Wall clock time and date at job start Wed Apr 1 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35447 * 126.06583 * 2 1 4 4 N 1.35529 * 108.87251 * 180.22920 * 3 2 1 5 5 H 0.96997 * 125.68259 * 179.75968 * 4 3 2 6 6 C 1.37654 * 108.64555 * 359.75933 * 4 3 2 7 7 C 1.46670 * 126.23695 * 179.97438 * 6 4 3 8 8 O 1.21701 * 120.00417 * 180.02562 * 7 6 4 9 9 N 1.34781 * 120.00262 * 0.03043 * 7 6 4 10 10 C 1.47134 * 125.60246 * 359.69092 * 9 7 6 11 11 C 1.54576 * 107.33351 * 180.79066 * 10 9 7 12 12 C 1.53704 * 102.69637 * 21.26589 * 11 10 9 13 13 C 1.53208 * 111.54201 * 205.79865 * 12 11 10 14 14 C 1.54800 * 101.39064 * 261.11391 * 13 12 11 15 15 N 1.46928 * 105.54181 * 335.83337 * 14 13 12 16 16 C 1.46498 * 124.37810 * 196.72625 * 15 14 13 17 17 C 1.53002 * 109.47093 * 269.99795 * 16 15 14 18 18 C 1.50705 * 109.47194 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99664 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00336 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99791 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47092 * 60.00088 * 22 20 18 24 24 H 1.48497 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46962 * 300.00261 * 22 20 18 26 26 C 1.34890 * 111.24480 * 16.74653 * 15 14 13 27 27 O 1.21279 * 125.22328 * 178.72513 * 26 15 14 28 28 C 1.47702 * 125.61282 * 179.97438 * 9 7 6 29 29 C 1.37878 * 107.52979 * 0.02562 * 6 4 3 30 30 H 1.08997 * 109.47054 * 270.17021 * 1 2 3 31 31 H 1.08998 * 109.47298 * 30.17291 * 1 2 3 32 32 H 1.09001 * 109.46986 * 150.17678 * 1 2 3 33 33 H 1.08001 * 125.56625 * 359.97007 * 3 2 1 34 34 H 1.08996 * 109.87671 * 300.37677 * 10 9 7 35 35 H 1.09006 * 109.87248 * 61.50710 * 10 9 7 36 36 H 1.09002 * 110.98800 * 262.88500 * 11 10 9 37 37 H 1.09003 * 110.75474 * 139.54151 * 11 10 9 38 38 H 1.09005 * 111.04101 * 19.13893 * 13 12 11 39 39 H 1.09004 * 111.04135 * 143.08767 * 13 12 11 40 40 H 1.09008 * 110.23326 * 216.81976 * 14 13 12 41 41 H 1.09001 * 110.30900 * 94.88951 * 14 13 12 42 42 H 1.09002 * 109.47279 * 29.99765 * 16 15 14 43 43 H 1.09000 * 109.47598 * 150.00122 * 16 15 14 44 44 H 1.08994 * 109.47555 * 300.00404 * 17 16 15 45 45 H 1.09007 * 109.47067 * 60.00504 * 17 16 15 46 46 H 0.96998 * 119.99869 * 179.97438 * 21 20 18 47 47 H 1.08998 * 110.39362 * 276.20601 * 28 9 7 48 48 H 1.09006 * 110.38481 * 38.58577 * 28 9 7 49 49 H 1.08002 * 126.45376 * 179.97438 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3044 1.0949 0.0000 4 7 3.5991 0.6943 -0.0051 5 1 4.3725 1.2797 -0.0096 6 6 3.6340 -0.6818 -0.0030 7 6 4.8386 -1.5186 -0.0075 8 8 4.7372 -2.7313 -0.0055 9 7 6.0580 -0.9444 -0.0139 10 6 6.3233 0.5028 -0.0233 11 6 7.8576 0.6896 -0.0484 12 6 8.3531 -0.6587 -0.5953 13 6 9.7831 -0.9609 -0.1357 14 6 10.6006 -0.5328 -1.3785 15 7 9.6717 -0.6287 -2.5129 16 6 10.0832 -0.6599 -3.9186 17 6 10.1456 0.7684 -4.4636 18 6 10.5694 0.7363 -5.9094 19 1 10.7735 -0.2083 -6.3915 20 6 10.6967 1.9130 -6.6166 21 7 10.4487 3.0634 -6.0294 22 14 11.2214 1.8733 -8.4090 23 1 10.2376 1.0867 -9.1955 24 1 11.2833 3.2597 -8.9376 25 1 12.5610 1.2420 -8.5187 26 6 8.3911 -0.6840 -2.0928 27 8 7.4196 -0.7443 -2.8162 28 6 7.3477 -1.6644 -0.0184 29 6 2.3303 -1.1303 0.0030 30 1 -0.3633 0.0031 1.0276 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3633 -0.8916 -0.5111 33 1 1.9641 2.1199 -0.0005 34 1 5.8783 0.9553 -0.9094 35 1 5.9112 0.9609 0.8758 36 1 8.2459 0.8655 0.9548 37 1 8.1367 1.5037 -0.7173 38 1 10.0498 -0.3603 0.7340 39 1 9.9116 -2.0235 0.0702 40 1 11.4450 -1.2065 -1.5247 41 1 10.9524 0.4926 -1.2651 42 1 11.0668 -1.1228 -3.9991 43 1 9.3613 -1.2378 -4.4958 44 1 9.1621 1.2313 -4.3830 45 1 10.8675 1.3462 -3.8864 46 1 10.5387 3.8912 -6.5269 47 1 7.6300 -1.9443 0.9965 48 1 7.2870 -2.5479 -0.6540 49 1 2.0060 -2.1605 0.0056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271968851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:36 Heat of formation + Delta-G solvation = -42.149369 kcal Electronic energy + Delta-G solvation = -30612.203929 eV Core-core repulsion = 26538.840894 eV Total energy + Delta-G solvation = -4073.363035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.66826 -42.01551 -40.11749 -38.28549 -37.52194 -35.76828 -34.34286 -33.49598 -31.97683 -30.76996 -30.73623 -29.45802 -27.62713 -27.05902 -25.84329 -24.32563 -23.62447 -22.78906 -21.86474 -21.21627 -20.47442 -20.07556 -18.74796 -18.65436 -17.47780 -17.28754 -17.20780 -16.89421 -16.65787 -16.44679 -15.92498 -15.66360 -15.07293 -14.99096 -14.78798 -14.64322 -14.50457 -14.31488 -14.14106 -14.05571 -13.87165 -13.65492 -13.49115 -13.41236 -13.30186 -13.22104 -13.08771 -12.87640 -12.66592 -12.57331 -12.40595 -12.14793 -11.98652 -11.96032 -11.60645 -11.45809 -11.34357 -10.69766 -10.61386 -10.01505 -9.74261 -9.58605 -9.11584 -8.27279 -6.39633 0.37845 1.36489 1.40167 1.47184 1.49576 1.67107 1.73522 2.08874 2.19712 2.26546 2.38549 3.06322 3.15233 3.18779 3.23381 3.64005 3.77761 3.89131 3.99892 4.15066 4.23033 4.27387 4.28019 4.32772 4.33721 4.37529 4.52085 4.56217 4.61687 4.73871 4.74124 4.80271 4.83951 4.89857 4.95384 5.00754 5.03584 5.10763 5.17387 5.23773 5.27485 5.29780 5.43083 5.56527 5.76924 5.78770 5.92407 6.12312 6.24976 6.26934 6.46699 6.74864 6.91931 7.17523 7.30097 8.84517 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.002655 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.788023 B =10543.579131 C =11937.870838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.198 4.198 3 C 0.037 3.963 4 N -0.533 5.533 5 H 0.426 0.574 6 C -0.078 4.078 7 C 0.598 3.402 8 O -0.580 6.580 9 N -0.613 5.613 10 C 0.085 3.915 11 C -0.097 4.097 12 C -0.106 4.106 13 C -0.097 4.097 14 C 0.090 3.910 15 N -0.619 5.619 16 C 0.141 3.859 17 C 0.028 3.972 18 C -0.548 4.548 19 H 0.063 0.937 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C 0.508 3.492 27 O -0.581 6.581 28 C 0.135 3.865 29 C -0.123 4.123 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.211 0.789 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.044 0.956 44 H -0.028 1.028 45 H 0.005 0.995 46 H 0.265 0.735 47 H 0.120 0.880 48 H 0.049 0.951 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.938 -1.588 22.183 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.204 4.204 3 C -0.100 4.100 4 N -0.134 5.134 5 H 0.271 0.729 6 C -0.191 4.191 7 C 0.390 3.610 8 O -0.460 6.460 9 N -0.345 5.345 10 C -0.038 4.038 11 C -0.135 4.135 12 C -0.111 4.111 13 C -0.135 4.135 14 C -0.031 4.031 15 N -0.351 5.351 16 C 0.020 3.980 17 C -0.010 4.010 18 C -0.587 4.587 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.791 3.209 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.184 1.184 26 C 0.296 3.704 27 O -0.461 6.461 28 C 0.013 3.987 29 C -0.150 4.150 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.164 0.836 37 H 0.097 0.903 38 H 0.159 0.841 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.063 0.937 44 H -0.009 1.009 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.138 0.862 48 H 0.068 0.932 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.300 -2.030 21.700 23.322 hybrid contribution 0.421 0.298 -1.836 1.907 sum -7.879 -1.731 19.864 21.439 Atomic orbital electron populations 1.20166 0.87815 1.02834 1.02441 1.19869 0.97489 0.91643 1.11393 1.22580 0.81750 1.01118 1.04540 1.42628 1.09524 1.05395 1.55844 0.72947 1.20132 0.94509 0.83645 1.20776 1.17025 0.81669 0.86552 0.75801 1.90781 1.86537 1.14917 1.53807 1.48387 1.05233 1.08433 1.72478 1.22490 0.98849 0.80514 1.01920 1.22556 0.91900 0.94232 1.04803 1.21598 0.99311 0.99060 0.91092 1.22621 0.87691 1.05272 0.97897 1.22523 0.93129 1.03179 0.84276 1.48804 1.07616 1.71122 1.07536 1.21355 0.99666 0.98020 0.79008 1.19171 0.94273 0.92292 0.95286 1.21517 1.46572 0.93317 0.97257 0.91869 1.25964 0.95091 0.95012 1.03434 1.70083 1.49793 0.98243 1.38823 0.85477 0.79367 0.77370 0.78712 1.19846 1.20585 1.18368 1.21025 0.82637 0.75088 0.91625 1.90688 1.39589 1.52292 1.63530 1.22029 0.80528 0.93913 1.02248 1.21373 0.90418 0.99682 1.03539 0.90924 0.90382 0.92300 0.77188 0.92915 0.87261 0.83606 0.90288 0.84084 0.87628 0.88316 0.90435 0.89014 0.93744 1.00949 0.97648 0.92613 0.86182 0.93246 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.37 71.24 0.74 -0.34 16 2 C -0.20 -4.07 6.10 -20.12 -0.12 -4.19 16 3 C 0.04 0.62 11.80 83.48 0.99 1.60 16 4 N -0.53 -10.77 5.61 -183.63 -1.03 -11.80 16 5 H 0.43 6.70 4.92 -92.71 -0.46 6.24 16 6 C -0.08 -2.19 6.89 40.35 0.28 -1.91 16 7 C 0.60 19.67 7.82 86.44 0.68 20.35 16 8 O -0.58 -23.31 17.16 -4.35 -0.07 -23.39 16 9 N -0.61 -16.45 3.34 -817.81 -2.73 -19.18 16 10 C 0.08 1.65 5.07 86.79 0.44 2.09 16 11 C -0.10 -1.60 5.95 31.37 0.19 -1.42 16 12 C -0.11 -2.36 0.67 -52.74 -0.04 -2.40 16 13 C -0.10 -1.28 6.26 31.28 0.20 -1.08 16 14 C 0.09 1.92 7.37 86.91 0.64 2.56 16 15 N -0.62 -21.47 2.95 -818.18 -2.41 -23.89 16 16 C 0.14 6.06 5.88 86.38 0.51 6.56 16 17 C 0.03 1.49 5.30 29.85 0.16 1.65 16 18 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 19 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 20 C 0.00 0.20 5.46 84.65 0.46 0.66 16 21 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 22 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 C 0.51 18.55 6.73 87.36 0.59 19.14 16 27 O -0.58 -28.06 17.51 -3.03 -0.05 -28.12 16 28 C 0.14 3.24 5.74 86.31 0.50 3.74 16 29 C -0.12 -3.33 10.59 22.57 0.24 -3.10 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.05 1.26 7.12 -2.39 -0.02 1.24 16 35 H 0.11 1.27 7.20 -2.38 -0.02 1.25 16 36 H 0.15 0.96 7.74 -2.39 -0.02 0.94 16 37 H 0.08 1.61 8.00 -2.39 -0.02 1.59 16 38 H 0.14 0.66 7.62 -2.38 -0.02 0.64 16 39 H 0.11 1.08 7.97 -2.39 -0.02 1.06 16 40 H 0.10 1.72 8.14 -2.38 -0.02 1.71 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.04 2.10 7.96 -2.39 -0.02 2.08 16 44 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 45 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 46 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.12 1.95 8.04 -2.39 -0.02 1.93 16 48 H 0.05 1.54 7.94 -2.38 -0.02 1.52 16 49 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -91.26 399.65 3.18 -88.09 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.50 Total: 15.50 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.67 Total: 12.66 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -5.89 Total: -111.16 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.13 Total: -51.50 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -91.26 3.18 -88.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.937 kcal (2) G-P(sol) polarization free energy of solvation -91.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds