Wall clock time and date at job start Wed Apr 1 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39836 * 126.46208 * 2 1 4 4 C 1.35447 * 107.87066 * 180.02562 * 3 2 1 5 5 N 1.35534 * 108.87140 * 359.97438 * 4 3 2 6 6 H 0.97000 * 125.67709 * 179.97438 * 5 4 3 7 7 C 1.37653 * 108.64233 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23301 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00065 * 172.68484 * 8 7 5 10 10 N 1.34780 * 119.99877 * 352.69421 * 8 7 5 11 11 C 1.47651 * 125.81465 * 1.94784 * 10 8 7 12 12 C 1.54979 * 104.85532 * 203.99288 * 11 10 8 13 13 C 1.55317 * 101.67060 * 323.40117 * 12 11 10 14 14 C 1.46240 * 125.81206 * 181.63760 * 10 8 7 15 15 C 1.53906 * 110.87619 * 57.74018 * 14 10 8 16 16 C 1.54645 * 101.58847 * 215.21698 * 15 14 10 17 17 N 1.46851 * 105.50027 * 24.77974 * 16 15 14 18 18 C 1.46505 * 124.36431 * 163.10089 * 17 16 15 19 19 C 1.52997 * 109.46919 * 89.99958 * 18 17 16 20 20 C 1.50699 * 109.47143 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99508 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00009 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99865 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00319 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47147 * 89.99861 * 24 22 20 26 26 H 1.48495 * 109.47542 * 209.99900 * 24 22 20 27 27 H 1.48497 * 109.47082 * 330.00126 * 24 22 20 28 28 C 1.34658 * 111.26537 * 343.12609 * 17 16 15 29 29 O 1.21281 * 125.07190 * 180.83198 * 28 17 16 30 30 H 1.09006 * 109.47441 * 269.96448 * 1 2 3 31 31 H 1.09001 * 109.46893 * 29.96284 * 1 2 3 32 32 H 1.08998 * 109.47066 * 149.96333 * 1 2 3 33 33 H 1.08006 * 126.06020 * 0.04589 * 3 2 1 34 34 H 1.08003 * 125.56374 * 180.26301 * 4 3 2 35 35 H 1.08999 * 110.35969 * 322.83125 * 11 10 8 36 36 H 1.09001 * 110.36354 * 85.04039 * 11 10 8 37 37 H 1.08994 * 110.98750 * 81.49956 * 12 11 10 38 38 H 1.09000 * 110.98458 * 205.26771 * 12 11 10 39 39 H 1.09002 * 110.76532 * 153.20319 * 13 12 11 40 40 H 1.09000 * 110.76603 * 276.40684 * 13 12 11 41 41 H 1.09001 * 111.00106 * 333.28680 * 15 14 10 42 42 H 1.08995 * 111.00404 * 97.13988 * 15 14 10 43 43 H 1.08996 * 110.24116 * 143.78846 * 16 15 14 44 44 H 1.08999 * 110.23477 * 265.77712 * 16 15 14 45 45 H 1.08993 * 109.46780 * 210.00283 * 18 17 16 46 46 H 1.08999 * 109.47044 * 330.00355 * 18 17 16 47 47 H 1.09002 * 109.47511 * 300.00359 * 19 18 17 48 48 H 1.09008 * 109.46959 * 60.00061 * 19 18 17 49 49 H 0.96998 * 119.99992 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6928 -0.0006 5 7 3.6284 -0.6625 -0.0004 6 1 4.4191 -1.2244 -0.0010 7 6 2.3262 -1.1089 -0.0002 8 6 1.8898 -2.5092 -0.0005 9 8 0.7108 -2.7792 0.1338 10 7 2.7946 -3.4970 -0.1494 11 6 4.2544 -3.3190 -0.2805 12 6 4.7449 -4.5898 -1.0196 13 6 3.8200 -5.6814 -0.4153 14 6 2.4982 -4.9281 -0.2022 15 6 1.5170 -5.2432 -1.3453 16 6 0.6787 -6.3871 -0.7287 17 7 0.7773 -6.2062 0.7253 18 6 -0.1248 -6.8266 1.6988 19 6 0.4370 -8.1858 2.1205 20 6 -0.4906 -8.8237 3.1224 21 1 -1.3909 -8.3110 3.4275 22 6 -0.1898 -10.0617 3.6496 23 7 -0.9995 -10.6186 4.5236 24 14 1.3678 -10.9479 3.1225 25 1 2.4835 -10.5678 4.0259 26 1 1.1509 -12.4152 3.1942 27 1 1.7074 -10.5653 1.7285 28 6 1.8033 -5.3961 1.0482 29 8 2.1202 -5.0895 2.1780 30 1 -0.3634 -0.0006 1.0277 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8896 -0.5144 33 1 2.0136 2.1548 0.0007 34 1 4.4972 1.3253 0.0033 35 1 4.4766 -2.4287 -0.8688 36 1 4.7178 -3.2480 0.7036 37 1 4.5915 -4.4997 -2.0950 38 1 5.7912 -4.7942 -0.7924 39 1 3.6888 -6.5072 -1.1145 40 1 4.2158 -6.0407 0.5347 41 1 0.8919 -4.3796 -1.5727 42 1 2.0486 -5.5835 -2.2338 43 1 -0.3602 -6.3083 -1.0490 44 1 1.0907 -7.3541 -1.0172 45 1 -0.2134 -6.1827 2.5737 46 1 -1.1075 -6.9638 1.2476 47 1 0.5256 -8.8297 1.2455 48 1 1.4197 -8.0486 2.5717 49 1 -0.7877 -11.4893 4.8947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273317280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:43 Heat of formation + Delta-G solvation = -30.102830 kcal Electronic energy + Delta-G solvation = -31598.609808 eV Core-core repulsion = 27525.769150 eV Total energy + Delta-G solvation = -4072.840658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.81614 -41.95625 -39.81597 -38.42319 -37.55925 -35.65672 -34.09377 -33.53481 -32.78325 -31.31587 -30.44451 -29.02550 -28.07480 -27.13752 -25.52480 -24.10880 -23.42767 -22.77547 -22.13847 -21.49822 -20.29010 -19.95799 -19.12282 -18.76125 -17.67802 -17.45295 -17.09557 -16.72663 -16.55947 -16.28406 -15.89698 -15.52854 -15.12442 -15.03839 -14.87106 -14.79425 -14.62831 -14.38008 -14.15242 -13.96164 -13.94809 -13.76549 -13.66132 -13.48033 -13.27169 -13.18471 -13.00880 -12.80136 -12.56760 -12.55872 -12.26025 -12.19170 -12.07636 -11.80904 -11.65343 -11.57567 -11.10054 -11.05385 -10.84789 -9.88197 -9.71538 -9.68132 -9.13726 -8.36633 -6.43001 0.39050 1.28288 1.29593 1.32390 1.43980 1.77214 1.81579 2.06253 2.19005 2.29341 2.30137 2.97707 3.15398 3.29158 3.39480 3.62764 3.67010 3.90138 3.97539 4.11045 4.15201 4.19350 4.23033 4.28531 4.38445 4.40275 4.47326 4.59616 4.62156 4.67615 4.75794 4.82035 4.83885 4.84630 4.91426 4.98794 5.03619 5.05249 5.11345 5.16534 5.23447 5.26906 5.39714 5.41988 5.64899 5.75309 5.93597 6.15002 6.17714 6.30466 6.52470 6.62625 6.96578 7.09637 7.21884 8.80061 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002972 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.448906 B = 9417.766381 C =10123.927207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.094 4.094 3 C -0.228 4.228 4 C 0.050 3.950 5 N -0.535 5.535 6 H 0.428 0.572 7 C -0.086 4.086 8 C 0.593 3.407 9 O -0.561 6.561 10 N -0.601 5.601 11 C 0.074 3.926 12 C -0.107 4.107 13 C -0.115 4.115 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.095 3.905 17 N -0.614 5.614 18 C 0.149 3.851 19 C -0.007 4.007 20 C -0.538 4.538 21 H 0.033 0.967 22 C 0.008 3.992 23 N -0.946 5.946 24 Si 0.954 3.046 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.241 1.241 28 C 0.502 3.498 29 O -0.584 6.584 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.162 0.838 34 H 0.219 0.781 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.037 0.963 46 H 0.085 0.915 47 H 0.037 0.963 48 H 0.000 1.000 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.760 21.391 -22.296 36.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.252 4.252 4 C -0.087 4.087 5 N -0.138 5.138 6 H 0.274 0.726 7 C -0.198 4.198 8 C 0.385 3.615 9 O -0.440 6.440 10 N -0.334 5.334 11 C -0.047 4.047 12 C -0.145 4.145 13 C -0.153 4.153 14 C 0.045 3.955 15 C -0.159 4.159 16 C -0.027 4.027 17 N -0.346 5.346 18 C 0.027 3.973 19 C -0.045 4.045 20 C -0.577 4.577 21 H 0.051 0.949 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.777 3.223 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.164 1.164 28 C 0.289 3.711 29 O -0.464 6.464 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.180 0.820 34 H 0.236 0.764 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.159 0.841 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.056 0.944 46 H 0.103 0.897 47 H 0.055 0.945 48 H 0.018 0.982 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.267 21.124 -21.489 35.237 hybrid contribution -0.149 -0.879 1.249 1.535 sum 18.117 20.245 -20.240 33.878 Atomic orbital electron populations 1.20259 0.90019 1.02533 1.01531 1.20270 0.96084 0.92054 1.01924 1.21118 0.92233 0.98950 1.12889 1.22807 1.00491 0.82731 1.02686 1.42737 1.06499 1.08164 1.56417 0.72556 1.19844 0.85711 0.91864 1.22391 1.17198 0.84709 0.83723 0.75850 1.90827 1.18090 1.83539 1.51554 1.48188 1.08702 1.04060 1.72417 1.23026 0.78284 1.01812 1.01615 1.22860 1.00555 0.89855 1.01200 1.22667 0.90332 0.99275 1.03061 1.21259 0.98715 0.82715 0.92796 1.22990 0.96831 0.98405 0.97630 1.22448 1.02735 1.00127 0.77370 1.48571 1.30111 1.46950 1.08982 1.21144 0.92392 0.93457 0.90308 1.19691 0.95254 0.93568 0.96030 1.21264 1.08041 1.03497 1.24881 0.94854 1.26003 1.00565 0.98030 0.94333 1.70057 1.39605 1.17816 1.31134 0.85611 0.78685 0.77561 0.80491 1.20139 1.19914 1.16416 1.21551 0.80774 0.77952 0.90846 1.90629 1.69024 1.60687 1.26059 0.92731 0.89672 0.92806 0.82006 0.76431 0.87766 0.90856 0.87196 0.86175 0.85783 0.91866 0.90713 0.84149 0.89418 0.88376 0.94398 0.89716 0.94507 0.98192 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.17 9.76 71.23 0.70 -1.48 16 2 C -0.09 -2.30 6.21 -19.57 -0.12 -2.42 16 3 C -0.23 -3.79 10.76 22.01 0.24 -3.56 16 4 C 0.05 0.56 11.89 83.48 0.99 1.55 16 5 N -0.54 -8.00 5.40 -183.62 -0.99 -9.00 16 6 H 0.43 3.93 5.20 -92.71 -0.48 3.44 16 7 C -0.09 -2.15 6.85 40.35 0.28 -1.88 16 8 C 0.59 18.41 7.22 86.45 0.62 19.03 16 9 O -0.56 -22.14 13.38 -4.33 -0.06 -22.19 16 10 N -0.60 -14.91 2.90 -774.82 -2.25 -17.15 16 11 C 0.07 0.99 5.50 86.84 0.48 1.47 16 12 C -0.11 -0.86 7.09 32.07 0.23 -0.63 16 13 C -0.12 -1.96 5.96 31.60 0.19 -1.77 16 14 C 0.13 3.51 0.73 3.36 0.00 3.52 16 15 C -0.12 -2.55 6.06 31.46 0.19 -2.36 16 16 C 0.10 2.49 7.36 86.87 0.64 3.13 16 17 N -0.61 -23.79 2.94 -818.13 -2.41 -26.20 16 18 C 0.15 6.92 5.88 86.38 0.51 7.43 16 19 C -0.01 -0.36 4.36 29.85 0.13 -0.23 16 20 C -0.54 -33.05 9.66 25.60 0.25 -32.80 16 21 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 22 C 0.01 0.50 5.47 84.65 0.46 0.96 16 23 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 24 Si 0.95 45.83 27.47 68.60 1.88 47.72 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 28 C 0.50 20.14 6.05 87.62 0.53 20.67 16 29 O -0.58 -29.54 17.62 -3.03 -0.05 -29.59 16 30 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.59 6.66 -2.39 -0.02 1.58 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.22 0.29 8.06 -2.91 -0.02 0.26 16 35 H 0.10 0.77 5.52 -2.39 -0.01 0.75 16 36 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.12 1.41 7.62 -2.39 -0.02 1.40 16 40 H 0.06 1.40 7.90 -2.39 -0.02 1.38 16 41 H 0.07 1.91 6.58 -2.39 -0.02 1.89 16 42 H 0.14 1.57 7.66 -2.39 -0.02 1.55 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.04 2.00 7.94 -2.39 -0.02 1.98 16 46 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 47 H 0.04 1.74 7.20 -2.39 -0.02 1.72 16 48 H 0.00 -0.02 7.57 -2.38 -0.02 -0.03 16 49 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -95.96 388.63 3.17 -92.79 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.43 Total: 13.94 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.31 Total: 10.63 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -5.35 Total: -113.29 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.11 Total: -51.79 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.72 kcal Total: -95.96 3.17 -92.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273317280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.684 kcal (2) G-P(sol) polarization free energy of solvation -95.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds