Wall clock time and date at job start Wed Apr 1 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39835 * 126.46436 * 2 1 4 4 C 1.35448 * 107.86611 * 180.30364 * 3 2 1 5 5 N 1.35531 * 108.87357 * 359.73728 * 4 3 2 6 6 H 0.97000 * 125.68284 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64443 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23640 * 179.97438 * 7 5 4 9 9 O 1.21694 * 120.00249 * 180.02562 * 8 7 5 10 10 N 1.34783 * 119.99946 * 0.03343 * 8 7 5 11 11 C 1.47139 * 125.60610 * 359.97438 * 10 8 7 12 12 C 1.54581 * 107.32661 * 179.07093 * 11 10 8 13 13 C 1.53699 * 102.78524 * 339.11167 * 12 11 10 14 14 C 1.53203 * 111.55448 * 153.98716 * 13 12 11 15 15 C 1.54800 * 101.39233 * 145.81883 * 14 13 12 16 16 N 1.46926 * 105.54113 * 335.82910 * 15 14 13 17 17 C 1.46503 * 124.37825 * 196.70537 * 16 15 14 18 18 C 1.53000 * 109.47128 * 270.02308 * 17 16 15 19 19 C 1.50700 * 109.46813 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00080 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99779 * 180.02562 * 19 18 17 22 22 N 1.31521 * 120.00169 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00177 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46832 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47150 * 119.99397 * 23 21 19 26 26 H 1.48498 * 109.47232 * 240.00022 * 23 21 19 27 27 C 1.34892 * 111.24358 * 16.75049 * 16 15 14 28 28 O 1.21281 * 125.22025 * 178.72329 * 27 16 15 29 29 C 1.47698 * 125.60903 * 179.97438 * 10 8 7 30 30 H 1.09005 * 109.46914 * 270.14153 * 1 2 3 31 31 H 1.08999 * 109.46745 * 30.13646 * 1 2 3 32 32 H 1.08990 * 109.47531 * 150.14169 * 1 2 3 33 33 H 1.08001 * 126.05954 * 0.02562 * 3 2 1 34 34 H 1.08002 * 125.56383 * 179.70608 * 4 3 2 35 35 H 1.09000 * 109.87132 * 59.63395 * 11 10 8 36 36 H 1.08999 * 109.87331 * 298.50614 * 11 10 8 37 37 H 1.08996 * 110.74862 * 220.78696 * 12 11 10 38 38 H 1.09004 * 110.90375 * 97.50959 * 12 11 10 39 39 H 1.09002 * 111.04038 * 263.84778 * 14 13 12 40 40 H 1.09005 * 111.04126 * 27.78501 * 14 13 12 41 41 H 1.09010 * 110.23064 * 216.81574 * 15 14 13 42 42 H 1.08999 * 110.30716 * 94.89075 * 15 14 13 43 43 H 1.08996 * 109.46652 * 30.02146 * 17 16 15 44 44 H 1.08995 * 109.46905 * 150.01880 * 17 16 15 45 45 H 1.09002 * 109.47109 * 300.00198 * 18 17 16 46 46 H 1.08999 * 109.47140 * 59.99727 * 18 17 16 47 47 H 0.96991 * 119.99843 * 180.02562 * 22 21 19 48 48 H 1.09005 * 110.39147 * 83.79577 * 29 10 8 49 49 H 1.08996 * 110.39453 * 321.40932 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3381 1.1246 0.0000 4 6 3.6218 0.6926 -0.0068 5 7 3.6283 -0.6627 -0.0052 6 1 4.4189 -1.2247 -0.0087 7 6 2.3262 -1.1090 0.0022 8 6 1.8897 -2.5093 0.0056 9 8 0.7024 -2.7765 0.0118 10 7 2.8034 -3.5001 0.0021 11 6 4.2636 -3.3188 -0.0057 12 6 4.9024 -4.7262 0.0166 13 6 3.7694 -5.6052 0.5700 14 6 3.9066 -7.0587 0.1055 15 6 3.3667 -7.8255 1.3371 16 7 3.5558 -6.9200 2.4786 17 6 3.5172 -7.3388 3.8820 18 6 2.0837 -7.2340 4.4063 19 6 2.0443 -7.6642 5.8500 20 1 2.9508 -7.9811 6.3440 21 6 0.8506 -7.6543 6.5399 22 7 -0.2536 -7.2689 5.9382 23 14 0.8014 -8.1882 8.3293 24 1 2.1667 -8.5730 8.7687 25 1 0.3092 -7.0656 9.1675 26 1 -0.1107 -9.3511 8.4741 27 6 3.7684 -5.6530 2.0674 28 8 3.9330 -4.6989 2.7978 29 6 2.5038 -4.9463 0.0055 30 1 -0.3633 0.0025 1.0277 31 1 -0.3633 0.8888 -0.5160 32 1 -0.3634 -0.8911 -0.5116 33 1 2.0137 2.1548 0.0004 34 1 4.4973 1.3250 -0.0131 35 1 4.5720 -2.7577 0.8765 36 1 4.5663 -2.7887 -0.9088 37 1 5.7668 -4.7474 0.6802 38 1 5.1811 -5.0429 -0.9885 39 1 3.2914 -7.2481 -0.7741 40 1 4.9494 -7.3114 -0.0866 41 1 3.9334 -8.7446 1.4871 42 1 2.3086 -8.0527 1.2072 43 1 3.8591 -8.3706 3.9626 44 1 4.1680 -6.6933 4.4717 45 1 1.7418 -6.2022 4.3255 46 1 1.4330 -7.8796 3.8164 47 1 -1.0932 -7.2616 6.4237 48 1 2.3133 -5.2971 -1.0089 49 1 1.6481 -5.1554 0.6474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273316039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:48 Heat of formation + Delta-G solvation = -41.888733 kcal Electronic energy + Delta-G solvation = -31017.738040 eV Core-core repulsion = 26944.386307 eV Total energy + Delta-G solvation = -4073.351733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.66637 -42.00361 -40.06249 -38.29224 -37.52910 -35.79151 -34.33299 -33.44921 -32.10884 -31.03251 -30.43890 -29.12533 -28.06622 -27.12441 -25.84271 -24.18968 -23.55981 -22.57833 -21.91184 -21.73853 -20.22830 -19.86438 -18.81516 -18.74358 -17.48396 -17.37007 -17.17688 -17.02650 -16.64602 -16.16056 -15.93336 -15.68004 -15.01673 -14.99064 -14.77024 -14.55699 -14.52579 -14.44165 -14.15917 -13.92456 -13.88826 -13.76927 -13.68208 -13.61744 -13.22176 -13.17735 -12.99842 -12.91668 -12.60837 -12.58321 -12.52547 -12.13532 -12.02561 -11.88570 -11.70647 -11.43993 -11.14919 -10.70638 -10.64717 -9.97358 -9.72356 -9.60228 -9.14176 -8.28906 -6.43427 0.38946 1.34444 1.36792 1.46413 1.50390 1.70990 1.80125 2.09398 2.23314 2.25952 2.37018 3.04423 3.16863 3.18877 3.28194 3.69049 3.75985 3.90841 4.05707 4.18443 4.21491 4.22711 4.24670 4.31020 4.35484 4.39914 4.52932 4.56288 4.59580 4.71533 4.78782 4.81206 4.82212 4.85214 4.90895 4.93801 5.02291 5.09312 5.15442 5.18084 5.26944 5.38132 5.39450 5.54072 5.74555 5.76432 5.93835 6.08266 6.24900 6.30607 6.52204 6.73236 6.95658 7.15919 7.27518 8.83582 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.003032 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.079218 B = 9231.897911 C =10706.833322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.097 4.097 3 C -0.227 4.227 4 C 0.047 3.953 5 N -0.534 5.534 6 H 0.427 0.573 7 C -0.089 4.089 8 C 0.591 3.409 9 O -0.576 6.576 10 N -0.619 5.619 11 C 0.085 3.915 12 C -0.090 4.090 13 C -0.106 4.106 14 C -0.095 4.095 15 C 0.086 3.914 16 N -0.620 5.620 17 C 0.144 3.856 18 C 0.023 3.977 19 C -0.544 4.544 20 H 0.070 0.930 21 C -0.004 4.004 22 N -0.936 5.936 23 Si 0.975 3.025 24 H -0.254 1.254 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.509 3.491 28 O -0.578 6.578 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.165 0.835 34 H 0.219 0.781 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.053 0.947 45 H -0.038 1.038 46 H -0.003 1.003 47 H 0.264 0.736 48 H 0.121 0.879 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.313 8.471 -21.846 28.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.251 4.251 4 C -0.090 4.090 5 N -0.135 5.135 6 H 0.271 0.729 7 C -0.201 4.201 8 C 0.383 3.617 9 O -0.457 6.457 10 N -0.352 5.352 11 C -0.038 4.038 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.132 4.132 15 C -0.036 4.036 16 N -0.352 5.352 17 C 0.022 3.978 18 C -0.015 4.015 19 C -0.583 4.583 20 H 0.089 0.911 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.798 3.202 24 H -0.178 1.178 25 H -0.209 1.209 26 H -0.197 1.197 27 C 0.297 3.703 28 O -0.457 6.457 29 C 0.009 3.991 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.182 0.818 34 H 0.236 0.764 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.071 0.929 45 H -0.020 1.020 46 H 0.015 0.985 47 H 0.073 0.927 48 H 0.138 0.862 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.694 8.672 -21.362 27.889 hybrid contribution -0.849 -0.330 1.742 1.966 sum 14.844 8.342 -19.619 25.978 Atomic orbital electron populations 1.20297 0.89923 1.02756 1.01603 1.20309 0.96205 0.92063 1.02019 1.21122 0.92130 0.98983 1.12862 1.22815 1.00580 0.82668 1.02893 1.42593 1.06544 1.08215 1.56194 0.72854 1.19925 0.85714 0.92170 1.22324 1.17171 0.84661 0.83880 0.75970 1.90786 1.17572 1.83910 1.53389 1.48472 1.07566 1.06186 1.72987 1.22533 0.78531 1.00714 1.01976 1.22505 0.95515 0.90031 1.04748 1.21582 0.98064 1.00315 0.91083 1.22617 1.05846 0.87522 0.97238 1.22542 1.01879 0.94414 0.84757 1.48824 1.69290 1.09584 1.07522 1.21339 0.97204 1.00157 0.79069 1.19214 0.92887 0.93588 0.95777 1.21582 0.94877 1.44670 0.97125 0.91136 1.26126 0.95116 0.95003 1.03946 1.70154 0.99836 1.48505 1.39052 0.85260 0.79031 0.77898 0.78015 1.17784 1.20880 1.19743 1.21024 0.75258 0.82331 0.91663 1.90653 1.52232 1.39873 1.62990 1.22036 0.95633 0.79415 1.02061 0.92704 0.89425 0.92628 0.81786 0.76426 0.92340 0.87491 0.88868 0.84039 0.85477 0.85457 0.87493 0.92196 0.88597 0.92890 1.01954 0.98494 0.92730 0.86173 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 9.83 71.24 0.70 -1.82 16 2 C -0.10 -2.74 6.21 -19.56 -0.12 -2.86 16 3 C -0.23 -4.59 10.76 22.01 0.24 -4.35 16 4 C 0.05 0.73 11.89 83.48 0.99 1.72 16 5 N -0.53 -10.48 5.61 -183.62 -1.03 -11.51 16 6 H 0.43 6.10 4.92 -92.71 -0.46 5.64 16 7 C -0.09 -2.62 6.89 40.35 0.28 -2.34 16 8 C 0.59 20.87 7.82 86.45 0.68 21.54 16 9 O -0.58 -25.07 15.08 -4.33 -0.07 -25.14 16 10 N -0.62 -17.67 3.34 -817.84 -2.73 -20.40 16 11 C 0.08 1.55 4.86 86.80 0.42 1.98 16 12 C -0.09 -1.26 5.80 31.37 0.18 -1.08 16 13 C -0.11 -2.39 0.67 -52.75 -0.04 -2.42 16 14 C -0.09 -1.26 6.26 31.28 0.20 -1.07 16 15 C 0.09 1.98 7.37 86.91 0.64 2.62 16 16 N -0.62 -22.23 2.95 -818.18 -2.41 -24.64 16 17 C 0.14 6.27 5.88 86.38 0.51 6.78 16 18 C 0.02 1.33 5.30 29.85 0.16 1.49 16 19 C -0.54 -32.33 9.11 25.60 0.23 -32.09 16 20 H 0.07 3.91 7.74 -2.91 -0.02 3.88 16 21 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 22 N -0.94 -60.69 13.29 21.45 0.28 -60.41 16 23 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 24 H -0.25 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 C 0.51 18.67 6.77 87.36 0.59 19.26 16 28 O -0.58 -27.12 17.27 -3.03 -0.05 -27.17 16 29 C 0.13 3.56 5.89 86.30 0.51 4.07 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.63 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.83 6.49 -2.39 -0.02 1.82 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.22 1.12 8.06 -2.91 -0.02 1.09 16 35 H 0.06 1.28 7.09 -2.39 -0.02 1.26 16 36 H 0.11 1.12 7.22 -2.39 -0.02 1.10 16 37 H 0.09 1.33 8.00 -2.39 -0.02 1.31 16 38 H 0.14 0.63 8.04 -2.38 -0.02 0.61 16 39 H 0.13 0.96 7.63 -2.39 -0.02 0.94 16 40 H 0.13 0.84 7.96 -2.38 -0.02 0.82 16 41 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 44 H 0.05 2.46 7.96 -2.39 -0.02 2.44 16 45 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 48 H 0.12 2.32 7.75 -2.38 -0.02 2.30 16 49 H 0.03 1.29 7.94 -2.39 -0.02 1.27 16 Total: -1.00 -97.54 395.34 3.15 -94.39 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.51 Total: 15.26 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 6.63 Total: 11.64 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -5.89 Total: -116.95 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.12 Total: -52.31 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -97.54 3.15 -94.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273316039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.502 kcal (2) G-P(sol) polarization free energy of solvation -97.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds