Wall clock time and date at job start Wed Apr 1 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35458 * 126.06521 * 2 1 4 4 N 1.35528 * 108.86811 * 179.97438 * 3 2 1 5 5 H 0.97003 * 125.67888 * 179.97438 * 4 3 2 6 6 C 1.37650 * 108.64489 * 359.97438 * 4 3 2 7 7 C 1.46681 * 126.23270 * 180.02562 * 6 4 3 8 8 O 1.21689 * 120.00245 * 173.31248 * 7 6 4 9 9 N 1.34783 * 119.99750 * 353.30839 * 7 6 4 10 10 C 1.47645 * 125.81658 * 354.40162 * 9 7 6 11 11 C 1.54971 * 104.86074 * 204.01800 * 10 9 7 12 12 C 1.55335 * 101.66781 * 323.40350 * 11 10 9 13 13 C 1.46232 * 125.80875 * 174.42333 * 9 7 6 14 14 C 1.53895 * 110.91446 * 299.82475 * 13 9 7 15 15 C 1.54642 * 101.59191 * 144.74965 * 14 13 9 16 16 N 1.46851 * 105.50598 * 335.22664 * 15 14 13 17 17 C 1.46502 * 124.36657 * 196.85032 * 16 15 14 18 18 C 1.52997 * 109.46797 * 90.00277 * 17 16 15 19 19 C 1.50704 * 109.47081 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99740 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99783 * 180.27168 * 19 18 17 22 22 N 1.31507 * 120.00672 * 359.72795 * 21 19 18 23 23 Si 1.86806 * 119.99769 * 179.72464 * 21 19 18 24 24 H 1.48505 * 109.47090 * 89.99842 * 23 21 19 25 25 H 1.48500 * 109.47279 * 210.00167 * 23 21 19 26 26 H 1.48504 * 109.47095 * 330.00581 * 23 21 19 27 27 C 1.34660 * 111.26269 * 17.12066 * 16 15 14 28 28 O 1.21279 * 125.07015 * 178.90563 * 27 16 15 29 29 C 1.37863 * 107.53602 * 0.26562 * 6 4 3 30 30 H 1.09001 * 109.47041 * 90.02174 * 1 2 3 31 31 H 1.08997 * 109.46781 * 210.02306 * 1 2 3 32 32 H 1.08997 * 109.46880 * 330.02621 * 1 2 3 33 33 H 1.07997 * 125.55917 * 0.02562 * 3 2 1 34 34 H 1.09008 * 110.36455 * 322.86239 * 10 9 7 35 35 H 1.09000 * 110.36527 * 85.06120 * 10 9 7 36 36 H 1.08997 * 110.99072 * 81.49392 * 11 10 9 37 37 H 1.09000 * 110.99172 * 205.27069 * 11 10 9 38 38 H 1.09007 * 110.75663 * 276.58576 * 12 11 10 39 39 H 1.08992 * 110.76227 * 153.19907 * 12 11 10 40 40 H 1.08999 * 110.99782 * 26.67478 * 14 13 9 41 41 H 1.08998 * 111.00067 * 262.82669 * 14 13 9 42 42 H 1.08995 * 110.23973 * 216.21741 * 15 14 13 43 43 H 1.09005 * 110.23707 * 94.23192 * 15 14 13 44 44 H 1.08992 * 109.47234 * 329.99695 * 17 16 15 45 45 H 1.09004 * 109.46526 * 209.99726 * 17 16 15 46 46 H 1.09000 * 109.47465 * 59.99935 * 18 17 16 47 47 H 1.09001 * 109.47492 * 299.99748 * 18 17 16 48 48 H 0.96997 * 120.00308 * 180.02562 * 22 21 19 49 49 H 1.07999 * 126.45919 * 179.73511 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3045 1.0950 0.0000 4 7 3.5992 0.6943 0.0006 5 1 4.3727 1.2797 0.0003 6 6 3.6340 -0.6818 0.0015 7 6 4.8387 -1.5186 0.0029 8 8 4.7412 -2.7253 0.1264 9 7 6.0536 -0.9510 -0.1327 10 6 6.3148 0.4762 -0.4061 11 6 7.7169 0.5045 -1.0657 12 6 8.4536 -0.6189 -0.2857 13 6 7.3375 -1.6440 -0.0344 14 6 7.5079 -2.2912 1.3514 15 6 8.2797 -3.5838 0.9979 16 7 7.9483 -3.8680 -0.4041 17 6 8.1593 -5.1620 -1.0579 18 6 6.9100 -6.0287 -0.8883 19 6 7.1268 -7.3596 -1.5613 20 1 8.0623 -7.5666 -2.0597 21 6 6.1290 -8.3109 -1.5451 22 7 4.9901 -8.0591 -0.9379 23 14 6.3949 -9.9577 -2.3860 24 1 6.9843 -10.9180 -1.4186 25 1 5.0931 -10.4811 -2.8724 26 1 7.3190 -9.7832 -3.5354 27 6 7.4307 -2.7841 -1.0130 28 8 7.0884 -2.7348 -2.1754 29 6 2.3304 -1.1303 -0.0046 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.9641 2.1199 0.0004 34 1 5.5657 0.8747 -1.0904 35 1 6.3195 1.0458 0.5233 36 1 7.6538 0.2657 -2.1273 37 1 8.2011 1.4689 -0.9126 38 1 8.8491 -0.2394 0.6566 39 1 9.2480 -1.0534 -0.8924 40 1 6.5400 -2.5232 1.7957 41 1 8.0959 -1.6530 2.0109 42 1 7.9532 -4.4045 1.6365 43 1 9.3525 -3.4241 1.1069 44 1 9.0139 -5.6634 -0.6037 45 1 8.3518 -5.0056 -2.1193 46 1 6.0554 -5.5273 -1.3426 47 1 6.7175 -6.1851 0.1731 48 1 4.2883 -8.7286 -0.9262 49 1 2.0061 -2.1604 -0.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271968769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:27 Heat of formation + Delta-G solvation = -38.350723 kcal Electronic energy + Delta-G solvation = -31528.038468 eV Core-core repulsion = 27454.840155 eV Total energy + Delta-G solvation = -4073.198314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.80447 -41.97834 -39.85380 -38.39194 -37.53172 -35.69108 -34.13112 -33.42941 -32.69271 -30.95787 -30.66659 -29.12041 -27.56384 -27.05612 -25.83812 -24.19268 -23.64465 -22.83531 -22.02278 -21.34785 -20.73502 -19.89185 -18.77694 -18.58929 -17.80337 -17.31927 -17.11110 -16.78239 -16.50897 -16.36372 -15.81666 -15.64203 -15.13804 -14.91837 -14.88383 -14.62367 -14.56245 -14.34912 -14.21948 -14.00813 -13.91172 -13.67383 -13.64667 -13.48121 -13.29644 -13.10865 -12.87611 -12.80336 -12.59676 -12.43457 -12.27420 -12.23542 -12.04065 -11.90842 -11.71840 -11.48374 -11.30415 -11.01818 -10.66721 -9.95275 -9.73259 -9.62339 -9.12020 -8.26967 -6.43883 0.35349 1.26719 1.33203 1.38029 1.49186 1.69097 1.83087 2.09338 2.19755 2.24339 2.37401 3.04561 3.20955 3.27569 3.37910 3.62810 3.69689 3.90662 3.97589 4.11959 4.16611 4.21921 4.25740 4.31757 4.36251 4.45197 4.52824 4.58922 4.68300 4.72756 4.77130 4.79972 4.83200 4.93549 4.97679 5.01205 5.03191 5.18010 5.21506 5.22152 5.26587 5.28576 5.36723 5.52139 5.75076 5.76993 5.86182 6.07185 6.21701 6.28196 6.53395 6.72921 6.96103 7.14827 7.26971 8.85546 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.003565 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.517720 B = 7853.114700 C = 9962.867398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.201 4.201 3 C 0.053 3.947 4 N -0.521 5.521 5 H 0.433 0.567 6 C -0.070 4.070 7 C 0.586 3.414 8 O -0.572 6.572 9 N -0.602 5.602 10 C 0.078 3.922 11 C -0.122 4.122 12 C -0.101 4.101 13 C 0.132 3.868 14 C -0.125 4.125 15 C 0.096 3.904 16 N -0.617 5.617 17 C 0.144 3.856 18 C 0.031 3.969 19 C -0.548 4.548 20 H 0.072 0.928 21 C -0.006 4.006 22 N -0.936 5.936 23 Si 0.980 3.020 24 H -0.261 1.261 25 H -0.283 1.283 26 H -0.259 1.259 27 C 0.502 3.498 28 O -0.585 6.585 29 C -0.136 4.136 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.053 0.947 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.153 0.847 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.052 0.948 46 H -0.044 1.044 47 H -0.012 1.012 48 H 0.264 0.736 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 30.395 8.262 31.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.206 4.206 3 C -0.084 4.084 4 N -0.123 5.123 5 H 0.278 0.722 6 C -0.183 4.183 7 C 0.378 3.622 8 O -0.451 6.451 9 N -0.335 5.335 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.139 4.139 13 C 0.042 3.958 14 C -0.163 4.163 15 C -0.026 4.026 16 N -0.349 5.349 17 C 0.022 3.978 18 C -0.007 4.007 19 C -0.587 4.587 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.209 1.209 26 H -0.183 1.183 27 C 0.289 3.711 28 O -0.465 6.465 29 C -0.163 4.163 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.242 0.758 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.170 0.830 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.116 0.884 45 H 0.071 0.929 46 H -0.025 1.025 47 H 0.007 0.993 48 H 0.073 0.927 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.021 29.683 7.758 30.942 hybrid contribution -0.510 -1.907 -0.769 2.118 sum 3.511 27.776 6.989 28.856 Atomic orbital electron populations 1.20172 0.88083 1.02991 1.02131 1.19840 0.97429 0.91536 1.11821 1.22620 0.81361 1.00905 1.03497 1.42431 1.09619 1.04369 1.55838 0.72155 1.19832 0.93515 0.84114 1.20848 1.17349 0.82204 0.86471 0.76164 1.90986 1.86194 1.16083 1.51832 1.48198 1.03146 1.11163 1.70983 1.23075 0.99273 0.79734 1.02220 1.22882 0.93132 1.01117 0.98833 1.22706 0.93838 0.92999 1.04356 1.21384 0.86883 0.92831 0.94653 1.23041 1.01638 0.96343 0.95257 1.22427 1.01752 0.98071 0.80321 1.48611 1.61748 1.10955 1.13608 1.21350 0.98589 0.81399 0.96432 1.19109 0.92590 0.94205 0.94751 1.21565 1.01721 0.99652 1.35723 0.90951 1.26221 0.94388 1.03814 0.95958 1.70204 1.06329 1.36432 1.44573 0.85236 0.77759 0.77740 0.78985 1.18573 1.20892 1.18312 1.21560 0.75511 0.86115 0.87884 1.90605 1.51297 1.84733 1.19892 1.21350 0.91544 0.99331 1.04120 0.91700 0.93016 0.89140 0.75768 0.90187 0.85944 0.92805 0.83959 0.84000 0.90110 0.92687 0.82966 0.91663 0.86237 0.88364 0.92902 1.02515 0.99328 0.92734 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.37 71.24 0.74 -0.57 16 2 C -0.20 -4.56 6.10 -20.12 -0.12 -4.68 16 3 C 0.05 0.79 11.80 83.48 0.99 1.77 16 4 N -0.52 -9.24 5.37 -183.63 -0.99 -10.22 16 5 H 0.43 4.21 5.36 -92.71 -0.50 3.71 16 6 C -0.07 -2.19 6.83 40.35 0.28 -1.91 16 7 C 0.59 22.76 7.17 86.45 0.62 23.38 16 8 O -0.57 -30.28 15.56 -4.31 -0.07 -30.35 16 9 N -0.60 -17.33 2.90 -774.85 -2.25 -19.58 16 10 C 0.08 1.11 5.27 86.83 0.46 1.56 16 11 C -0.12 -1.52 7.09 32.07 0.23 -1.29 16 12 C -0.10 -1.56 6.07 31.60 0.19 -1.37 16 13 C 0.13 3.77 0.72 3.36 0.00 3.77 16 14 C -0.12 -3.12 6.21 31.46 0.20 -2.93 16 15 C 0.10 2.86 7.36 86.87 0.64 3.50 16 16 N -0.62 -26.24 2.94 -818.10 -2.41 -28.64 16 17 C 0.14 7.08 5.89 86.38 0.51 7.59 16 18 C 0.03 1.98 5.30 29.85 0.16 2.14 16 19 C -0.55 -34.82 9.11 25.60 0.23 -34.59 16 20 H 0.07 4.25 7.74 -2.91 -0.02 4.22 16 21 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 22 N -0.94 -64.25 13.29 21.44 0.28 -63.97 16 23 Si 0.98 48.06 29.54 68.60 2.03 50.08 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.50 21.88 5.78 87.62 0.51 22.38 16 28 O -0.59 -31.64 17.60 -3.03 -0.05 -31.70 16 29 C -0.14 -4.52 10.60 22.57 0.24 -4.28 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.23 0.83 8.06 -2.91 -0.02 0.80 16 34 H 0.08 1.07 6.24 -2.38 -0.01 1.05 16 35 H 0.12 0.62 7.84 -2.39 -0.02 0.60 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.14 0.79 7.45 -2.38 -0.02 0.77 16 39 H 0.08 1.43 7.81 -2.39 -0.02 1.41 16 40 H 0.05 1.80 6.92 -2.39 -0.02 1.78 16 41 H 0.15 1.87 7.44 -2.39 -0.02 1.85 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.12 2.34 8.14 -2.38 -0.02 2.33 16 44 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.05 2.73 7.92 -2.38 -0.02 2.71 16 46 H -0.04 -3.29 8.14 -2.39 -0.02 -3.31 16 47 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 48 H 0.26 16.87 8.31 -92.71 -0.77 16.10 16 49 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -110.51 396.21 3.33 -107.17 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.47 Total: 12.65 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.32 Total: 14.56 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.36 Total: -122.42 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -0.12 Total: -62.05 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.08 kcal Total: -110.51 3.33 -107.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.824 kcal (2) G-P(sol) polarization free energy of solvation -110.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds