Wall clock time and date at job start Wed Apr 1 2020 05:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39836 * 126.46208 * 2 1 4 4 C 1.35447 * 107.87066 * 180.02562 * 3 2 1 5 5 N 1.35534 * 108.87140 * 359.97438 * 4 3 2 6 6 H 0.97000 * 125.67709 * 179.97438 * 5 4 3 7 7 C 1.37653 * 108.64233 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23301 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00065 * 172.68484 * 8 7 5 10 10 N 1.34780 * 119.99877 * 352.69421 * 8 7 5 11 11 C 1.47651 * 125.81465 * 1.94784 * 10 8 7 12 12 C 1.54979 * 104.85532 * 203.99288 * 11 10 8 13 13 C 1.55317 * 101.67060 * 323.40117 * 12 11 10 14 14 C 1.46240 * 125.81206 * 181.63760 * 10 8 7 15 15 C 1.53906 * 110.87619 * 57.74018 * 14 10 8 16 16 C 1.54645 * 101.58847 * 215.21698 * 15 14 10 17 17 N 1.46851 * 105.50027 * 24.77974 * 16 15 14 18 18 C 1.46505 * 124.36431 * 163.10089 * 17 16 15 19 19 C 1.52997 * 109.46919 * 89.99958 * 18 17 16 20 20 C 1.50699 * 109.47143 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99508 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00009 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99865 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00319 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47147 * 89.99861 * 24 22 20 26 26 H 1.48495 * 109.47542 * 209.99900 * 24 22 20 27 27 H 1.48497 * 109.47082 * 330.00126 * 24 22 20 28 28 C 1.34658 * 111.26537 * 343.12609 * 17 16 15 29 29 O 1.21281 * 125.07190 * 180.83198 * 28 17 16 30 30 H 1.09006 * 109.47441 * 269.96448 * 1 2 3 31 31 H 1.09001 * 109.46893 * 29.96284 * 1 2 3 32 32 H 1.08998 * 109.47066 * 149.96333 * 1 2 3 33 33 H 1.08006 * 126.06020 * 0.04589 * 3 2 1 34 34 H 1.08003 * 125.56374 * 180.26301 * 4 3 2 35 35 H 1.08999 * 110.35969 * 322.83125 * 11 10 8 36 36 H 1.09001 * 110.36354 * 85.04039 * 11 10 8 37 37 H 1.08994 * 110.98750 * 81.49956 * 12 11 10 38 38 H 1.09000 * 110.98458 * 205.26771 * 12 11 10 39 39 H 1.09002 * 110.76532 * 153.20319 * 13 12 11 40 40 H 1.09000 * 110.76603 * 276.40684 * 13 12 11 41 41 H 1.09001 * 111.00106 * 333.28680 * 15 14 10 42 42 H 1.08995 * 111.00404 * 97.13988 * 15 14 10 43 43 H 1.08996 * 110.24116 * 143.78846 * 16 15 14 44 44 H 1.08999 * 110.23477 * 265.77712 * 16 15 14 45 45 H 1.08993 * 109.46780 * 210.00283 * 18 17 16 46 46 H 1.08999 * 109.47044 * 330.00355 * 18 17 16 47 47 H 1.09002 * 109.47511 * 300.00359 * 19 18 17 48 48 H 1.09008 * 109.46959 * 60.00061 * 19 18 17 49 49 H 0.96998 * 119.99992 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6928 -0.0006 5 7 3.6284 -0.6625 -0.0004 6 1 4.4191 -1.2244 -0.0010 7 6 2.3262 -1.1089 -0.0002 8 6 1.8898 -2.5092 -0.0005 9 8 0.7108 -2.7792 0.1338 10 7 2.7946 -3.4970 -0.1494 11 6 4.2544 -3.3190 -0.2805 12 6 4.7449 -4.5898 -1.0196 13 6 3.8200 -5.6814 -0.4153 14 6 2.4982 -4.9281 -0.2022 15 6 1.5170 -5.2432 -1.3453 16 6 0.6787 -6.3871 -0.7287 17 7 0.7773 -6.2062 0.7253 18 6 -0.1248 -6.8266 1.6988 19 6 0.4370 -8.1858 2.1205 20 6 -0.4906 -8.8237 3.1224 21 1 -1.3909 -8.3110 3.4275 22 6 -0.1898 -10.0617 3.6496 23 7 -0.9995 -10.6186 4.5236 24 14 1.3678 -10.9479 3.1225 25 1 2.4835 -10.5678 4.0259 26 1 1.1509 -12.4152 3.1942 27 1 1.7074 -10.5653 1.7285 28 6 1.8033 -5.3961 1.0482 29 8 2.1202 -5.0895 2.1780 30 1 -0.3634 -0.0006 1.0277 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8896 -0.5144 33 1 2.0136 2.1548 0.0007 34 1 4.4972 1.3253 0.0033 35 1 4.4766 -2.4287 -0.8688 36 1 4.7178 -3.2480 0.7036 37 1 4.5915 -4.4997 -2.0950 38 1 5.7912 -4.7942 -0.7924 39 1 3.6888 -6.5072 -1.1145 40 1 4.2158 -6.0407 0.5347 41 1 0.8919 -4.3796 -1.5727 42 1 2.0486 -5.5835 -2.2338 43 1 -0.3602 -6.3083 -1.0490 44 1 1.0907 -7.3541 -1.0172 45 1 -0.2134 -6.1827 2.5737 46 1 -1.1075 -6.9638 1.2476 47 1 0.5256 -8.8297 1.2455 48 1 1.4197 -8.0486 2.5717 49 1 -0.7877 -11.4893 4.8947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273317280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:45 Heat of formation + Delta-G solvation = -2.211669 kcal Electronic energy + Delta-G solvation = -31597.400357 eV Core-core repulsion = 27525.769150 eV Total energy + Delta-G solvation = -4071.631207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89803 -40.97784 -38.62544 -37.37664 -36.03727 -33.79386 -32.96126 -32.08918 -31.81570 -30.03560 -29.32519 -27.99100 -27.18825 -25.36459 -24.46997 -23.15544 -22.25896 -21.52122 -21.28821 -20.15978 -19.23345 -18.95609 -17.77930 -17.00493 -16.60501 -16.48880 -15.80004 -15.45469 -15.43898 -14.99571 -14.29731 -14.23523 -14.13442 -14.06302 -13.80654 -13.45458 -13.21788 -13.11344 -13.09041 -12.89127 -12.77314 -12.74347 -12.55173 -12.40080 -12.25755 -11.87114 -11.71407 -11.64468 -11.58346 -11.51997 -11.00617 -10.91058 -10.39430 -10.13327 -10.01150 -9.81540 -9.73281 -9.25970 -9.00459 -8.73681 -8.54221 -8.32749 -8.11875 -6.04851 -4.03534 1.27400 2.38982 2.50858 2.86595 3.07514 3.18938 3.30983 3.37286 3.40145 3.49095 4.00634 4.08654 4.30834 4.39208 4.44771 4.60266 4.62715 4.74443 4.83522 4.88664 4.96297 4.99118 5.11444 5.21987 5.29115 5.31834 5.39372 5.51472 5.57699 5.66379 5.68208 5.68480 5.78095 5.79541 5.86901 5.98820 6.00735 6.16050 6.21378 6.38108 6.51999 6.63632 6.74429 6.85282 7.09659 7.19784 7.24417 7.34046 7.65833 7.76864 7.99547 8.49501 8.59330 8.98880 9.56845 11.08397 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002972 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.448906 B = 9417.766381 C =10123.927207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.072 4.072 3 C -0.211 4.211 4 C 0.020 3.980 5 N -0.547 5.547 6 H 0.417 0.583 7 C -0.052 4.052 8 C 0.605 3.395 9 O -0.509 6.509 10 N -0.599 5.599 11 C 0.086 3.914 12 C -0.125 4.125 13 C -0.114 4.114 14 C 0.134 3.866 15 C -0.136 4.136 16 C 0.105 3.895 17 N -0.605 5.605 18 C 0.139 3.861 19 C -0.023 4.023 20 C -0.520 4.520 21 H 0.074 0.926 22 C 0.069 3.931 23 N -0.901 5.901 24 Si 0.881 3.119 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.267 1.267 28 C 0.520 3.480 29 O -0.523 6.523 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.170 0.830 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.017 0.983 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 20.652 -18.431 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.235 4.235 4 C -0.116 4.116 5 N -0.149 5.149 6 H 0.260 0.740 7 C -0.164 4.164 8 C 0.395 3.605 9 O -0.383 6.383 10 N -0.333 5.333 11 C -0.038 4.038 12 C -0.163 4.163 13 C -0.152 4.152 14 C 0.045 3.955 15 C -0.175 4.175 16 C -0.019 4.019 17 N -0.338 5.338 18 C 0.019 3.981 19 C -0.061 4.061 20 C -0.558 4.558 21 H 0.092 0.908 22 C -0.132 4.132 23 N -0.540 5.540 24 Si 0.709 3.291 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.192 1.192 28 C 0.305 3.695 29 O -0.398 6.398 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.035 0.965 48 H 0.033 0.967 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.829 20.389 -17.561 30.254 hybrid contribution 1.312 -0.771 -0.063 1.523 sum 15.142 19.618 -17.623 30.409 Atomic orbital electron populations 1.20327 0.89180 1.02605 1.02506 1.19969 0.95961 0.90646 1.01527 1.20803 0.91804 0.98762 1.12170 1.22032 0.99579 0.83212 1.06780 1.42749 1.07483 1.07399 1.57228 0.73976 1.20078 0.83835 0.92990 1.19508 1.16714 0.84939 0.82343 0.76478 1.90871 1.15890 1.82556 1.49007 1.48032 1.06889 1.04865 1.73544 1.22669 0.81160 0.99186 1.00736 1.22791 1.00089 0.93146 1.00304 1.22553 0.91855 0.97683 1.03111 1.21141 0.96924 0.81624 0.95834 1.22962 0.97690 0.99940 0.96868 1.22049 1.01318 0.97873 0.80638 1.48455 1.30819 1.47373 1.07173 1.21593 0.91039 0.95320 0.90155 1.19895 0.97224 0.92225 0.96803 1.20974 1.08391 1.03037 1.23439 0.90757 1.24977 0.96555 0.97168 0.94523 1.69909 1.37242 1.17040 1.29782 0.86756 0.84075 0.78628 0.79682 1.20273 1.21332 1.19167 1.20315 0.80845 0.78829 0.89560 1.90691 1.67261 1.58801 1.23088 0.91265 0.92020 0.90422 0.83967 0.81237 0.90662 0.90470 0.89866 0.88994 0.88568 0.89470 0.88941 0.89174 0.90079 0.91001 0.90632 0.90849 0.96462 0.96701 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.76 36.00 0.35 -0.70 16 2 C -0.07 -0.88 6.21 -104.16 -0.65 -1.53 16 3 C -0.21 -1.99 10.76 -39.98 -0.43 -2.42 16 4 C 0.02 0.15 11.89 -16.91 -0.20 -0.05 16 5 N -0.55 -4.80 5.40 -9.39 -0.05 -4.85 16 6 H 0.42 2.60 5.20 -40.82 -0.21 2.39 16 7 C -0.05 -0.65 6.85 -81.98 -0.56 -1.22 16 8 C 0.60 9.09 7.22 -12.85 -0.09 8.99 16 9 O -0.51 -9.29 13.38 5.19 0.07 -9.22 16 10 N -0.60 -7.65 2.90 -158.89 -0.46 -8.11 16 11 C 0.09 0.70 5.50 -2.37 -0.01 0.68 16 12 C -0.13 -0.80 7.09 -24.46 -0.17 -0.98 16 13 C -0.11 -1.15 5.96 -25.18 -0.15 -1.30 16 14 C 0.13 1.82 0.73 -132.41 -0.10 1.73 16 15 C -0.14 -1.59 6.06 -25.39 -0.15 -1.75 16 16 C 0.11 1.45 7.36 -2.99 -0.02 1.43 16 17 N -0.61 -11.42 2.94 -172.50 -0.51 -11.93 16 18 C 0.14 3.05 5.88 -4.04 -0.02 3.02 16 19 C -0.02 -0.58 4.36 -27.88 -0.12 -0.70 16 20 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 21 H 0.07 2.32 7.99 -52.48 -0.42 1.90 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 23 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 24 Si 0.88 22.27 27.47 -169.99 -4.67 17.61 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 28 C 0.52 10.07 6.05 -11.13 -0.07 10.00 16 29 O -0.52 -12.35 17.62 5.56 0.10 -12.26 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.04 6.66 -51.93 -0.35 0.69 16 33 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.08 0.43 5.52 -51.93 -0.29 0.14 16 36 H 0.08 0.63 8.12 -51.93 -0.42 0.20 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.79 7.62 -51.93 -0.40 0.40 16 40 H 0.09 1.03 7.90 -51.93 -0.41 0.62 16 41 H 0.09 1.21 6.58 -51.93 -0.34 0.87 16 42 H 0.09 0.74 7.66 -51.93 -0.40 0.34 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.81 7.94 -51.93 -0.41 1.40 16 46 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 48 H 0.01 0.39 7.57 -51.92 -0.39 0.00 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -39.13 388.63 -9.11 -48.23 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.38 Total: 0.57 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.83 Total: 1.60 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.25 Total: -52.40 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.17 Total: -21.48 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.13 -9.11 -48.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273317280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.023 kcal (2) G-P(sol) polarization free energy of solvation -39.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds