Wall clock time and date at job start Wed Apr 1 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39835 * 126.46436 * 2 1 4 4 C 1.35448 * 107.86611 * 180.30364 * 3 2 1 5 5 N 1.35531 * 108.87357 * 359.73728 * 4 3 2 6 6 H 0.97000 * 125.68284 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64443 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23640 * 179.97438 * 7 5 4 9 9 O 1.21694 * 120.00249 * 180.02562 * 8 7 5 10 10 N 1.34783 * 119.99946 * 0.03343 * 8 7 5 11 11 C 1.47139 * 125.60610 * 359.97438 * 10 8 7 12 12 C 1.54581 * 107.32661 * 179.07093 * 11 10 8 13 13 C 1.53699 * 102.78524 * 339.11167 * 12 11 10 14 14 C 1.53203 * 111.55448 * 153.98716 * 13 12 11 15 15 C 1.54800 * 101.39233 * 145.81883 * 14 13 12 16 16 N 1.46926 * 105.54113 * 335.82910 * 15 14 13 17 17 C 1.46503 * 124.37825 * 196.70537 * 16 15 14 18 18 C 1.53000 * 109.47128 * 270.02308 * 17 16 15 19 19 C 1.50700 * 109.46813 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00080 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99779 * 180.02562 * 19 18 17 22 22 N 1.31521 * 120.00169 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00177 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46832 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47150 * 119.99397 * 23 21 19 26 26 H 1.48498 * 109.47232 * 240.00022 * 23 21 19 27 27 C 1.34892 * 111.24358 * 16.75049 * 16 15 14 28 28 O 1.21281 * 125.22025 * 178.72329 * 27 16 15 29 29 C 1.47698 * 125.60903 * 179.97438 * 10 8 7 30 30 H 1.09005 * 109.46914 * 270.14153 * 1 2 3 31 31 H 1.08999 * 109.46745 * 30.13646 * 1 2 3 32 32 H 1.08990 * 109.47531 * 150.14169 * 1 2 3 33 33 H 1.08001 * 126.05954 * 0.02562 * 3 2 1 34 34 H 1.08002 * 125.56383 * 179.70608 * 4 3 2 35 35 H 1.09000 * 109.87132 * 59.63395 * 11 10 8 36 36 H 1.08999 * 109.87331 * 298.50614 * 11 10 8 37 37 H 1.08996 * 110.74862 * 220.78696 * 12 11 10 38 38 H 1.09004 * 110.90375 * 97.50959 * 12 11 10 39 39 H 1.09002 * 111.04038 * 263.84778 * 14 13 12 40 40 H 1.09005 * 111.04126 * 27.78501 * 14 13 12 41 41 H 1.09010 * 110.23064 * 216.81574 * 15 14 13 42 42 H 1.08999 * 110.30716 * 94.89075 * 15 14 13 43 43 H 1.08996 * 109.46652 * 30.02146 * 17 16 15 44 44 H 1.08995 * 109.46905 * 150.01880 * 17 16 15 45 45 H 1.09002 * 109.47109 * 300.00198 * 18 17 16 46 46 H 1.08999 * 109.47140 * 59.99727 * 18 17 16 47 47 H 0.96991 * 119.99843 * 180.02562 * 22 21 19 48 48 H 1.09005 * 110.39147 * 83.79577 * 29 10 8 49 49 H 1.08996 * 110.39453 * 321.40932 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3381 1.1246 0.0000 4 6 3.6218 0.6926 -0.0068 5 7 3.6283 -0.6627 -0.0052 6 1 4.4189 -1.2247 -0.0087 7 6 2.3262 -1.1090 0.0022 8 6 1.8897 -2.5093 0.0056 9 8 0.7024 -2.7765 0.0118 10 7 2.8034 -3.5001 0.0021 11 6 4.2636 -3.3188 -0.0057 12 6 4.9024 -4.7262 0.0166 13 6 3.7694 -5.6052 0.5700 14 6 3.9066 -7.0587 0.1055 15 6 3.3667 -7.8255 1.3371 16 7 3.5558 -6.9200 2.4786 17 6 3.5172 -7.3388 3.8820 18 6 2.0837 -7.2340 4.4063 19 6 2.0443 -7.6642 5.8500 20 1 2.9508 -7.9811 6.3440 21 6 0.8506 -7.6543 6.5399 22 7 -0.2536 -7.2689 5.9382 23 14 0.8014 -8.1882 8.3293 24 1 2.1667 -8.5730 8.7687 25 1 0.3092 -7.0656 9.1675 26 1 -0.1107 -9.3511 8.4741 27 6 3.7684 -5.6530 2.0674 28 8 3.9330 -4.6989 2.7978 29 6 2.5038 -4.9463 0.0055 30 1 -0.3633 0.0025 1.0277 31 1 -0.3633 0.8888 -0.5160 32 1 -0.3634 -0.8911 -0.5116 33 1 2.0137 2.1548 0.0004 34 1 4.4973 1.3250 -0.0131 35 1 4.5720 -2.7577 0.8765 36 1 4.5663 -2.7887 -0.9088 37 1 5.7668 -4.7474 0.6802 38 1 5.1811 -5.0429 -0.9885 39 1 3.2914 -7.2481 -0.7741 40 1 4.9494 -7.3114 -0.0866 41 1 3.9334 -8.7446 1.4871 42 1 2.3086 -8.0527 1.2072 43 1 3.8591 -8.3706 3.9626 44 1 4.1680 -6.6933 4.4717 45 1 1.7418 -6.2022 4.3255 46 1 1.4330 -7.8796 3.8164 47 1 -1.0932 -7.2616 6.4237 48 1 2.3133 -5.2971 -1.0089 49 1 1.6481 -5.1554 0.6474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273316039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:50 Heat of formation + Delta-G solvation = -14.434853 kcal Electronic energy + Delta-G solvation = -31016.547550 eV Core-core repulsion = 26944.386307 eV Total energy + Delta-G solvation = -4072.161244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.67801 -40.94695 -38.88101 -37.08036 -36.10872 -34.01352 -32.82618 -32.28378 -30.70558 -30.12982 -29.05912 -28.06468 -27.04060 -25.35343 -24.61848 -23.12233 -22.01534 -21.61604 -20.88494 -20.48835 -19.11691 -18.72231 -17.80715 -16.68832 -16.44315 -16.27549 -15.88160 -15.59928 -15.08449 -14.85571 -14.66720 -14.42927 -14.06625 -13.89676 -13.68151 -13.33072 -13.23152 -13.09093 -12.88565 -12.73032 -12.68229 -12.61837 -12.40752 -12.31124 -12.27014 -11.97429 -11.73436 -11.61553 -11.36023 -11.14864 -10.97755 -10.95652 -10.66564 -10.02717 -9.94386 -9.87528 -9.40603 -9.13243 -8.91122 -8.81524 -8.37602 -8.21356 -8.08221 -6.01591 -4.05929 1.41116 2.62763 2.73185 2.83189 3.05862 3.30887 3.35222 3.37363 3.40662 3.46056 4.01077 4.19850 4.22912 4.45452 4.57879 4.59955 4.77676 4.86244 4.89234 5.01830 5.09546 5.17992 5.26004 5.27221 5.34275 5.44088 5.45754 5.54832 5.60995 5.68692 5.73000 5.76178 5.82186 5.90664 5.93238 5.99630 6.04154 6.14565 6.34118 6.40164 6.65012 6.77188 6.88078 6.92451 7.24539 7.37991 7.44161 7.65088 7.81159 7.97016 8.11783 8.32244 8.57254 9.00886 9.58371 11.09685 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.003032 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.079218 B = 9231.897911 C =10706.833322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.074 4.074 3 C -0.212 4.212 4 C 0.020 3.980 5 N -0.544 5.544 6 H 0.416 0.584 7 C -0.052 4.052 8 C 0.606 3.394 9 O -0.521 6.521 10 N -0.616 5.616 11 C 0.093 3.907 12 C -0.102 4.102 13 C -0.115 4.115 14 C -0.116 4.116 15 C 0.099 3.901 16 N -0.610 5.610 17 C 0.129 3.871 18 C 0.011 3.989 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.527 3.473 28 O -0.521 6.521 29 C 0.136 3.864 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.261 0.739 48 H 0.082 0.918 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.480 8.891 -19.999 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.236 4.236 4 C -0.116 4.116 5 N -0.144 5.144 6 H 0.259 0.741 7 C -0.164 4.164 8 C 0.397 3.603 9 O -0.397 6.397 10 N -0.350 5.350 11 C -0.030 4.030 12 C -0.141 4.141 13 C -0.119 4.119 14 C -0.154 4.154 15 C -0.024 4.024 16 N -0.343 5.343 17 C 0.009 3.991 18 C -0.027 4.027 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.143 4.143 22 N -0.529 5.529 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 C 0.313 3.687 28 O -0.396 6.396 29 C 0.013 3.987 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.036 0.964 47 H 0.071 0.929 48 H 0.100 0.900 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.792 9.148 -19.472 24.534 hybrid contribution 0.374 -0.530 1.142 1.314 sum 12.166 8.617 -18.330 23.628 Atomic orbital electron populations 1.20352 0.89264 1.02710 1.02477 1.19964 0.95938 0.90688 1.01697 1.20785 0.91813 0.98717 1.12314 1.22009 0.99547 0.83199 1.06881 1.42592 1.07528 1.07388 1.56935 0.74143 1.20108 0.83818 0.93166 1.19347 1.16673 0.84861 0.82417 0.76382 1.90838 1.15400 1.82904 1.50575 1.48323 1.06008 1.06429 1.74262 1.22228 0.80946 0.99055 1.00817 1.22352 0.97241 0.92259 1.02206 1.21618 0.97356 0.97157 0.95807 1.22474 1.02990 0.91621 0.98362 1.22143 1.01735 0.93613 0.84934 1.48684 1.69797 1.08156 1.07701 1.21822 1.01747 0.98849 0.76661 1.19408 0.89527 0.97907 0.95808 1.21094 0.94211 1.44849 0.96104 0.92462 1.25016 0.95674 0.95225 0.98377 1.69987 0.98981 1.47214 1.36685 0.86498 0.78061 0.78268 0.84946 1.19687 1.20917 1.20965 1.19865 0.76777 0.83201 0.88878 1.90705 1.49943 1.38193 1.60796 1.21902 0.96671 0.78954 1.01174 0.91335 0.92078 0.90188 0.84027 0.81292 0.90690 0.91472 0.89195 0.89176 0.88827 0.89393 0.90292 0.90769 0.91520 0.91196 0.96150 0.96444 0.92917 0.89960 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.83 36.01 0.35 -0.83 16 2 C -0.07 -1.02 6.21 -104.16 -0.65 -1.66 16 3 C -0.21 -2.31 10.76 -39.98 -0.43 -2.74 16 4 C 0.02 0.18 11.89 -16.91 -0.20 -0.02 16 5 N -0.54 -5.74 5.61 -9.39 -0.05 -5.79 16 6 H 0.42 3.42 4.92 -40.82 -0.20 3.22 16 7 C -0.05 -0.74 6.89 -81.98 -0.56 -1.30 16 8 C 0.61 9.94 7.82 -12.85 -0.10 9.84 16 9 O -0.52 -10.18 15.08 5.19 0.08 -10.10 16 10 N -0.62 -8.56 3.34 -172.49 -0.58 -9.13 16 11 C 0.09 0.94 4.86 -2.86 -0.01 0.92 16 12 C -0.10 -0.90 5.80 -25.54 -0.15 -1.05 16 13 C -0.12 -1.38 0.67 -155.38 -0.10 -1.49 16 14 C -0.12 -1.02 6.26 -25.68 -0.16 -1.18 16 15 C 0.10 1.22 7.37 -2.86 -0.02 1.20 16 16 N -0.61 -10.67 2.95 -172.56 -0.51 -11.18 16 17 C 0.13 2.70 5.88 -4.04 -0.02 2.68 16 18 C 0.01 0.30 5.30 -27.88 -0.15 0.16 16 19 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 23 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.53 9.34 6.77 -11.36 -0.08 9.26 16 28 O -0.52 -11.42 17.27 5.56 0.10 -11.33 16 29 C 0.14 1.81 5.89 -3.15 -0.02 1.79 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.17 6.49 -51.93 -0.34 0.83 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.08 0.84 7.09 -51.93 -0.37 0.47 16 36 H 0.07 0.48 7.22 -51.93 -0.38 0.10 16 37 H 0.09 0.80 8.00 -51.93 -0.42 0.39 16 38 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 39 H 0.09 0.61 7.63 -51.93 -0.40 0.21 16 40 H 0.09 0.59 7.96 -51.93 -0.41 0.17 16 41 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.54 7.96 -51.93 -0.41 1.13 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 49 H 0.09 1.49 7.94 -51.93 -0.41 1.08 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -38.53 395.34 -9.50 -48.04 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.50 Total: 1.48 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.72 Total: 1.87 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.40 Total: -52.90 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.17 Total: -21.42 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.53 -9.50 -48.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273316039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.602 kcal (2) G-P(sol) polarization free energy of solvation -38.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds