Wall clock time and date at job start Wed Apr 1 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35458 * 126.06521 * 2 1 4 4 N 1.35528 * 108.86811 * 179.97438 * 3 2 1 5 5 H 0.97003 * 125.67888 * 179.97438 * 4 3 2 6 6 C 1.37650 * 108.64489 * 359.97438 * 4 3 2 7 7 C 1.46681 * 126.23270 * 180.02562 * 6 4 3 8 8 O 1.21689 * 120.00245 * 173.31248 * 7 6 4 9 9 N 1.34783 * 119.99750 * 353.30839 * 7 6 4 10 10 C 1.47645 * 125.81658 * 354.40162 * 9 7 6 11 11 C 1.54971 * 104.86074 * 204.01800 * 10 9 7 12 12 C 1.55335 * 101.66781 * 323.40350 * 11 10 9 13 13 C 1.46232 * 125.80875 * 174.42333 * 9 7 6 14 14 C 1.53895 * 110.91446 * 299.82475 * 13 9 7 15 15 C 1.54642 * 101.59191 * 144.74965 * 14 13 9 16 16 N 1.46851 * 105.50598 * 335.22664 * 15 14 13 17 17 C 1.46502 * 124.36657 * 196.85032 * 16 15 14 18 18 C 1.52997 * 109.46797 * 90.00277 * 17 16 15 19 19 C 1.50704 * 109.47081 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99740 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99783 * 180.27168 * 19 18 17 22 22 N 1.31507 * 120.00672 * 359.72795 * 21 19 18 23 23 Si 1.86806 * 119.99769 * 179.72464 * 21 19 18 24 24 H 1.48505 * 109.47090 * 89.99842 * 23 21 19 25 25 H 1.48500 * 109.47279 * 210.00167 * 23 21 19 26 26 H 1.48504 * 109.47095 * 330.00581 * 23 21 19 27 27 C 1.34660 * 111.26269 * 17.12066 * 16 15 14 28 28 O 1.21279 * 125.07015 * 178.90563 * 27 16 15 29 29 C 1.37863 * 107.53602 * 0.26562 * 6 4 3 30 30 H 1.09001 * 109.47041 * 90.02174 * 1 2 3 31 31 H 1.08997 * 109.46781 * 210.02306 * 1 2 3 32 32 H 1.08997 * 109.46880 * 330.02621 * 1 2 3 33 33 H 1.07997 * 125.55917 * 0.02562 * 3 2 1 34 34 H 1.09008 * 110.36455 * 322.86239 * 10 9 7 35 35 H 1.09000 * 110.36527 * 85.06120 * 10 9 7 36 36 H 1.08997 * 110.99072 * 81.49392 * 11 10 9 37 37 H 1.09000 * 110.99172 * 205.27069 * 11 10 9 38 38 H 1.09007 * 110.75663 * 276.58576 * 12 11 10 39 39 H 1.08992 * 110.76227 * 153.19907 * 12 11 10 40 40 H 1.08999 * 110.99782 * 26.67478 * 14 13 9 41 41 H 1.08998 * 111.00067 * 262.82669 * 14 13 9 42 42 H 1.08995 * 110.23973 * 216.21741 * 15 14 13 43 43 H 1.09005 * 110.23707 * 94.23192 * 15 14 13 44 44 H 1.08992 * 109.47234 * 329.99695 * 17 16 15 45 45 H 1.09004 * 109.46526 * 209.99726 * 17 16 15 46 46 H 1.09000 * 109.47465 * 59.99935 * 18 17 16 47 47 H 1.09001 * 109.47492 * 299.99748 * 18 17 16 48 48 H 0.96997 * 120.00308 * 180.02562 * 22 21 19 49 49 H 1.07999 * 126.45919 * 179.73511 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3045 1.0950 0.0000 4 7 3.5992 0.6943 0.0006 5 1 4.3727 1.2797 0.0003 6 6 3.6340 -0.6818 0.0015 7 6 4.8387 -1.5186 0.0029 8 8 4.7412 -2.7253 0.1264 9 7 6.0536 -0.9510 -0.1327 10 6 6.3148 0.4762 -0.4061 11 6 7.7169 0.5045 -1.0657 12 6 8.4536 -0.6189 -0.2857 13 6 7.3375 -1.6440 -0.0344 14 6 7.5079 -2.2912 1.3514 15 6 8.2797 -3.5838 0.9979 16 7 7.9483 -3.8680 -0.4041 17 6 8.1593 -5.1620 -1.0579 18 6 6.9100 -6.0287 -0.8883 19 6 7.1268 -7.3596 -1.5613 20 1 8.0623 -7.5666 -2.0597 21 6 6.1290 -8.3109 -1.5451 22 7 4.9901 -8.0591 -0.9379 23 14 6.3949 -9.9577 -2.3860 24 1 6.9843 -10.9180 -1.4186 25 1 5.0931 -10.4811 -2.8724 26 1 7.3190 -9.7832 -3.5354 27 6 7.4307 -2.7841 -1.0130 28 8 7.0884 -2.7348 -2.1754 29 6 2.3304 -1.1303 -0.0046 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.9641 2.1199 0.0004 34 1 5.5657 0.8747 -1.0904 35 1 6.3195 1.0458 0.5233 36 1 7.6538 0.2657 -2.1273 37 1 8.2011 1.4689 -0.9126 38 1 8.8491 -0.2394 0.6566 39 1 9.2480 -1.0534 -0.8924 40 1 6.5400 -2.5232 1.7957 41 1 8.0959 -1.6530 2.0109 42 1 7.9532 -4.4045 1.6365 43 1 9.3525 -3.4241 1.1069 44 1 9.0139 -5.6634 -0.6037 45 1 8.3518 -5.0056 -2.1193 46 1 6.0554 -5.5273 -1.3426 47 1 6.7175 -6.1851 0.1731 48 1 4.2883 -8.7286 -0.9262 49 1 2.0061 -2.1604 -0.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271968769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:28 Heat of formation + Delta-G solvation = -7.039851 kcal Electronic energy + Delta-G solvation = -31526.680727 eV Core-core repulsion = 27454.840155 eV Total energy + Delta-G solvation = -4071.840572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71176 -40.85374 -38.45520 -37.14865 -35.89934 -33.66422 -32.96881 -31.83004 -31.68879 -29.72320 -29.12549 -27.92477 -26.70563 -25.19302 -24.58208 -22.99662 -22.10675 -21.70552 -20.80317 -20.06029 -19.63227 -18.59604 -17.58725 -16.64187 -16.45212 -16.17897 -15.63445 -15.34286 -15.17244 -14.79060 -14.39224 -14.17762 -14.10615 -13.95772 -13.54497 -13.38742 -13.21556 -12.99696 -12.96450 -12.73847 -12.63537 -12.57499 -12.40268 -12.16333 -12.06131 -11.79317 -11.63783 -11.54440 -11.37104 -11.15891 -10.87048 -10.77708 -10.59687 -9.92749 -9.88819 -9.75774 -9.62550 -9.08680 -8.85790 -8.53819 -8.25038 -8.19481 -7.91239 -5.88520 -3.93089 1.46696 2.53220 2.61870 2.99518 3.22832 3.38362 3.41845 3.44279 3.47984 3.64639 4.11323 4.19936 4.40764 4.54708 4.59543 4.67444 4.73461 4.85254 4.92312 4.99664 5.07482 5.13325 5.19165 5.32626 5.36224 5.46081 5.47554 5.55963 5.61107 5.66625 5.74988 5.79801 5.87746 5.90149 6.00150 6.01913 6.13446 6.16554 6.30556 6.53949 6.69432 6.88043 6.94609 7.08229 7.24194 7.40440 7.62187 7.81572 8.00124 8.14382 8.21909 8.46173 8.74559 9.14380 9.69938 11.22325 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.003565 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.517720 B = 7853.114700 C = 9962.867398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.180 4.180 3 C 0.013 3.987 4 N -0.545 5.545 5 H 0.415 0.585 6 C -0.041 4.041 7 C 0.597 3.403 8 O -0.490 6.490 9 N -0.602 5.602 10 C 0.089 3.911 11 C -0.129 4.129 12 C -0.109 4.109 13 C 0.133 3.867 14 C -0.136 4.136 15 C 0.106 3.894 16 N -0.604 5.604 17 C 0.130 3.870 18 C 0.015 3.985 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.888 5.888 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.522 3.478 28 O -0.523 6.523 29 C -0.101 4.101 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.168 0.832 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.024 0.976 47 H 0.017 0.983 48 H 0.260 0.740 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 26.215 7.047 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.187 4.187 3 C -0.122 4.122 4 N -0.145 5.145 5 H 0.257 0.743 6 C -0.154 4.154 7 C 0.386 3.614 8 O -0.362 6.362 9 N -0.338 5.338 10 C -0.034 4.034 11 C -0.167 4.167 12 C -0.147 4.147 13 C 0.044 3.956 14 C -0.175 4.175 15 C -0.019 4.019 16 N -0.337 5.337 17 C 0.010 3.990 18 C -0.023 4.023 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.526 5.526 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.306 3.694 28 O -0.399 6.399 29 C -0.128 4.128 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.186 0.814 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.035 0.965 48 H 0.070 0.930 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.578 25.410 6.505 26.277 hybrid contribution 0.326 -0.665 -0.385 0.835 sum 1.904 24.745 6.120 25.562 Atomic orbital electron populations 1.20129 0.89750 1.02068 1.01650 1.19505 0.96035 0.92182 1.10931 1.21799 0.82682 0.99404 1.08328 1.42529 1.08248 1.06384 1.57367 0.74341 1.20298 0.95059 0.82040 1.18005 1.16815 0.80358 0.87036 0.77147 1.91036 1.84793 1.12615 1.47725 1.48034 1.04270 1.08675 1.72805 1.22551 0.98516 0.82833 0.99499 1.22823 0.93617 0.99227 1.01028 1.22529 0.96076 0.94450 1.01656 1.21141 0.84760 0.93389 0.96307 1.22959 1.02627 0.96599 0.95304 1.22009 0.98524 0.97511 0.83806 1.48449 1.61803 1.12166 1.11300 1.21807 1.00757 0.80068 0.96362 1.19364 0.92139 0.93366 0.97457 1.21089 1.00747 0.99114 1.35307 0.92627 1.25008 0.95116 0.98627 0.95506 1.70005 1.05015 1.34538 1.43050 0.86590 0.77501 0.84052 0.79808 1.20695 1.21205 1.19863 1.20261 0.77272 0.84212 0.87628 1.90672 1.49087 1.83232 1.16862 1.21302 0.89725 0.99476 1.02258 0.91994 0.91722 0.92259 0.81432 0.90678 0.90980 0.89584 0.89220 0.89229 0.89382 0.89160 0.89241 0.89873 0.91404 0.91676 0.91288 0.95807 0.96499 0.93010 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.37 36.01 0.37 -0.33 16 2 C -0.18 -2.08 6.10 -105.01 -0.64 -2.72 16 3 C 0.01 0.12 11.80 -16.91 -0.20 -0.08 16 4 N -0.54 -5.47 5.37 -9.39 -0.05 -5.52 16 5 H 0.41 2.88 5.36 -40.82 -0.22 2.66 16 6 C -0.04 -0.61 6.83 -81.98 -0.56 -1.17 16 7 C 0.60 10.61 7.17 -12.85 -0.09 10.52 16 8 O -0.49 -11.33 15.56 5.20 0.08 -11.25 16 9 N -0.60 -8.61 2.90 -158.90 -0.46 -9.07 16 10 C 0.09 0.79 5.27 -2.37 -0.01 0.77 16 11 C -0.13 -1.05 7.09 -24.45 -0.17 -1.23 16 12 C -0.11 -1.05 6.07 -25.17 -0.15 -1.20 16 13 C 0.13 1.93 0.72 -132.41 -0.10 1.84 16 14 C -0.14 -1.78 6.21 -25.40 -0.16 -1.94 16 15 C 0.11 1.57 7.36 -2.99 -0.02 1.55 16 16 N -0.60 -12.08 2.94 -172.49 -0.51 -12.58 16 17 C 0.13 2.98 5.89 -4.04 -0.02 2.96 16 18 C 0.01 0.42 5.30 -27.88 -0.15 0.27 16 19 C -0.52 -15.77 9.11 -34.44 -0.31 -16.08 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -28.60 13.29 55.43 0.74 -27.87 16 23 Si 0.89 22.72 29.54 -169.99 -5.02 17.70 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 27 C 0.52 10.63 5.78 -11.12 -0.06 10.57 16 28 O -0.52 -12.87 17.60 5.56 0.10 -12.78 16 29 C -0.10 -1.52 10.60 -39.12 -0.41 -1.93 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.08 0.61 6.24 -51.92 -0.32 0.29 16 35 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.59 7.45 -51.93 -0.39 0.20 16 39 H 0.09 0.91 7.81 -51.93 -0.41 0.50 16 40 H 0.09 1.40 6.92 -51.93 -0.36 1.04 16 41 H 0.09 0.79 7.44 -51.93 -0.39 0.40 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.07 1.65 7.92 -51.93 -0.41 1.24 16 46 H 0.02 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 49 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -41.41 396.21 -9.46 -50.87 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.51 Total: 1.03 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.79 Total: 3.50 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.28 Total: -55.04 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.18 Total: -24.03 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -41.41 -9.46 -50.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.833 kcal (2) G-P(sol) polarization free energy of solvation -41.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds