Wall clock time and date at job start Wed Apr 1 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35447 * 126.06583 * 2 1 4 4 N 1.35529 * 108.87251 * 180.22920 * 3 2 1 5 5 H 0.96997 * 125.68259 * 179.75968 * 4 3 2 6 6 C 1.37654 * 108.64555 * 359.75933 * 4 3 2 7 7 C 1.46670 * 126.23695 * 179.97438 * 6 4 3 8 8 O 1.21701 * 120.00417 * 180.02562 * 7 6 4 9 9 N 1.34781 * 120.00262 * 0.03043 * 7 6 4 10 10 C 1.47134 * 125.60246 * 359.69092 * 9 7 6 11 11 C 1.54576 * 107.33351 * 180.79066 * 10 9 7 12 12 C 1.53704 * 102.69637 * 21.26589 * 11 10 9 13 13 C 1.53208 * 111.54201 * 205.79865 * 12 11 10 14 14 C 1.54800 * 101.39064 * 261.11391 * 13 12 11 15 15 N 1.46928 * 105.54181 * 335.83337 * 14 13 12 16 16 C 1.46498 * 124.37810 * 196.72625 * 15 14 13 17 17 C 1.53002 * 109.47093 * 269.99795 * 16 15 14 18 18 C 1.50705 * 109.47194 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99664 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00336 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99791 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47092 * 60.00088 * 22 20 18 24 24 H 1.48497 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46962 * 300.00261 * 22 20 18 26 26 C 1.34890 * 111.24480 * 16.74653 * 15 14 13 27 27 O 1.21279 * 125.22328 * 178.72513 * 26 15 14 28 28 C 1.47702 * 125.61282 * 179.97438 * 9 7 6 29 29 C 1.37878 * 107.52979 * 0.02562 * 6 4 3 30 30 H 1.08997 * 109.47054 * 270.17021 * 1 2 3 31 31 H 1.08998 * 109.47298 * 30.17291 * 1 2 3 32 32 H 1.09001 * 109.46986 * 150.17678 * 1 2 3 33 33 H 1.08001 * 125.56625 * 359.97007 * 3 2 1 34 34 H 1.08996 * 109.87671 * 300.37677 * 10 9 7 35 35 H 1.09006 * 109.87248 * 61.50710 * 10 9 7 36 36 H 1.09002 * 110.98800 * 262.88500 * 11 10 9 37 37 H 1.09003 * 110.75474 * 139.54151 * 11 10 9 38 38 H 1.09005 * 111.04101 * 19.13893 * 13 12 11 39 39 H 1.09004 * 111.04135 * 143.08767 * 13 12 11 40 40 H 1.09008 * 110.23326 * 216.81976 * 14 13 12 41 41 H 1.09001 * 110.30900 * 94.88951 * 14 13 12 42 42 H 1.09002 * 109.47279 * 29.99765 * 16 15 14 43 43 H 1.09000 * 109.47598 * 150.00122 * 16 15 14 44 44 H 1.08994 * 109.47555 * 300.00404 * 17 16 15 45 45 H 1.09007 * 109.47067 * 60.00504 * 17 16 15 46 46 H 0.96998 * 119.99869 * 179.97438 * 21 20 18 47 47 H 1.08998 * 110.39362 * 276.20601 * 28 9 7 48 48 H 1.09006 * 110.38481 * 38.58577 * 28 9 7 49 49 H 1.08002 * 126.45376 * 179.97438 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3044 1.0949 0.0000 4 7 3.5991 0.6943 -0.0051 5 1 4.3725 1.2797 -0.0096 6 6 3.6340 -0.6818 -0.0030 7 6 4.8386 -1.5186 -0.0075 8 8 4.7372 -2.7313 -0.0055 9 7 6.0580 -0.9444 -0.0139 10 6 6.3233 0.5028 -0.0233 11 6 7.8576 0.6896 -0.0484 12 6 8.3531 -0.6587 -0.5953 13 6 9.7831 -0.9609 -0.1357 14 6 10.6006 -0.5328 -1.3785 15 7 9.6717 -0.6287 -2.5129 16 6 10.0832 -0.6599 -3.9186 17 6 10.1456 0.7684 -4.4636 18 6 10.5694 0.7363 -5.9094 19 1 10.7735 -0.2083 -6.3915 20 6 10.6967 1.9130 -6.6166 21 7 10.4487 3.0634 -6.0294 22 14 11.2214 1.8733 -8.4090 23 1 10.2376 1.0867 -9.1955 24 1 11.2833 3.2597 -8.9376 25 1 12.5610 1.2420 -8.5187 26 6 8.3911 -0.6840 -2.0928 27 8 7.4196 -0.7443 -2.8162 28 6 7.3477 -1.6644 -0.0184 29 6 2.3303 -1.1303 0.0030 30 1 -0.3633 0.0031 1.0276 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3633 -0.8916 -0.5111 33 1 1.9641 2.1199 -0.0005 34 1 5.8783 0.9553 -0.9094 35 1 5.9112 0.9609 0.8758 36 1 8.2459 0.8655 0.9548 37 1 8.1367 1.5037 -0.7173 38 1 10.0498 -0.3603 0.7340 39 1 9.9116 -2.0235 0.0702 40 1 11.4450 -1.2065 -1.5247 41 1 10.9524 0.4926 -1.2651 42 1 11.0668 -1.1228 -3.9991 43 1 9.3613 -1.2378 -4.4958 44 1 9.1621 1.2313 -4.3830 45 1 10.8675 1.3462 -3.8864 46 1 10.5387 3.8912 -6.5269 47 1 7.6300 -1.9443 0.9965 48 1 7.2870 -2.5479 -0.6540 49 1 2.0060 -2.1605 0.0056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271968851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:37 Heat of formation + Delta-G solvation = -16.431904 kcal Electronic energy + Delta-G solvation = -30611.088736 eV Core-core repulsion = 26538.840894 eV Total energy + Delta-G solvation = -4072.247842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69996 -40.97279 -38.96908 -37.09051 -36.10759 -34.05149 -33.01493 -32.33822 -30.65684 -29.85612 -29.50263 -28.31723 -26.76888 -25.42582 -24.64480 -23.32928 -22.03795 -21.86442 -20.49928 -20.26317 -19.62475 -18.81305 -17.72686 -16.69046 -16.42218 -16.27378 -15.84439 -15.66810 -15.35863 -14.89980 -14.68531 -14.49233 -14.14867 -13.90612 -13.69725 -13.44504 -13.16877 -13.12274 -12.99689 -12.80927 -12.73111 -12.67535 -12.46659 -12.43755 -12.28857 -12.12396 -11.72618 -11.69219 -11.39724 -11.21089 -10.97113 -10.92523 -10.74122 -10.17165 -10.05906 -9.91607 -9.43865 -9.19024 -8.99997 -8.81117 -8.42524 -8.26634 -8.10439 -6.08137 -4.11575 1.37552 2.53446 2.68714 2.82575 3.02331 3.29363 3.32276 3.33508 3.34959 3.43519 4.03236 4.13525 4.21165 4.40964 4.53004 4.62010 4.74476 4.82135 4.87733 5.05898 5.06454 5.12232 5.18869 5.19573 5.28379 5.37280 5.48345 5.50265 5.55650 5.57512 5.60199 5.70618 5.73400 5.79123 5.89566 5.91633 5.97083 6.00287 6.12106 6.39702 6.61759 6.73265 6.80969 6.90783 7.19792 7.31751 7.40798 7.58909 7.76298 7.90805 8.03499 8.27375 8.56836 8.94647 9.52835 11.03274 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.002655 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.788023 B =10543.579131 C =11937.870838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.183 4.183 3 C 0.019 3.981 4 N -0.541 5.541 5 H 0.418 0.582 6 C -0.046 4.046 7 C 0.609 3.391 8 O -0.531 6.531 9 N -0.611 5.611 10 C 0.091 3.909 11 C -0.104 4.104 12 C -0.115 4.115 13 C -0.117 4.117 14 C 0.102 3.898 15 N -0.611 5.611 16 C 0.128 3.872 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.526 3.474 27 O -0.517 6.517 28 C 0.137 3.863 29 C -0.105 4.105 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.170 0.830 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.262 0.738 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.166 -2.905 20.091 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.190 4.190 3 C -0.117 4.117 4 N -0.141 5.141 5 H 0.260 0.740 6 C -0.159 4.159 7 C 0.399 3.601 8 O -0.407 6.407 9 N -0.345 5.345 10 C -0.033 4.033 11 C -0.143 4.143 12 C -0.120 4.120 13 C -0.155 4.155 14 C -0.022 4.022 15 N -0.344 5.344 16 C 0.008 3.992 17 C -0.024 4.024 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.311 3.689 27 O -0.392 6.392 28 C 0.015 3.985 29 C -0.131 4.131 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.187 0.813 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.598 -3.371 19.565 22.052 hybrid contribution 0.844 0.655 -1.145 1.566 sum -8.755 -2.716 18.421 20.575 Atomic orbital electron populations 1.20117 0.89750 1.02178 1.01461 1.19489 0.96011 0.92209 1.11267 1.21872 0.82672 0.99607 1.07547 1.42627 1.08526 1.06510 1.56475 0.73998 1.20294 0.95091 0.82301 1.18195 1.16651 0.80474 0.86776 0.76193 1.90835 1.85699 1.13001 1.51177 1.48274 1.05516 1.06987 1.73732 1.22267 0.97767 0.82201 1.01027 1.22410 0.92831 0.96419 1.02602 1.21634 0.96935 0.97558 0.95833 1.22481 0.91666 1.03113 0.98239 1.22112 0.93000 1.02118 0.84958 1.48680 1.06255 1.71782 1.07707 1.21830 0.99118 1.01630 0.76631 1.19390 0.97626 0.89777 0.95650 1.21049 1.46456 0.92805 0.95906 0.92512 1.24992 0.95274 0.95479 0.98461 1.69954 1.48955 0.97512 1.36831 0.86606 0.79192 0.77059 0.84864 1.20108 1.21225 1.20146 1.19881 0.83453 0.76703 0.88871 1.90738 1.37579 1.49681 1.61221 1.21876 0.80652 0.95065 1.00923 1.21181 0.89695 0.99126 1.03134 0.92114 0.92122 0.91853 0.81307 0.90755 0.91184 0.88824 0.88779 0.88785 0.89509 0.90344 0.90838 0.91501 0.91152 0.96225 0.96483 0.92864 0.90147 0.89711 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.37 36.01 0.37 -0.24 16 2 C -0.18 -1.95 6.10 -105.02 -0.64 -2.59 16 3 C 0.02 0.18 11.80 -16.91 -0.20 -0.02 16 4 N -0.54 -5.69 5.61 -9.39 -0.05 -5.75 16 5 H 0.42 3.55 4.92 -40.82 -0.20 3.34 16 6 C -0.05 -0.62 6.89 -81.98 -0.56 -1.19 16 7 C 0.61 9.49 7.82 -12.85 -0.10 9.39 16 8 O -0.53 -9.89 17.16 5.19 0.09 -9.80 16 9 N -0.61 -8.15 3.34 -172.48 -0.58 -8.73 16 10 C 0.09 0.94 5.07 -2.87 -0.01 0.92 16 11 C -0.10 -1.00 5.95 -25.54 -0.15 -1.16 16 12 C -0.12 -1.37 0.67 -155.37 -0.10 -1.48 16 13 C -0.12 -1.01 6.26 -25.68 -0.16 -1.17 16 14 C 0.10 1.20 7.37 -2.86 -0.02 1.18 16 15 N -0.61 -10.47 2.95 -172.56 -0.51 -10.98 16 16 C 0.13 2.64 5.88 -4.04 -0.02 2.62 16 17 C 0.01 0.34 5.30 -27.88 -0.15 0.20 16 18 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.53 9.26 6.73 -11.36 -0.08 9.18 16 27 O -0.52 -11.55 17.51 5.56 0.10 -11.45 16 28 C 0.14 1.70 5.74 -3.14 -0.02 1.68 16 29 C -0.10 -1.36 10.59 -39.12 -0.41 -1.77 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 35 H 0.07 0.51 7.20 -51.93 -0.37 0.14 16 36 H 0.09 0.59 7.74 -51.93 -0.40 0.19 16 37 H 0.09 1.02 8.00 -51.93 -0.42 0.61 16 38 H 0.09 0.55 7.62 -51.93 -0.40 0.16 16 39 H 0.09 0.65 7.97 -51.93 -0.41 0.23 16 40 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.56 7.96 -51.93 -0.41 1.15 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 48 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 49 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -37.49 399.65 -9.47 -46.97 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.58 Total: 0.86 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.68 Total: 2.19 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.40 Total: -51.31 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.19 Total: -21.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.49 -9.47 -46.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.533 kcal (2) G-P(sol) polarization free energy of solvation -37.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds