Wall clock time and date at job start Wed Apr 1 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35459 * 126.06814 * 2 1 4 4 N 1.35530 * 108.87052 * 179.74257 * 3 2 1 5 5 H 0.97004 * 125.67596 * 180.26092 * 4 3 2 6 6 C 1.37650 * 108.64375 * 0.38116 * 4 3 2 7 7 C 1.46684 * 126.23028 * 179.88826 * 6 4 3 8 8 O 1.21693 * 119.99815 * 173.01419 * 7 6 4 9 9 N 1.34774 * 120.00309 * 353.01423 * 7 6 4 10 10 C 1.47650 * 125.81147 * 354.60000 * 9 7 6 11 11 C 1.54979 * 104.85831 * 203.98592 * 10 9 7 12 12 C 1.55325 * 101.66433 * 323.40143 * 11 10 9 13 13 C 1.46229 * 125.81788 * 174.57700 * 9 7 6 14 14 C 1.54062 * 111.01917 * 57.71689 * 13 9 7 15 15 C 1.54639 * 101.51907 * 263.78163 * 14 13 9 16 16 N 1.46856 * 105.50134 * 335.00902 * 15 14 13 17 17 C 1.46500 * 124.36570 * 196.87675 * 16 15 14 18 18 C 1.52996 * 109.47098 * 270.02153 * 17 16 15 19 19 C 1.50701 * 109.47128 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99836 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00247 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00223 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99890 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46968 * 90.00125 * 23 21 19 25 25 H 1.48496 * 109.46959 * 210.00020 * 23 21 19 26 26 H 1.48500 * 109.47184 * 330.00117 * 23 21 19 27 27 C 1.34659 * 111.26061 * 16.87850 * 16 15 14 28 28 O 1.21286 * 125.06949 * 179.14503 * 27 16 15 29 29 C 1.37871 * 107.53704 * 359.61995 * 6 4 3 30 30 H 1.08997 * 109.47300 * 270.02869 * 1 2 3 31 31 H 1.09002 * 109.46998 * 30.02763 * 1 2 3 32 32 H 1.09001 * 109.47176 * 150.02481 * 1 2 3 33 33 H 1.07994 * 125.56065 * 0.02562 * 3 2 1 34 34 H 1.09003 * 110.36284 * 322.83125 * 10 9 7 35 35 H 1.09003 * 110.36650 * 85.03217 * 10 9 7 36 36 H 1.09004 * 110.98223 * 81.49575 * 11 10 9 37 37 H 1.08990 * 110.98919 * 205.26683 * 11 10 9 38 38 H 1.08996 * 110.76375 * 276.57738 * 12 11 10 39 39 H 1.09010 * 110.76139 * 153.19276 * 12 11 10 40 40 H 1.08995 * 111.21687 * 145.64974 * 14 13 9 41 41 H 1.09000 * 110.89114 * 21.76610 * 14 13 9 42 42 H 1.09000 * 110.24159 * 216.00486 * 15 14 13 43 43 H 1.09000 * 110.24461 * 94.01373 * 15 14 13 44 44 H 1.08993 * 109.47255 * 30.02753 * 17 16 15 45 45 H 1.08999 * 109.46842 * 150.02334 * 17 16 15 46 46 H 1.08993 * 109.47557 * 300.00414 * 18 17 16 47 47 H 1.09007 * 109.46827 * 60.00383 * 18 17 16 48 48 H 0.97004 * 120.00432 * 179.97438 * 22 21 19 49 49 H 1.07993 * 126.45856 * 180.26015 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0949 0.0000 4 7 3.5992 0.6942 0.0058 5 1 4.3726 1.2797 0.0106 6 6 3.6340 -0.6818 0.0009 7 6 4.8387 -1.5186 0.0022 8 8 4.7412 -2.7253 0.1256 9 7 6.0536 -0.9511 -0.1333 10 6 6.3149 0.4770 -0.4024 11 6 7.7165 0.5069 -1.0632 12 6 8.4535 -0.6190 -0.2874 13 6 7.3375 -1.6446 -0.0382 14 6 7.4251 -2.7886 -1.0664 15 6 7.0048 -4.0059 -0.2104 16 7 7.3240 -3.6402 1.1755 17 6 7.4285 -4.5968 2.2801 18 6 6.0597 -4.7615 2.9434 19 6 6.1671 -5.7461 4.0793 20 1 7.1168 -6.2078 4.3057 21 6 5.0529 -6.0574 4.8294 22 7 5.1467 -6.9162 5.8210 23 14 3.4101 -5.2593 4.4373 24 1 2.6756 -6.0956 3.4543 25 1 2.6086 -5.1392 5.6817 26 1 3.6400 -3.9088 3.8643 27 6 7.5082 -2.3121 1.3000 28 8 7.7678 -1.7387 2.3368 29 6 2.3303 -1.1303 0.0006 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 1.9641 2.1198 0.0004 34 1 5.5653 0.8777 -1.0848 35 1 6.3206 1.0436 0.5287 36 1 7.6522 0.2715 -2.1256 37 1 8.2009 1.4707 -0.9076 38 1 8.8500 -0.2427 0.6556 39 1 9.2473 -1.0520 -0.8962 40 1 8.4422 -2.9062 -1.4400 41 1 6.7258 -2.6280 -1.8870 42 1 7.5706 -4.8890 -0.5072 43 1 5.9355 -4.1895 -0.3152 44 1 7.7645 -5.5600 1.8961 45 1 8.1456 -4.2280 3.0135 46 1 5.7237 -3.7984 3.3275 47 1 5.3426 -5.1304 2.2099 48 1 4.3630 -7.1350 6.3490 49 1 2.0060 -2.1604 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271968770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:31 Heat of formation + Delta-G solvation = -29.808095 kcal Electronic energy + Delta-G solvation = -32039.210381 eV Core-core repulsion = 27966.382504 eV Total energy + Delta-G solvation = -4072.827877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.84786 -41.98254 -39.79020 -38.41823 -37.51733 -35.67081 -34.19648 -33.53357 -32.71613 -31.19006 -30.70243 -29.15977 -27.59366 -27.17518 -25.68830 -24.29452 -23.34102 -22.88547 -21.85510 -21.31111 -20.78481 -19.89841 -19.16420 -18.66477 -17.70071 -17.37439 -17.15333 -17.06874 -16.53216 -15.99379 -15.88959 -15.71602 -15.24414 -15.00576 -14.91846 -14.76208 -14.57500 -14.44185 -14.29115 -14.02049 -13.90817 -13.78350 -13.56176 -13.48548 -13.32420 -13.15430 -13.01897 -12.75504 -12.47497 -12.43042 -12.34918 -12.09494 -12.02711 -11.88847 -11.64752 -11.58705 -11.18166 -11.09711 -10.89936 -9.96745 -9.75428 -9.59798 -9.13342 -8.43732 -6.46923 0.34578 1.13222 1.19037 1.20162 1.36767 1.67434 1.93153 2.06635 2.14122 2.22482 2.27565 2.90639 3.12283 3.25770 3.48195 3.61282 3.71281 3.96216 4.03264 4.12128 4.16913 4.19735 4.24960 4.30180 4.35381 4.39289 4.49603 4.59101 4.67025 4.69975 4.73418 4.83868 4.89428 4.95967 4.97222 5.02446 5.05666 5.12110 5.16572 5.19084 5.21474 5.23488 5.29023 5.39752 5.65047 5.74992 5.87464 6.11132 6.19509 6.25001 6.48307 6.57711 6.97560 7.07834 7.18691 8.72439 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008399 B = 0.004992 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.994079 B = 5608.062413 C = 8176.458788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.200 4.200 3 C 0.046 3.954 4 N -0.528 5.528 5 H 0.430 0.570 6 C -0.073 4.073 7 C 0.587 3.413 8 O -0.549 6.549 9 N -0.601 5.601 10 C 0.074 3.926 11 C -0.107 4.107 12 C -0.112 4.112 13 C 0.134 3.866 14 C -0.115 4.115 15 C 0.086 3.914 16 N -0.602 5.602 17 C 0.147 3.853 18 C -0.002 4.002 19 C -0.532 4.532 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.936 5.936 23 Si 0.940 3.060 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.283 1.283 27 C 0.493 3.507 28 O -0.581 6.581 29 C -0.129 4.129 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.219 0.781 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.056 0.944 46 H -0.017 1.017 47 H 0.012 0.988 48 H 0.270 0.730 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 23.968 -24.773 34.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.206 4.206 3 C -0.091 4.091 4 N -0.130 5.130 5 H 0.274 0.726 6 C -0.186 4.186 7 C 0.378 3.622 8 O -0.426 6.426 9 N -0.336 5.336 10 C -0.047 4.047 11 C -0.145 4.145 12 C -0.150 4.150 13 C 0.045 3.955 14 C -0.153 4.153 15 C -0.036 4.036 16 N -0.333 5.333 17 C 0.025 3.975 18 C -0.041 4.041 19 C -0.570 4.570 20 H 0.067 0.933 21 C -0.176 4.176 22 N -0.576 5.576 23 Si 0.765 3.235 24 H -0.185 1.185 25 H -0.195 1.195 26 H -0.208 1.208 27 C 0.280 3.720 28 O -0.461 6.461 29 C -0.157 4.157 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.002 0.998 47 H 0.030 0.970 48 H 0.080 0.920 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.219 23.478 -23.965 33.549 hybrid contribution -0.624 -0.446 1.102 1.342 sum -0.843 23.032 -22.863 32.464 Atomic orbital electron populations 1.20169 0.88144 1.03151 1.01945 1.19845 0.97382 0.91736 1.11632 1.22579 0.81562 1.00957 1.03999 1.42519 1.09493 1.04950 1.56000 0.72551 1.20003 0.94033 0.83853 1.20728 1.17249 0.81802 0.86950 0.76155 1.90832 1.85897 1.14930 1.50968 1.48240 1.03087 1.11069 1.71185 1.23019 1.00830 0.79847 1.01038 1.22836 0.91333 0.99888 1.00393 1.22661 0.95312 0.94727 1.02323 1.21280 0.86583 0.95725 0.91911 1.22996 1.05280 0.90694 0.96340 1.22573 1.02397 0.99636 0.78956 1.48581 1.66546 1.07430 1.10706 1.21190 0.97201 0.91857 0.87271 1.19583 0.95210 0.94382 0.94882 1.21263 0.96655 1.24548 1.14568 0.93260 1.25704 1.02400 0.95031 0.94454 1.70000 1.31573 1.35193 1.20879 0.85824 0.80216 0.79194 0.78283 1.18470 1.19462 1.20830 1.21640 0.75819 0.83096 0.91451 1.90629 1.51433 1.69299 1.34739 1.21366 0.91076 0.99508 1.03754 0.92145 0.89387 0.92403 0.76481 0.87814 0.90799 0.87608 0.86199 0.91179 0.86030 0.85474 0.87948 0.88812 0.90823 0.89031 0.92504 0.99840 0.97005 0.92041 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.37 71.24 0.74 -0.49 16 2 C -0.20 -4.25 6.10 -20.12 -0.12 -4.38 16 3 C 0.05 0.68 11.80 83.48 0.99 1.67 16 4 N -0.53 -9.35 5.37 -183.62 -0.99 -10.34 16 5 H 0.43 4.84 5.37 -92.71 -0.50 4.34 16 6 C -0.07 -2.06 6.82 40.35 0.28 -1.79 16 7 C 0.59 19.36 7.42 86.45 0.64 20.00 16 8 O -0.55 -22.82 12.86 -4.33 -0.06 -22.88 16 9 N -0.60 -15.21 2.86 -774.58 -2.21 -17.42 16 10 C 0.07 1.00 5.27 86.84 0.46 1.46 16 11 C -0.11 -0.84 7.09 32.07 0.23 -0.61 16 12 C -0.11 -1.79 6.06 31.60 0.19 -1.60 16 13 C 0.13 3.46 0.85 3.41 0.00 3.46 16 14 C -0.12 -2.42 5.97 31.51 0.19 -2.23 16 15 C 0.09 2.67 6.39 86.87 0.56 3.23 16 16 N -0.60 -24.32 2.80 -818.12 -2.29 -26.61 16 17 C 0.15 6.95 5.88 86.38 0.51 7.46 16 18 C 0.00 -0.12 4.36 29.85 0.13 0.01 16 19 C -0.53 -34.06 9.66 25.60 0.25 -33.81 16 20 H 0.05 3.31 7.99 -2.91 -0.02 3.29 16 21 C 0.02 1.46 5.47 84.65 0.46 1.92 16 22 N -0.94 -61.93 13.96 21.45 0.30 -61.63 16 23 Si 0.94 51.48 27.47 68.60 1.88 53.37 16 24 H -0.26 -13.50 7.11 99.48 0.71 -12.80 16 25 H -0.27 -13.87 7.11 99.48 0.71 -13.17 16 26 H -0.28 -16.26 6.54 99.48 0.65 -15.61 16 27 C 0.49 19.58 6.55 87.62 0.57 20.16 16 28 O -0.58 -28.11 17.07 -3.05 -0.05 -28.16 16 29 C -0.13 -3.82 10.60 22.57 0.24 -3.58 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.10 0.85 6.24 -2.39 -0.01 0.83 16 35 H 0.07 1.01 7.84 -2.39 -0.02 1.00 16 36 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.07 1.47 7.51 -2.39 -0.02 1.45 16 39 H 0.12 1.23 7.40 -2.38 -0.02 1.21 16 40 H 0.13 1.69 7.46 -2.39 -0.02 1.67 16 41 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.07 2.74 5.63 -2.39 -0.01 2.73 16 44 H 0.09 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.06 2.85 7.94 -2.39 -0.02 2.83 16 46 H -0.02 -1.07 7.20 -2.39 -0.02 -1.09 16 47 H 0.01 0.67 7.57 -2.38 -0.02 0.66 16 48 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 49 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -96.19 387.44 3.31 -92.88 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.42 Total: 9.91 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.30 Total: 10.88 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -5.19 Total: -115.99 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.11 Total: -51.04 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 1.88 Total: 53.37 kcal Total: -96.19 3.31 -92.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.072 kcal (2) G-P(sol) polarization free energy of solvation -96.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds