Wall clock time and date at job start Wed Apr 1 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35459 * 126.06814 * 2 1 4 4 N 1.35530 * 108.87052 * 179.74257 * 3 2 1 5 5 H 0.97004 * 125.67596 * 180.26092 * 4 3 2 6 6 C 1.37650 * 108.64375 * 0.38116 * 4 3 2 7 7 C 1.46684 * 126.23028 * 179.88826 * 6 4 3 8 8 O 1.21693 * 119.99815 * 173.01419 * 7 6 4 9 9 N 1.34774 * 120.00309 * 353.01423 * 7 6 4 10 10 C 1.47650 * 125.81147 * 354.60000 * 9 7 6 11 11 C 1.54979 * 104.85831 * 203.98592 * 10 9 7 12 12 C 1.55325 * 101.66433 * 323.40143 * 11 10 9 13 13 C 1.46229 * 125.81788 * 174.57700 * 9 7 6 14 14 C 1.54062 * 111.01917 * 57.71689 * 13 9 7 15 15 C 1.54639 * 101.51907 * 263.78163 * 14 13 9 16 16 N 1.46856 * 105.50134 * 335.00902 * 15 14 13 17 17 C 1.46500 * 124.36570 * 196.87675 * 16 15 14 18 18 C 1.52996 * 109.47098 * 270.02153 * 17 16 15 19 19 C 1.50701 * 109.47128 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99836 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00247 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00223 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99890 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46968 * 90.00125 * 23 21 19 25 25 H 1.48496 * 109.46959 * 210.00020 * 23 21 19 26 26 H 1.48500 * 109.47184 * 330.00117 * 23 21 19 27 27 C 1.34659 * 111.26061 * 16.87850 * 16 15 14 28 28 O 1.21286 * 125.06949 * 179.14503 * 27 16 15 29 29 C 1.37871 * 107.53704 * 359.61995 * 6 4 3 30 30 H 1.08997 * 109.47300 * 270.02869 * 1 2 3 31 31 H 1.09002 * 109.46998 * 30.02763 * 1 2 3 32 32 H 1.09001 * 109.47176 * 150.02481 * 1 2 3 33 33 H 1.07994 * 125.56065 * 0.02562 * 3 2 1 34 34 H 1.09003 * 110.36284 * 322.83125 * 10 9 7 35 35 H 1.09003 * 110.36650 * 85.03217 * 10 9 7 36 36 H 1.09004 * 110.98223 * 81.49575 * 11 10 9 37 37 H 1.08990 * 110.98919 * 205.26683 * 11 10 9 38 38 H 1.08996 * 110.76375 * 276.57738 * 12 11 10 39 39 H 1.09010 * 110.76139 * 153.19276 * 12 11 10 40 40 H 1.08995 * 111.21687 * 145.64974 * 14 13 9 41 41 H 1.09000 * 110.89114 * 21.76610 * 14 13 9 42 42 H 1.09000 * 110.24159 * 216.00486 * 15 14 13 43 43 H 1.09000 * 110.24461 * 94.01373 * 15 14 13 44 44 H 1.08993 * 109.47255 * 30.02753 * 17 16 15 45 45 H 1.08999 * 109.46842 * 150.02334 * 17 16 15 46 46 H 1.08993 * 109.47557 * 300.00414 * 18 17 16 47 47 H 1.09007 * 109.46827 * 60.00383 * 18 17 16 48 48 H 0.97004 * 120.00432 * 179.97438 * 22 21 19 49 49 H 1.07993 * 126.45856 * 180.26015 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0949 0.0000 4 7 3.5992 0.6942 0.0058 5 1 4.3726 1.2797 0.0106 6 6 3.6340 -0.6818 0.0009 7 6 4.8387 -1.5186 0.0022 8 8 4.7412 -2.7253 0.1256 9 7 6.0536 -0.9511 -0.1333 10 6 6.3149 0.4770 -0.4024 11 6 7.7165 0.5069 -1.0632 12 6 8.4535 -0.6190 -0.2874 13 6 7.3375 -1.6446 -0.0382 14 6 7.4251 -2.7886 -1.0664 15 6 7.0048 -4.0059 -0.2104 16 7 7.3240 -3.6402 1.1755 17 6 7.4285 -4.5968 2.2801 18 6 6.0597 -4.7615 2.9434 19 6 6.1671 -5.7461 4.0793 20 1 7.1168 -6.2078 4.3057 21 6 5.0529 -6.0574 4.8294 22 7 5.1467 -6.9162 5.8210 23 14 3.4101 -5.2593 4.4373 24 1 2.6756 -6.0956 3.4543 25 1 2.6086 -5.1392 5.6817 26 1 3.6400 -3.9088 3.8643 27 6 7.5082 -2.3121 1.3000 28 8 7.7678 -1.7387 2.3368 29 6 2.3303 -1.1303 0.0006 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 1.9641 2.1198 0.0004 34 1 5.5653 0.8777 -1.0848 35 1 6.3206 1.0436 0.5287 36 1 7.6522 0.2715 -2.1256 37 1 8.2009 1.4707 -0.9076 38 1 8.8500 -0.2427 0.6556 39 1 9.2473 -1.0520 -0.8962 40 1 8.4422 -2.9062 -1.4400 41 1 6.7258 -2.6280 -1.8870 42 1 7.5706 -4.8890 -0.5072 43 1 5.9355 -4.1895 -0.3152 44 1 7.7645 -5.5600 1.8961 45 1 8.1456 -4.2280 3.0135 46 1 5.7237 -3.7984 3.3275 47 1 5.3426 -5.1304 2.2099 48 1 4.3630 -7.1350 6.3490 49 1 2.0060 -2.1604 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271968770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:32 Heat of formation + Delta-G solvation = -1.443279 kcal Electronic energy + Delta-G solvation = -32037.980391 eV Core-core repulsion = 27966.382504 eV Total energy + Delta-G solvation = -4071.597887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83513 -40.94444 -38.49961 -37.34806 -35.95893 -33.72460 -33.03210 -31.95400 -31.75045 -29.79942 -29.52418 -28.03006 -26.80348 -25.39854 -24.53550 -23.23686 -22.16376 -21.47681 -20.77232 -20.07123 -19.68928 -18.69639 -17.68402 -16.90776 -16.59307 -16.34235 -16.04222 -15.49975 -14.94998 -14.94296 -14.50722 -14.20105 -14.03176 -13.95752 -13.64867 -13.47512 -13.27454 -13.10901 -13.07783 -12.84148 -12.73584 -12.61909 -12.54040 -12.43255 -12.20608 -11.78875 -11.70069 -11.60218 -11.49140 -11.20711 -10.91147 -10.84432 -10.37681 -10.00437 -9.86244 -9.84538 -9.63062 -9.16033 -8.94158 -8.67941 -8.44406 -8.27568 -7.97808 -5.96820 -3.94832 1.35567 2.31329 2.53468 2.92644 3.23406 3.29584 3.42383 3.47997 3.54597 3.61565 4.01707 4.09399 4.36908 4.47344 4.56998 4.60342 4.69769 4.79027 4.86383 4.95908 5.06338 5.10891 5.12397 5.23681 5.33958 5.38768 5.44633 5.49517 5.53421 5.61799 5.71737 5.76911 5.79241 5.85293 5.93363 6.03138 6.04049 6.17760 6.30420 6.43458 6.61920 6.73042 6.80023 6.94912 7.16064 7.26594 7.35807 7.51493 7.74630 7.86918 8.09638 8.55967 8.62457 9.06064 9.66667 11.16121 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008399 B = 0.004992 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.994079 B = 5608.062413 C = 8176.458788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.180 4.180 3 C 0.017 3.983 4 N -0.544 5.544 5 H 0.416 0.584 6 C -0.045 4.045 7 C 0.599 3.401 8 O -0.496 6.496 9 N -0.601 5.601 10 C 0.087 3.913 11 C -0.125 4.125 12 C -0.114 4.114 13 C 0.134 3.866 14 C -0.133 4.133 15 C 0.095 3.905 16 N -0.594 5.594 17 C 0.138 3.862 18 C -0.020 4.020 19 C -0.519 4.519 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.904 5.904 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.264 1.264 27 C 0.510 3.490 28 O -0.530 6.530 29 C -0.100 4.100 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.169 0.831 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.263 0.737 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 20.446 -21.568 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.186 4.186 3 C -0.119 4.119 4 N -0.144 5.144 5 H 0.258 0.742 6 C -0.157 4.157 7 C 0.390 3.610 8 O -0.369 6.369 9 N -0.337 5.337 10 C -0.036 4.036 11 C -0.163 4.163 12 C -0.152 4.152 13 C 0.045 3.955 14 C -0.172 4.172 15 C -0.028 4.028 16 N -0.325 5.325 17 C 0.018 3.982 18 C -0.058 4.058 19 C -0.558 4.558 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.543 5.543 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.189 1.189 27 C 0.294 3.706 28 O -0.407 6.407 29 C -0.127 4.127 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.187 0.813 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.035 0.965 47 H 0.035 0.965 48 H 0.072 0.928 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.059 19.920 -20.717 28.740 hybrid contribution -0.672 0.649 0.025 0.934 sum -0.731 20.569 -20.691 29.185 Atomic orbital electron populations 1.20132 0.89700 1.02024 1.01773 1.19506 0.96069 0.92170 1.10894 1.21833 0.82633 0.99502 1.07926 1.42541 1.08338 1.06404 1.57143 0.74246 1.20252 0.94975 0.82163 1.18355 1.16821 0.80421 0.87156 0.76644 1.90863 1.84890 1.12798 1.48383 1.48094 1.04116 1.08983 1.72546 1.22621 0.98332 0.82692 0.99995 1.22775 0.93737 0.99811 0.99968 1.22582 0.95870 0.94626 1.02160 1.21134 0.84814 0.94083 0.95472 1.22943 1.02802 0.94021 0.97404 1.22356 1.03388 0.96561 0.80471 1.48479 1.66703 1.07384 1.09957 1.21589 1.00556 0.89906 0.86170 1.19828 0.92615 0.97382 0.95975 1.20997 0.97425 1.24016 1.13324 0.90893 1.24935 0.98935 0.94560 0.94588 1.69911 1.30125 1.34179 1.20057 0.86788 0.84005 0.81090 0.77607 1.20176 1.21471 1.18870 1.20438 0.77412 0.83121 0.89605 1.90683 1.49448 1.68385 1.32137 1.21260 0.89704 0.99379 1.02360 0.91902 0.92193 0.91790 0.81340 0.90471 0.90816 0.89989 0.89168 0.89040 0.89019 0.89382 0.89345 0.91138 0.88184 0.91018 0.90775 0.96460 0.96459 0.92775 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.37 36.01 0.37 -0.32 16 2 C -0.18 -2.03 6.10 -105.02 -0.64 -2.67 16 3 C 0.02 0.15 11.80 -16.91 -0.20 -0.05 16 4 N -0.54 -5.47 5.37 -9.39 -0.05 -5.52 16 5 H 0.42 3.03 5.37 -40.82 -0.22 2.81 16 6 C -0.04 -0.63 6.82 -81.98 -0.56 -1.19 16 7 C 0.60 9.64 7.42 -12.85 -0.10 9.55 16 8 O -0.50 -9.71 12.86 5.20 0.07 -9.64 16 9 N -0.60 -7.90 2.86 -158.81 -0.45 -8.36 16 10 C 0.09 0.72 5.27 -2.37 -0.01 0.71 16 11 C -0.12 -0.79 7.09 -24.45 -0.17 -0.96 16 12 C -0.11 -1.09 6.06 -25.18 -0.15 -1.24 16 13 C 0.13 1.81 0.85 -132.34 -0.11 1.70 16 14 C -0.13 -1.55 5.97 -25.31 -0.15 -1.70 16 15 C 0.10 1.48 6.39 -2.99 -0.02 1.46 16 16 N -0.59 -11.59 2.80 -172.50 -0.48 -12.07 16 17 C 0.14 3.10 5.88 -4.04 -0.02 3.08 16 18 C -0.02 -0.53 4.36 -27.88 -0.12 -0.65 16 19 C -0.52 -15.86 9.66 -34.44 -0.33 -16.20 16 20 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 21 C 0.07 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.90 -29.22 13.96 55.43 0.77 -28.45 16 23 Si 0.88 24.05 27.47 -169.99 -4.67 19.38 16 24 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 26 H -0.26 -7.40 6.54 56.52 0.37 -7.03 16 27 C 0.51 9.84 6.55 -11.13 -0.07 9.77 16 28 O -0.53 -12.19 17.07 5.55 0.09 -12.09 16 29 C -0.10 -1.42 10.60 -39.12 -0.41 -1.84 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.08 0.47 6.24 -51.93 -0.32 0.15 16 35 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 1.03 7.51 -51.93 -0.39 0.64 16 39 H 0.09 0.68 7.40 -51.92 -0.38 0.30 16 40 H 0.09 0.79 7.46 -51.93 -0.39 0.40 16 41 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.78 5.63 -51.93 -0.29 1.49 16 44 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.07 1.74 7.94 -51.93 -0.41 1.33 16 46 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 47 H 0.02 0.47 7.57 -51.92 -0.39 0.08 16 48 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 49 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -39.98 387.44 -9.08 -49.07 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.39 Total: 0.29 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.81 Total: 1.56 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.21 Total: -54.40 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.16 Total: -21.74 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.67 Total: 19.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.98 -9.08 -49.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.624 kcal (2) G-P(sol) polarization free energy of solvation -39.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds