.36 16 6 C 0.17 2.98 5.80 85.63 0.50 3.48 16 7 C -0.11 -2.27 5.25 -19.87 -0.10 -2.38 16 8 C -0.10 -2.30 9.70 22.27 0.22 -2.09 16 9 C -0.12 -3.46 9.70 22.27 0.22 -3.25 16 10 C -0.09 -2.92 5.25 -19.87 -0.10 -3.02 16 11 C 0.18 7.52 6.38 85.63 0.55 8.06 16 12 N -0.74 -38.23 5.59 -347.19 -1.94 -40.17 16 13 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 14 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 15 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 16 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 17 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 22 C -0.10 -2.18 9.70 22.27 0.22 -1.96 16 23 C -0.11 -0.91 4.35 30.68 0.13 -0.78 16 24 C 0.11 0.36 6.38 86.49 0.55 0.91 16 25 N -0.71 -6.00 5.24 -467.31 -2.45 -8.45 16 26 C 0.52 8.05 7.15 87.72 0.63 8.68 16 27 O -0.61 -15.26 17.78 -3.05 -0.05 -15.32 16 28 C -0.12 -1.43 4.64 29.71 0.14 -1.30 16 29 H 0.07 0.44 7.59 -2.39 -0.02 0.42 16 30 H 0.08 0.43 5.90 -2.39 -0.01 0.42 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.41 4.38 7.62 -92.71 -0.71 3.67 16 33 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 39 H 0.37 20.81 7.66 -92.71 -0.71 20.10 16 40 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 44 H 0.10 0.82 7.89 -2.39 -0.02 0.80 16 45 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.09 0.04 6.86 -2.39 -0.02 0.02 16 47 H 0.41 2.80 8.80 -92.71 -0.82 1.98 16 48 H 0.11 1.19 7.90 -2.39 -0.02 1.18 16 49 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 Total: -1.00 -77.33 401.56 -0.38 -77.71 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -1.24 Total: 29.56 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.55 Total: -6.30 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.61 Total: -120.54 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.10 Total: -28.62 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -77.33 -0.38 -77.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270065709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.113 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds