Wall clock time and date at job start Wed Apr 1 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35454 * 126.06905 * 2 1 4 4 N 1.35535 * 108.87121 * 179.97438 * 3 2 1 5 5 H 0.97004 * 125.67280 * 180.02562 * 4 3 2 6 6 C 1.37645 * 108.64529 * 359.97438 * 4 3 2 7 7 C 1.46681 * 126.23359 * 180.26133 * 6 4 3 8 8 O 1.21696 * 120.00268 * 179.68474 * 7 6 4 9 9 N 1.34773 * 119.99674 * 359.69207 * 7 6 4 10 10 C 1.47132 * 125.61221 * 0.02562 * 9 7 6 11 11 C 1.54583 * 107.33090 * 179.04390 * 10 9 7 12 12 C 1.53702 * 102.78633 * 339.11805 * 11 10 9 13 13 C 1.53208 * 111.54106 * 153.97198 * 12 11 10 14 14 C 1.54798 * 101.38968 * 98.88412 * 13 12 11 15 15 N 1.46925 * 105.54154 * 24.17025 * 14 13 12 16 16 C 1.46502 * 124.37893 * 163.25526 * 15 14 13 17 17 C 1.52998 * 109.47179 * 89.99511 * 16 15 14 18 18 C 1.50707 * 109.46688 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00082 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99520 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99685 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00244 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47129 * 89.99430 * 22 20 18 24 24 H 1.48497 * 109.46936 * 209.99703 * 22 20 18 25 25 H 1.48502 * 109.46934 * 329.99503 * 22 20 18 26 26 C 1.34889 * 111.24362 * 343.25191 * 15 14 13 27 27 O 1.21286 * 125.21941 * 181.25020 * 26 15 14 28 28 C 1.47710 * 125.60564 * 179.71673 * 9 7 6 29 29 C 1.37875 * 107.53348 * 359.97438 * 6 4 3 30 30 H 1.09001 * 109.46991 * 270.04452 * 1 2 3 31 31 H 1.08999 * 109.47232 * 30.04037 * 1 2 3 32 32 H 1.08996 * 109.47343 * 150.04681 * 1 2 3 33 33 H 1.07997 * 125.56530 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.87534 * 298.48029 * 10 9 7 35 35 H 1.09003 * 109.86931 * 59.61026 * 10 9 7 36 36 H 1.08999 * 110.75375 * 97.44559 * 11 10 9 37 37 H 1.09002 * 110.74841 * 220.61237 * 11 10 9 38 38 H 1.08995 * 111.04282 * 216.91718 * 13 12 11 39 39 H 1.09002 * 111.03704 * 340.81574 * 13 12 11 40 40 H 1.09002 * 110.23052 * 143.18898 * 14 13 12 41 41 H 1.09007 * 110.23223 * 265.06358 * 14 13 12 42 42 H 1.08997 * 109.46859 * 210.00314 * 16 15 14 43 43 H 1.09003 * 109.46859 * 329.99646 * 16 15 14 44 44 H 1.08999 * 109.47153 * 300.00244 * 17 16 15 45 45 H 1.08996 * 109.46764 * 60.00427 * 17 16 15 46 46 H 0.97006 * 119.99599 * 180.02562 * 21 20 18 47 47 H 1.09008 * 110.38987 * 321.42966 * 28 9 7 48 48 H 1.09002 * 110.39353 * 83.81422 * 28 9 7 49 49 H 1.07997 * 126.45730 * 180.02562 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0949 0.0000 4 7 3.5992 0.6941 0.0006 5 1 4.3726 1.2797 0.0011 6 6 3.6340 -0.6819 0.0015 7 6 4.8386 -1.5187 0.0078 8 8 4.7371 -2.7314 0.0138 9 7 6.0579 -0.9445 0.0070 10 6 6.3234 0.5026 0.0008 11 6 7.8577 0.6894 0.0269 12 6 8.3548 -0.6555 0.5804 13 6 9.7834 -0.9605 0.1185 14 6 10.6044 -0.5250 1.3565 15 7 9.6788 -0.6142 2.4940 16 6 10.0943 -0.6375 3.8987 17 6 10.1587 0.7939 4.4352 18 6 10.5866 0.7699 5.8801 19 1 10.7925 -0.1719 6.3667 20 6 10.7163 1.9506 6.5802 21 7 11.0893 1.9297 7.8412 22 14 10.3609 3.5798 5.7382 23 1 8.9267 3.9238 5.9110 24 1 11.2016 4.6437 6.3437 25 1 10.6720 3.4670 4.2905 26 6 8.3970 -0.6720 2.0778 27 8 7.4276 -0.7284 2.8044 28 6 7.3476 -1.6646 0.0188 29 6 2.3302 -1.1303 0.0021 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3634 -0.8904 -0.5131 33 1 1.9642 2.1198 -0.0004 34 1 5.9109 0.9512 -0.9030 35 1 5.8788 0.9647 0.8823 36 1 8.2433 0.8596 -0.9783 37 1 8.1357 1.5093 0.6893 38 1 9.9113 -2.0243 -0.0815 39 1 10.0473 -0.3657 -0.7559 40 1 11.4493 -1.1977 1.5042 41 1 10.9560 0.4996 1.2343 42 1 9.3739 -1.2119 4.4811 43 1 11.0779 -1.1002 3.9790 44 1 10.8790 1.3682 3.8527 45 1 9.1750 1.2566 4.3549 46 1 11.1802 2.7604 8.3339 47 1 7.2873 -2.5412 0.6639 48 1 7.6294 -1.9555 -0.9932 49 1 2.0059 -2.1604 0.0033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271968852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:41 Heat of formation + Delta-G solvation = -12.607122 kcal Electronic energy + Delta-G solvation = -30719.129016 eV Core-core repulsion = 26647.047029 eV Total energy + Delta-G solvation = -4072.081987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.77243 -41.07000 -39.04735 -37.18489 -36.23055 -34.14477 -33.03958 -32.38040 -30.85634 -29.92900 -29.76695 -28.52539 -26.83509 -25.62087 -24.73646 -23.41187 -21.95283 -21.83157 -20.46483 -20.32412 -19.68197 -18.93964 -17.80196 -17.07218 -16.49996 -16.36112 -15.91565 -15.82595 -15.49932 -14.96787 -14.75373 -14.29721 -14.21856 -13.98046 -13.79216 -13.52854 -13.24201 -13.20893 -13.10564 -12.98995 -12.84323 -12.76726 -12.59063 -12.52296 -12.44833 -12.32969 -11.84374 -11.74240 -11.66484 -11.32557 -11.09084 -11.01346 -10.49868 -10.23294 -10.19778 -9.90661 -9.48313 -9.29396 -9.05884 -8.87307 -8.61978 -8.32039 -8.27783 -6.12403 -4.11697 1.31994 2.48487 2.61578 2.70400 2.95926 3.24246 3.26237 3.29612 3.31159 3.32564 3.93802 4.04212 4.10547 4.37269 4.45499 4.52424 4.65280 4.73776 4.80549 4.96483 5.01451 5.07240 5.09444 5.09659 5.21488 5.29953 5.37926 5.43791 5.47644 5.51208 5.54763 5.60769 5.63645 5.73938 5.80990 5.84955 5.87085 5.92693 6.06430 6.23027 6.51096 6.56603 6.70923 6.75802 7.08589 7.13867 7.22091 7.25266 7.50583 7.67906 7.97593 8.39692 8.45414 8.90728 9.49019 11.00741 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.002874 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.016761 B = 9739.885679 C =11047.144881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.183 4.183 3 C 0.019 3.981 4 N -0.542 5.542 5 H 0.417 0.583 6 C -0.046 4.046 7 C 0.609 3.391 8 O -0.529 6.529 9 N -0.612 5.612 10 C 0.091 3.909 11 C -0.104 4.104 12 C -0.116 4.116 13 C -0.117 4.117 14 C 0.101 3.899 15 N -0.614 5.614 16 C 0.137 3.863 17 C -0.023 4.023 18 C -0.522 4.522 19 H 0.074 0.926 20 C 0.070 3.930 21 N -0.899 5.899 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.268 1.268 26 C 0.525 3.475 27 O -0.515 6.515 28 C 0.137 3.863 29 C -0.104 4.104 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.170 0.830 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.017 0.983 45 H 0.014 0.986 46 H 0.264 0.736 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.683 -0.680 -24.361 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.189 4.189 3 C -0.117 4.117 4 N -0.142 5.142 5 H 0.259 0.741 6 C -0.159 4.159 7 C 0.399 3.601 8 O -0.405 6.405 9 N -0.346 5.346 10 C -0.033 4.033 11 C -0.143 4.143 12 C -0.120 4.120 13 C -0.155 4.155 14 C -0.023 4.023 15 N -0.348 5.348 16 C 0.017 3.983 17 C -0.061 4.061 18 C -0.561 4.561 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.538 5.538 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.193 1.193 26 C 0.310 3.690 27 O -0.390 6.390 28 C 0.015 3.985 29 C -0.131 4.131 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.187 0.813 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.035 0.965 45 H 0.033 0.967 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.073 -1.228 -23.705 26.193 hybrid contribution 0.395 1.479 -0.107 1.535 sum -10.678 0.251 -23.812 26.098 Atomic orbital electron populations 1.20121 0.89715 1.02012 1.01697 1.19496 0.96035 0.92198 1.11157 1.21873 0.82662 0.99609 1.07593 1.42617 1.08500 1.06500 1.56597 0.74065 1.20290 0.95088 0.82280 1.18247 1.16649 0.80451 0.86787 0.76185 1.90839 1.85664 1.12993 1.51035 1.48268 1.05534 1.06900 1.73864 1.22269 0.97669 0.82342 1.01026 1.22406 0.92937 0.96347 1.02563 1.21596 0.97065 0.97593 0.95759 1.22481 0.91525 1.03257 0.98209 1.22125 0.93141 1.02076 0.84927 1.48721 1.06333 1.71992 1.07712 1.21615 0.99887 1.00292 0.76542 1.19880 0.96703 0.92311 0.97209 1.20955 1.46289 0.95027 0.93808 0.90768 1.24983 0.94429 0.99119 0.94664 1.69906 1.47533 1.27606 1.08735 0.86756 0.78564 0.83696 0.80097 1.20272 1.21272 1.19253 1.19934 0.83428 0.76660 0.88982 1.90751 1.37755 1.49493 1.60989 1.21830 0.80595 0.94989 1.01096 1.21190 0.89687 0.99162 1.03036 0.91944 0.92177 0.91880 0.81313 0.91089 0.90869 0.88768 0.88986 0.89367 0.88743 0.90094 0.90959 0.90541 0.90821 0.96518 0.96735 0.92593 0.89607 0.90115 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.37 36.00 0.37 -0.22 16 2 C -0.18 -1.87 6.10 -105.02 -0.64 -2.51 16 3 C 0.02 0.17 11.80 -16.91 -0.20 -0.03 16 4 N -0.54 -5.41 5.61 -9.39 -0.05 -5.46 16 5 H 0.42 3.27 4.92 -40.82 -0.20 3.07 16 6 C -0.05 -0.60 6.89 -81.98 -0.56 -1.17 16 7 C 0.61 9.17 7.82 -12.85 -0.10 9.07 16 8 O -0.53 -9.62 17.16 5.19 0.09 -9.53 16 9 N -0.61 -7.75 3.34 -172.61 -0.58 -8.33 16 10 C 0.09 0.86 5.08 -2.87 -0.01 0.85 16 11 C -0.10 -0.90 5.95 -25.53 -0.15 -1.05 16 12 C -0.12 -1.28 0.67 -155.50 -0.10 -1.38 16 13 C -0.12 -0.91 6.26 -25.68 -0.16 -1.07 16 14 C 0.10 1.09 7.37 -2.86 -0.02 1.07 16 15 N -0.61 -9.86 2.95 -172.56 -0.51 -10.37 16 16 C 0.14 2.69 5.88 -4.04 -0.02 2.67 16 17 C -0.02 -0.54 4.37 -27.88 -0.12 -0.66 16 18 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 19 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 22 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 26 C 0.52 8.71 6.72 -11.37 -0.08 8.63 16 27 O -0.51 -10.97 17.50 5.55 0.10 -10.88 16 28 C 0.14 1.61 5.72 -3.26 -0.02 1.59 16 29 C -0.10 -1.31 10.59 -39.12 -0.41 -1.72 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.07 0.47 7.24 -51.93 -0.38 0.09 16 35 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 36 H 0.09 0.51 7.74 -51.93 -0.40 0.11 16 37 H 0.09 0.88 8.01 -51.93 -0.42 0.46 16 38 H 0.09 0.60 7.97 -51.93 -0.41 0.18 16 39 H 0.09 0.47 7.62 -51.93 -0.40 0.08 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.08 1.65 7.96 -51.93 -0.41 1.24 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 45 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.09 1.22 7.93 -51.92 -0.41 0.81 16 48 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 49 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -37.96 396.01 -9.10 -47.06 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.55 Total: 0.48 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.67 Total: 0.91 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.36 Total: -50.96 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.19 Total: -20.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.96 -9.10 -47.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.458 kcal (2) G-P(sol) polarization free energy of solvation -37.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds