Wall clock time and date at job start Wed Apr 1 2020 05:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35454 * 126.06905 * 2 1 4 4 N 1.35535 * 108.87121 * 179.97438 * 3 2 1 5 5 H 0.97004 * 125.67280 * 180.02562 * 4 3 2 6 6 C 1.37645 * 108.64529 * 359.97438 * 4 3 2 7 7 C 1.46681 * 126.23359 * 180.26133 * 6 4 3 8 8 O 1.21696 * 120.00268 * 179.68474 * 7 6 4 9 9 N 1.34773 * 119.99674 * 359.69207 * 7 6 4 10 10 C 1.47132 * 125.61221 * 0.02562 * 9 7 6 11 11 C 1.54583 * 107.33090 * 179.04390 * 10 9 7 12 12 C 1.53702 * 102.78633 * 339.11805 * 11 10 9 13 13 C 1.53208 * 111.54106 * 153.97198 * 12 11 10 14 14 C 1.54798 * 101.38968 * 98.88412 * 13 12 11 15 15 N 1.46925 * 105.54154 * 24.17025 * 14 13 12 16 16 C 1.46502 * 124.37893 * 163.25526 * 15 14 13 17 17 C 1.52998 * 109.47179 * 89.99511 * 16 15 14 18 18 C 1.50707 * 109.46688 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00082 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99520 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99685 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00244 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47129 * 89.99430 * 22 20 18 24 24 H 1.48497 * 109.46936 * 209.99703 * 22 20 18 25 25 H 1.48502 * 109.46934 * 329.99503 * 22 20 18 26 26 C 1.34889 * 111.24362 * 343.25191 * 15 14 13 27 27 O 1.21286 * 125.21941 * 181.25020 * 26 15 14 28 28 C 1.47710 * 125.60564 * 179.71673 * 9 7 6 29 29 C 1.37875 * 107.53348 * 359.97438 * 6 4 3 30 30 H 1.09001 * 109.46991 * 270.04452 * 1 2 3 31 31 H 1.08999 * 109.47232 * 30.04037 * 1 2 3 32 32 H 1.08996 * 109.47343 * 150.04681 * 1 2 3 33 33 H 1.07997 * 125.56530 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.87534 * 298.48029 * 10 9 7 35 35 H 1.09003 * 109.86931 * 59.61026 * 10 9 7 36 36 H 1.08999 * 110.75375 * 97.44559 * 11 10 9 37 37 H 1.09002 * 110.74841 * 220.61237 * 11 10 9 38 38 H 1.08995 * 111.04282 * 216.91718 * 13 12 11 39 39 H 1.09002 * 111.03704 * 340.81574 * 13 12 11 40 40 H 1.09002 * 110.23052 * 143.18898 * 14 13 12 41 41 H 1.09007 * 110.23223 * 265.06358 * 14 13 12 42 42 H 1.08997 * 109.46859 * 210.00314 * 16 15 14 43 43 H 1.09003 * 109.46859 * 329.99646 * 16 15 14 44 44 H 1.08999 * 109.47153 * 300.00244 * 17 16 15 45 45 H 1.08996 * 109.46764 * 60.00427 * 17 16 15 46 46 H 0.97006 * 119.99599 * 180.02562 * 21 20 18 47 47 H 1.09008 * 110.38987 * 321.42966 * 28 9 7 48 48 H 1.09002 * 110.39353 * 83.81422 * 28 9 7 49 49 H 1.07997 * 126.45730 * 180.02562 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0949 0.0000 4 7 3.5992 0.6941 0.0006 5 1 4.3726 1.2797 0.0011 6 6 3.6340 -0.6819 0.0015 7 6 4.8386 -1.5187 0.0078 8 8 4.7371 -2.7314 0.0138 9 7 6.0579 -0.9445 0.0070 10 6 6.3234 0.5026 0.0008 11 6 7.8577 0.6894 0.0269 12 6 8.3548 -0.6555 0.5804 13 6 9.7834 -0.9605 0.1185 14 6 10.6044 -0.5250 1.3565 15 7 9.6788 -0.6142 2.4940 16 6 10.0943 -0.6375 3.8987 17 6 10.1587 0.7939 4.4352 18 6 10.5866 0.7699 5.8801 19 1 10.7925 -0.1719 6.3667 20 6 10.7163 1.9506 6.5802 21 7 11.0893 1.9297 7.8412 22 14 10.3609 3.5798 5.7382 23 1 8.9267 3.9238 5.9110 24 1 11.2016 4.6437 6.3437 25 1 10.6720 3.4670 4.2905 26 6 8.3970 -0.6720 2.0778 27 8 7.4276 -0.7284 2.8044 28 6 7.3476 -1.6646 0.0188 29 6 2.3302 -1.1303 0.0021 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3634 -0.8904 -0.5131 33 1 1.9642 2.1198 -0.0004 34 1 5.9109 0.9512 -0.9030 35 1 5.8788 0.9647 0.8823 36 1 8.2433 0.8596 -0.9783 37 1 8.1357 1.5093 0.6893 38 1 9.9113 -2.0243 -0.0815 39 1 10.0473 -0.3657 -0.7559 40 1 11.4493 -1.1977 1.5042 41 1 10.9560 0.4996 1.2343 42 1 9.3739 -1.2119 4.4811 43 1 11.0779 -1.1002 3.9790 44 1 10.8790 1.3682 3.8527 45 1 9.1750 1.2566 4.3549 46 1 11.1802 2.7604 8.3339 47 1 7.2873 -2.5412 0.6639 48 1 7.6294 -1.9555 -0.9932 49 1 2.0059 -2.1604 0.0033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271968852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:39 Heat of formation + Delta-G solvation = -39.472215 kcal Electronic energy + Delta-G solvation = -30720.293974 eV Core-core repulsion = 26647.047029 eV Total energy + Delta-G solvation = -4073.246945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.67713 -42.02939 -40.12612 -38.29917 -37.54454 -35.75498 -34.38154 -33.54622 -32.19820 -30.89375 -30.75441 -29.53305 -27.65299 -27.14674 -25.81749 -24.27084 -23.34829 -22.78871 -21.84009 -21.22281 -20.47962 -20.11528 -19.10599 -18.70068 -17.47887 -17.28784 -17.21212 -16.94256 -16.66448 -16.25706 -15.94665 -15.68077 -15.09741 -15.00755 -14.88198 -14.73929 -14.67755 -14.45399 -14.15375 -14.05776 -13.87266 -13.65583 -13.58055 -13.43359 -13.33286 -13.24846 -13.12680 -12.97575 -12.63273 -12.41137 -12.34087 -12.14963 -12.03371 -11.80796 -11.63252 -11.55518 -11.34802 -10.85087 -10.69105 -10.01657 -9.74591 -9.62806 -9.11907 -8.36240 -6.42155 0.37510 1.29211 1.31820 1.42883 1.47244 1.66865 1.73064 2.06439 2.19245 2.26511 2.29724 2.98623 3.15599 3.17782 3.23854 3.64475 3.78553 3.89140 4.00542 4.14950 4.19784 4.26897 4.27730 4.32476 4.32793 4.37159 4.46616 4.55039 4.58911 4.72686 4.74340 4.75631 4.82084 4.90152 4.95917 4.99478 5.04473 5.08863 5.12199 5.17607 5.23256 5.26519 5.27730 5.45356 5.69879 5.76563 5.91689 6.16657 6.22692 6.26371 6.47104 6.64513 6.92003 7.14753 7.23177 8.80274 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.002874 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.016761 B = 9739.885679 C =11047.144881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.199 4.199 3 C 0.038 3.962 4 N -0.532 5.532 5 H 0.427 0.573 6 C -0.076 4.076 7 C 0.597 3.403 8 O -0.581 6.581 9 N -0.613 5.613 10 C 0.082 3.918 11 C -0.096 4.096 12 C -0.106 4.106 13 C -0.098 4.098 14 C 0.089 3.911 15 N -0.619 5.619 16 C 0.146 3.854 17 C -0.010 4.010 18 C -0.536 4.536 19 H 0.035 0.965 20 C 0.007 3.993 21 N -0.947 5.947 22 Si 0.953 3.047 23 H -0.278 1.278 24 H -0.277 1.277 25 H -0.240 1.240 26 C 0.508 3.492 27 O -0.579 6.579 28 C 0.134 3.866 29 C -0.124 4.124 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.212 0.788 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.035 0.965 45 H -0.003 1.003 46 H 0.268 0.732 47 H 0.047 0.953 48 H 0.118 0.882 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.040 2.563 -28.737 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.204 4.204 3 C -0.099 4.099 4 N -0.133 5.133 5 H 0.271 0.729 6 C -0.189 4.189 7 C 0.389 3.611 8 O -0.461 6.461 9 N -0.345 5.345 10 C -0.040 4.040 11 C -0.134 4.134 12 C -0.110 4.110 13 C -0.136 4.136 14 C -0.032 4.032 15 N -0.352 5.352 16 C 0.024 3.976 17 C -0.048 4.048 18 C -0.575 4.575 19 H 0.053 0.947 20 C -0.191 4.191 21 N -0.587 5.587 22 Si 0.776 3.224 23 H -0.204 1.204 24 H -0.202 1.202 25 H -0.163 1.163 26 C 0.296 3.704 27 O -0.458 6.458 28 C 0.011 3.989 29 C -0.152 4.152 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.229 0.771 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.163 0.837 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.016 0.984 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.136 0.864 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.356 2.038 -28.131 30.046 hybrid contribution 0.180 0.400 1.383 1.451 sum -10.176 2.439 -26.748 28.722 Atomic orbital electron populations 1.20166 0.87904 1.03144 1.02094 1.19865 0.97456 0.91692 1.11426 1.22580 0.81757 1.01085 1.04484 1.42608 1.09502 1.05326 1.55864 0.72859 1.20110 0.94438 0.83673 1.20718 1.17029 0.81726 0.86531 0.75810 1.90786 1.86551 1.15038 1.53773 1.48383 1.05133 1.08543 1.72482 1.22542 0.99055 0.80372 1.02047 1.22571 0.91672 0.94216 1.04942 1.21561 0.99224 0.99159 0.91103 1.22621 0.87695 1.05135 0.98135 1.22565 0.93062 1.03642 0.83955 1.48805 1.07646 1.71369 1.07332 1.21153 0.99790 0.97552 0.79062 1.19705 0.95663 0.94799 0.94659 1.21298 1.46130 0.93726 0.96325 0.94664 1.26009 0.94087 1.03661 0.95330 1.70061 1.48997 1.28992 1.10643 0.85628 0.78224 0.78186 0.80394 1.20358 1.20223 1.16287 1.21045 0.82609 0.75073 0.91627 1.90708 1.39779 1.52089 1.63258 1.21978 0.80659 0.93975 1.02242 1.21377 0.90538 0.99666 1.03601 0.91851 0.89901 0.91944 0.77109 0.87301 0.92670 0.83660 0.89551 0.88039 0.83902 0.88525 0.89482 0.93981 0.89221 0.94702 0.98424 0.92290 0.93462 0.86396 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.37 71.23 0.74 -0.29 16 2 C -0.20 -3.87 6.10 -20.12 -0.12 -3.99 16 3 C 0.04 0.58 11.80 83.48 0.99 1.56 16 4 N -0.53 -9.80 5.61 -183.62 -1.03 -10.83 16 5 H 0.43 5.72 4.92 -92.71 -0.46 5.27 16 6 C -0.08 -2.05 6.89 40.35 0.28 -1.77 16 7 C 0.60 18.83 7.82 86.45 0.68 19.51 16 8 O -0.58 -22.83 17.16 -4.34 -0.07 -22.90 16 9 N -0.61 -15.26 3.34 -818.23 -2.73 -18.00 16 10 C 0.08 1.36 5.08 86.80 0.44 1.80 16 11 C -0.10 -1.24 5.95 31.37 0.19 -1.05 16 12 C -0.11 -2.06 0.67 -52.82 -0.04 -2.09 16 13 C -0.10 -1.03 6.26 31.28 0.20 -0.84 16 14 C 0.09 1.58 7.37 86.91 0.64 2.22 16 15 N -0.62 -19.33 2.95 -818.19 -2.41 -21.75 16 16 C 0.15 5.91 5.88 86.38 0.51 6.41 16 17 C -0.01 -0.47 4.37 29.85 0.13 -0.34 16 18 C -0.54 -31.30 9.66 25.60 0.25 -31.05 16 19 H 0.04 2.25 7.99 -2.92 -0.02 2.23 16 20 C 0.01 0.39 5.47 84.65 0.46 0.85 16 21 N -0.95 -59.71 13.96 21.45 0.30 -59.42 16 22 Si 0.95 44.20 27.47 68.60 1.88 46.08 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.24 -9.95 6.54 99.48 0.65 -9.29 16 26 C 0.51 16.88 6.72 87.36 0.59 17.46 16 27 O -0.58 -26.10 17.50 -3.05 -0.05 -26.15 16 28 C 0.13 2.98 5.72 86.23 0.49 3.47 16 29 C -0.12 -3.26 10.59 22.57 0.24 -3.02 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.11 0.98 7.24 -2.39 -0.02 0.96 16 35 H 0.06 1.12 7.08 -2.39 -0.02 1.10 16 36 H 0.15 0.47 7.74 -2.39 -0.02 0.45 16 37 H 0.09 1.29 8.01 -2.39 -0.02 1.27 16 38 H 0.10 0.87 7.97 -2.39 -0.02 0.85 16 39 H 0.14 0.26 7.62 -2.39 -0.02 0.25 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.04 1.95 7.96 -2.39 -0.02 1.93 16 43 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.03 1.53 7.20 -2.39 -0.02 1.51 16 45 H 0.00 -0.13 7.57 -2.39 -0.02 -0.15 16 46 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 47 H 0.05 1.42 7.93 -2.38 -0.02 1.40 16 48 H 0.12 1.76 8.04 -2.39 -0.02 1.74 16 49 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -93.13 396.01 2.98 -90.15 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.45 Total: 13.96 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.65 Total: 8.84 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -5.88 Total: -109.99 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.13 Total: -49.05 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -93.13 2.98 -90.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.682 kcal (2) G-P(sol) polarization free energy of solvation -93.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds