Wall clock time and date at job start Wed Apr 1 2020 03:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38671 * 120.79079 * 2 1 4 4 C 1.38183 * 119.16570 * 180.23011 * 3 2 1 5 5 N 1.31886 * 120.76106 * 359.79603 * 4 3 2 6 6 C 1.31854 * 121.72819 * 359.97438 * 5 4 3 7 7 C 1.38228 * 120.76364 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41672 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.46478 * 259.99389 * 8 7 6 10 10 C 1.48066 * 110.99794 * 190.00221 * 9 8 7 11 11 C 1.53388 * 86.02883 * 222.76840 * 10 9 8 12 12 C 1.48064 * 110.99861 * 90.55606 * 9 8 7 13 13 C 1.52558 * 113.84204 * 138.14067 * 11 10 9 14 14 N 1.46267 * 109.56569 * 176.52252 * 13 11 10 15 15 C 1.46506 * 118.71236 * 163.90057 * 14 13 11 16 16 C 1.53000 * 109.46992 * 90.00143 * 15 14 13 17 17 C 1.50696 * 109.47110 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00016 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47494 * 119.99367 * 21 19 17 24 24 H 1.48502 * 109.46977 * 240.00094 * 21 19 17 25 25 C 1.33713 * 122.57214 * 344.18486 * 14 13 11 26 26 O 1.21286 * 118.38533 * 182.95647 * 25 14 13 27 27 C 1.50145 * 123.25143 * 2.72120 * 25 14 13 28 28 O 1.42681 * 113.79317 * 268.80527 * 11 10 9 29 29 H 1.08992 * 109.47050 * 270.23938 * 1 2 3 30 30 H 1.08998 * 109.46991 * 30.24265 * 1 2 3 31 31 H 1.08999 * 109.46873 * 150.24290 * 1 2 3 32 32 H 1.07997 * 120.41892 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.61978 * 179.77409 * 4 3 2 34 34 H 1.08002 * 119.62046 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46614 * 140.00049 * 8 7 6 36 36 H 1.08998 * 109.47359 * 19.99611 * 8 7 6 37 37 H 1.08999 * 113.78278 * 108.49091 * 10 9 8 38 38 H 1.09004 * 113.78202 * 337.04472 * 10 9 8 39 39 H 1.08998 * 113.78441 * 22.95113 * 12 9 8 40 40 H 1.09001 * 113.78398 * 251.50398 * 12 9 8 41 41 H 1.09003 * 109.45054 * 56.49046 * 13 11 10 42 42 H 1.09000 * 109.44067 * 296.54336 * 13 11 10 43 43 H 1.09000 * 109.46803 * 209.99577 * 15 14 13 44 44 H 1.09000 * 109.47214 * 330.00370 * 15 14 13 45 45 H 1.09000 * 109.47214 * 300.00285 * 16 15 14 46 46 H 1.09008 * 109.47142 * 59.99450 * 16 15 14 47 47 H 0.97000 * 119.99667 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.48336 * 222.46321 * 27 25 14 49 49 H 1.08998 * 109.04635 * 102.86453 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1521 -0.0048 5 7 4.2403 0.0001 -0.0054 6 6 3.5983 -1.1516 -0.0009 7 6 2.2166 -1.1909 0.0052 8 6 1.4909 -2.5116 0.0109 9 7 1.0384 -2.8274 -1.3505 10 6 0.1208 -3.9895 -1.3485 11 6 0.8930 -4.4660 -2.5851 12 6 2.0615 -3.6089 -2.0818 13 6 1.1852 -5.9634 -2.5905 14 7 1.8475 -6.3287 -3.8425 15 6 2.5358 -7.6194 -3.9240 16 6 1.5580 -8.6886 -4.4156 17 6 2.2662 -10.0161 -4.5001 18 1 3.3092 -10.0900 -4.2297 19 6 1.5825 -11.1365 -4.9225 20 7 0.3122 -11.0466 -5.2512 21 14 2.4600 -12.7822 -5.0265 22 1 3.8742 -12.6167 -4.6044 23 1 1.7875 -13.7592 -4.1331 24 1 2.4164 -13.2789 -6.4254 25 6 1.8541 -5.5283 -4.9136 26 8 2.3797 -5.9299 -5.9302 27 6 1.2386 -4.1588 -4.9218 28 8 0.3384 -4.0141 -3.8196 29 1 -0.3633 0.0043 1.0276 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5101 32 1 1.6968 2.1377 -0.0004 33 1 4.1583 2.0754 -0.0086 34 1 4.1585 -2.0750 -0.0019 35 1 0.6289 -2.4496 0.6751 36 1 2.1637 -3.2945 0.3609 37 1 -0.9180 -3.7296 -1.5521 38 1 0.2362 -4.6392 -0.4808 39 1 2.7523 -4.1457 -1.4317 40 1 2.5649 -3.0467 -2.8683 41 1 0.2500 -6.5160 -2.4998 42 1 1.8351 -6.2092 -1.7508 43 1 3.3706 -7.5426 -4.6207 44 1 2.9096 -7.8948 -2.9378 45 1 0.7232 -8.7653 -3.7190 46 1 1.1841 -8.4132 -5.4018 47 1 -0.1688 -11.8349 -5.5480 48 1 0.6944 -4.0105 -5.8545 49 1 2.0294 -3.4129 -4.8425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272815666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:04 Heat of formation + Delta-G solvation = -22.776249 kcal Electronic energy + Delta-G solvation = -30401.471515 eV Core-core repulsion = 26328.948561 eV Total energy + Delta-G solvation = -4072.522954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.44087 -41.23929 -40.37183 -37.83102 -37.01825 -35.21627 -35.06483 -33.30718 -32.13155 -30.72799 -29.02571 -28.74971 -27.78925 -27.11555 -26.35308 -24.71417 -23.53773 -23.27597 -22.07180 -21.26509 -19.65268 -18.76971 -18.57926 -17.72135 -17.57401 -17.28835 -17.12821 -16.96879 -16.55427 -16.38312 -16.03317 -15.87076 -15.28710 -15.08610 -14.85111 -14.76791 -14.56216 -14.33081 -14.19269 -13.98123 -13.70596 -13.66506 -13.49864 -13.47090 -13.27445 -13.04579 -12.88842 -12.64645 -12.58580 -12.39190 -12.11323 -12.04112 -11.91134 -11.72739 -11.46137 -11.18801 -10.61169 -10.47494 -10.34601 -10.26391 -9.96578 -9.77596 -9.63788 -8.24120 -6.36680 0.19987 0.38238 1.38002 1.39988 1.44718 1.53106 1.84630 2.37879 2.41348 2.69816 3.00675 3.09454 3.21172 3.32876 3.57250 3.60790 3.79784 3.87678 3.96363 4.01576 4.09310 4.14266 4.24015 4.25933 4.34595 4.40502 4.47153 4.52654 4.58269 4.61710 4.68119 4.70355 4.73491 4.76528 4.83636 4.85852 4.91369 4.95068 5.09030 5.15558 5.28002 5.34670 5.42824 5.52633 5.55441 5.76776 5.82027 5.86046 5.97038 6.14855 6.41632 6.78969 7.04483 7.08463 7.32998 8.88322 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.002161 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.658114 B =12951.234274 C =13074.292952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.180 4.180 4 C 0.083 3.917 5 N -0.523 5.523 6 C 0.091 3.909 7 C -0.133 4.133 8 C 0.063 3.937 9 N -0.469 5.469 10 C 0.037 3.963 11 C 0.064 3.936 12 C -0.012 4.012 13 C 0.094 3.906 14 N -0.597 5.597 15 C 0.129 3.871 16 C 0.026 3.974 17 C -0.541 4.541 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.283 1.283 25 C 0.470 3.530 26 O -0.593 6.593 27 C 0.066 3.934 28 O -0.344 6.344 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.094 0.906 45 H -0.001 1.001 46 H -0.029 1.029 47 H 0.264 0.736 48 H 0.137 0.863 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 25.163 17.423 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.073 4.073 5 N -0.232 5.232 6 C -0.066 4.066 7 C -0.135 4.135 8 C -0.066 4.066 9 N -0.191 5.191 10 C -0.091 4.091 11 C 0.023 3.977 12 C -0.141 4.141 13 C -0.028 4.028 14 N -0.328 5.328 15 C 0.007 3.993 16 C -0.012 4.012 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.209 1.209 25 C 0.259 3.741 26 O -0.475 6.475 27 C -0.013 4.013 28 O -0.262 6.262 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.173 0.827 33 H 0.188 0.812 34 H 0.175 0.825 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.017 0.983 46 H -0.010 1.010 47 H 0.073 0.927 48 H 0.154 0.846 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.234 25.605 16.624 30.529 hybrid contribution -0.069 -1.859 -0.340 1.891 sum 0.165 23.746 16.284 28.793 Atomic orbital electron populations 1.20890 0.88790 1.04310 1.03316 1.20530 0.97992 0.92278 0.93062 1.22335 0.95370 0.99700 1.02502 1.23118 0.92699 0.96413 0.95083 1.67662 1.42353 0.99413 1.13808 1.22878 0.91819 0.96365 0.95523 1.20706 0.94388 0.96155 1.02260 1.21605 1.00093 0.93228 0.91634 1.68611 1.08206 1.29210 1.13116 1.24085 0.99769 0.91359 0.93877 1.23130 0.96963 0.90657 0.86999 1.24643 0.94988 0.94923 0.99516 1.22320 0.98897 0.95279 0.86347 1.47722 1.53208 1.18372 1.13546 1.21527 0.94950 0.81190 1.01669 1.19155 0.94676 0.93390 0.93985 1.21568 0.97503 0.94011 1.44884 0.91555 1.26038 0.95635 1.03698 0.94602 1.70128 1.10437 1.30931 1.45838 0.85317 0.79100 0.78365 0.77748 1.18211 1.19807 1.20895 1.21599 0.80360 0.89221 0.82918 1.90733 1.48306 1.75665 1.32801 1.22699 0.95485 0.90768 0.92397 1.88099 1.39223 1.83748 1.15088 0.89531 0.90581 0.90110 0.82699 0.81211 0.82507 0.87810 0.90956 0.87247 0.86326 0.87987 0.89994 0.91017 0.86704 0.92641 0.88783 0.98253 1.01014 0.92734 0.84568 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.36 71.24 0.67 -0.46 16 2 C -0.03 -0.42 5.92 -19.67 -0.12 -0.53 16 3 C -0.18 -2.37 9.82 22.36 0.22 -2.15 16 4 C 0.08 1.32 11.18 84.67 0.95 2.27 16 5 N -0.52 -10.69 10.36 -195.84 -2.03 -12.72 16 6 C 0.09 1.59 10.83 84.69 0.92 2.51 16 7 C -0.13 -1.95 5.46 -19.77 -0.11 -2.06 16 8 C 0.06 0.67 4.09 85.56 0.35 1.02 16 9 N -0.47 -6.56 5.56 -924.91 -5.15 -11.71 16 10 C 0.04 0.48 7.36 86.20 0.63 1.11 16 11 C 0.06 1.25 1.16 -10.65 -0.01 1.23 16 12 C -0.01 -0.19 7.07 86.21 0.61 0.42 16 13 C 0.09 2.29 5.88 86.28 0.51 2.80 16 14 N -0.60 -21.01 2.83 -825.54 -2.34 -23.35 16 15 C 0.13 5.45 5.21 86.38 0.45 5.90 16 16 C 0.03 1.42 5.29 29.85 0.16 1.58 16 17 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 20 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 21 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 C 0.47 17.53 7.57 87.65 0.66 18.19 16 26 O -0.59 -28.23 16.33 -3.05 -0.05 -28.28 16 27 C 0.07 1.76 6.65 71.06 0.47 2.23 16 28 O -0.34 -8.63 10.66 -148.98 -1.59 -10.22 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.08 0.90 6.53 -2.39 -0.02 0.88 16 32 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 33 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.16 2.26 8.04 -2.91 -0.02 2.24 16 35 H 0.10 0.81 7.34 -2.39 -0.02 0.79 16 36 H 0.07 0.60 7.26 -2.39 -0.02 0.58 16 37 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.12 0.87 7.88 -2.38 -0.02 0.85 16 39 H 0.10 1.29 7.25 -2.39 -0.02 1.27 16 40 H 0.08 1.56 7.01 -2.39 -0.02 1.54 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.11 2.08 7.77 -2.39 -0.02 2.06 16 43 H 0.06 2.57 7.28 -2.39 -0.02 2.56 16 44 H 0.09 3.39 7.96 -2.39 -0.02 3.37 16 45 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H -0.03 -1.84 8.14 -2.38 -0.02 -1.86 16 47 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 48 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 49 H 0.11 2.40 7.15 -2.39 -0.02 2.38 16 Total: -1.00 -81.54 397.89 -0.84 -82.38 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.95 Total: 11.58 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 7.05 Total: 3.38 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -9.23 Total: -105.61 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.64 Total: -38.50 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -81.54 -0.84 -82.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.607 kcal (2) G-P(sol) polarization free energy of solvation -81.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds