Wall clock time and date at job start Wed Apr 1 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38871 * 120.75169 * 2 1 4 4 C 1.38026 * 119.33487 * 179.97438 * 3 2 1 5 5 N 1.31973 * 120.85032 * 359.72654 * 4 3 2 6 6 C 1.32397 * 121.62567 * 0.55616 * 5 4 3 7 7 N 1.38998 * 119.70928 * 179.71217 * 6 5 4 8 8 C 1.48602 * 110.99840 * 119.85447 * 7 6 5 9 9 C 1.54507 * 104.61140 * 201.22801 * 8 7 6 10 10 C 1.53763 * 104.88648 * 23.75776 * 9 8 7 11 11 C 1.48680 * 110.99723 * 4.34982 * 7 6 5 12 12 C 1.52430 * 110.34366 * 119.00153 * 10 9 8 13 13 N 1.46203 * 109.94768 * 169.63803 * 12 10 9 14 14 C 1.46499 * 118.77276 * 162.45968 * 13 12 10 15 15 C 1.52992 * 109.47267 * 90.00185 * 14 13 12 16 16 C 1.50700 * 109.47257 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 359.72512 * 18 16 15 21 21 H 1.48498 * 109.46909 * 90.00086 * 20 18 16 22 22 H 1.48497 * 109.46701 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46867 * 330.00101 * 20 18 16 24 24 C 1.33848 * 122.45328 * 342.73986 * 13 12 10 25 25 O 1.21278 * 118.69557 * 182.15042 * 24 13 12 26 26 C 1.50286 * 122.61801 * 1.90777 * 24 13 12 27 27 O 1.42564 * 110.27278 * 240.89063 * 10 9 8 28 28 C 1.38306 * 120.74449 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46864 * 270.02313 * 1 2 3 30 30 H 1.08995 * 109.46894 * 30.02310 * 1 2 3 31 31 H 1.08998 * 109.47642 * 150.02837 * 1 2 3 32 32 H 1.08005 * 120.33353 * 359.95401 * 3 2 1 33 33 H 1.07994 * 119.57168 * 179.97438 * 4 3 2 34 34 H 1.09000 * 110.40384 * 82.44774 * 8 7 6 35 35 H 1.08991 * 110.40819 * 320.01477 * 8 7 6 36 36 H 1.09001 * 110.35525 * 264.90561 * 9 8 7 37 37 H 1.09003 * 110.44787 * 142.66067 * 9 8 7 38 38 H 1.08997 * 110.42879 * 39.89188 * 11 7 6 39 39 H 1.09001 * 110.43343 * 277.38882 * 11 7 6 40 40 H 1.08997 * 109.38924 * 49.49962 * 12 10 9 41 41 H 1.08996 * 109.39531 * 289.78832 * 12 10 9 42 42 H 1.09004 * 109.47024 * 329.99901 * 14 13 12 43 43 H 1.09005 * 109.47136 * 210.00285 * 14 13 12 44 44 H 1.09004 * 109.47330 * 59.99904 * 15 14 13 45 45 H 1.08997 * 109.47279 * 300.00390 * 15 14 13 46 46 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 47 47 H 1.09006 * 109.53377 * 223.73749 * 26 24 13 48 48 H 1.09004 * 109.14556 * 103.99094 * 26 24 13 49 49 H 1.08005 * 120.44903 * 0.04885 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1934 0.0000 4 6 3.5969 1.1593 0.0005 5 7 4.2455 0.0100 0.0065 6 6 3.6048 -1.1487 0.0011 7 7 4.3280 -2.3357 0.0017 8 6 4.0101 -3.1524 1.2017 9 6 5.2176 -4.1038 1.3568 10 6 6.3777 -3.3891 0.6442 11 6 5.7867 -2.0708 0.1138 12 6 7.5076 -3.1035 1.6266 13 7 8.6954 -2.6525 0.9032 14 6 9.7528 -1.9615 1.6452 15 6 10.7621 -2.9856 2.1678 16 6 11.8502 -2.2747 2.9304 17 1 11.8246 -1.1998 3.0319 18 6 12.8789 -2.9964 3.4979 19 7 13.8282 -2.3760 4.1639 20 14 12.9198 -4.8563 3.3277 21 1 13.6701 -5.2246 2.1003 22 1 13.5902 -5.4471 4.5137 23 1 11.5316 -5.3753 3.2339 24 6 8.8504 -2.8427 -0.4126 25 8 9.8807 -2.4759 -0.9366 26 6 7.8005 -3.4975 -1.2656 27 8 6.8574 -4.1838 -0.4378 28 6 2.2141 -1.1887 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6949 2.1389 -0.0007 33 1 4.1530 2.0851 0.0001 34 1 3.0950 -3.7227 1.0418 35 1 3.9131 -2.5150 2.0804 36 1 5.0103 -5.0607 0.8778 37 1 5.4533 -4.2513 2.4108 38 1 5.9731 -1.2599 0.8178 39 1 6.2063 -1.8317 -0.8634 40 1 7.7443 -4.0122 2.1800 41 1 7.1929 -2.3279 2.3247 42 1 9.3145 -1.4221 2.4849 43 1 10.2588 -1.2568 0.9851 44 1 11.2004 -3.5250 1.3280 45 1 10.2562 -3.6903 2.8277 46 1 14.5521 -2.8838 4.5627 47 1 8.2729 -4.2090 -1.9430 48 1 7.2838 -2.7332 -1.8462 49 1 1.6936 -2.1351 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274674797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:36 Heat of formation + Delta-G solvation = -14.610468 kcal Electronic energy + Delta-G solvation = -30874.902788 eV Core-core repulsion = 26802.733929 eV Total energy + Delta-G solvation = -4072.168859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -41.52506 -40.49795 -38.75449 -36.90278 -35.55848 -34.30064 -33.13654 -32.63725 -30.64588 -29.80937 -29.33785 -28.17490 -27.68067 -25.88721 -24.60005 -23.84220 -22.88428 -21.42166 -21.10592 -20.33702 -18.55362 -17.82560 -17.42052 -16.97899 -16.77937 -16.28388 -16.05725 -15.98194 -15.44122 -15.04255 -14.74898 -14.73684 -14.52243 -14.09779 -13.83593 -13.78482 -13.22538 -13.15855 -13.09786 -13.05111 -12.90363 -12.67589 -12.60238 -12.52505 -12.16820 -11.96943 -11.89072 -11.66914 -11.53968 -11.13464 -10.92533 -10.47887 -10.26146 -10.17641 -10.01748 -9.84166 -9.81990 -9.75901 -9.32538 -9.05102 -8.53411 -8.52867 -8.25748 -6.04200 -4.02631 0.79964 0.92547 2.81731 3.10532 3.13639 3.33470 3.39870 3.43714 3.44968 3.54925 3.97516 4.10698 4.31975 4.34972 4.41401 4.46572 4.63205 4.68968 4.74861 4.77741 4.83527 4.98238 5.06790 5.07782 5.11724 5.23867 5.29560 5.30626 5.32718 5.34703 5.37375 5.48403 5.51660 5.58146 5.61056 5.63004 5.80309 5.93746 5.97909 6.11257 6.15801 6.34530 6.57251 6.66589 6.79547 6.84210 7.24995 7.35611 7.69811 7.73008 7.79826 8.40308 8.51299 8.98978 9.57956 11.08906 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002528 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.691356 B =11075.348532 C =11417.926332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.025 4.025 3 C -0.202 4.202 4 C 0.129 3.871 5 N -0.519 5.519 6 C 0.305 3.695 7 N -0.452 5.452 8 C 0.044 3.956 9 C -0.108 4.108 10 C 0.095 3.905 11 C 0.022 3.978 12 C 0.098 3.902 13 N -0.600 5.600 14 C 0.123 3.877 15 C -0.021 4.021 16 C -0.519 4.519 17 H 0.073 0.927 18 C 0.069 3.931 19 N -0.902 5.902 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.267 1.267 24 C 0.480 3.520 25 O -0.536 6.536 26 C 0.047 3.953 27 O -0.351 6.351 28 C -0.183 4.183 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.018 0.982 45 H 0.015 0.985 46 H 0.263 0.737 47 H 0.130 0.870 48 H 0.088 0.912 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.384 1.461 -7.233 32.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.033 4.033 3 C -0.223 4.223 4 C -0.028 4.028 5 N -0.234 5.234 6 C 0.073 3.927 7 N -0.169 5.169 8 C -0.082 4.082 9 C -0.147 4.147 10 C 0.054 3.946 11 C -0.104 4.104 12 C -0.026 4.026 13 N -0.333 5.333 14 C 0.002 3.998 15 C -0.060 4.060 16 C -0.557 4.557 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.192 1.192 24 C 0.267 3.733 25 O -0.413 6.413 26 C -0.032 4.032 27 O -0.270 6.270 28 C -0.205 4.205 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.174 0.826 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.073 0.927 47 H 0.147 0.853 48 H 0.106 0.894 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -29.951 1.103 -7.915 30.999 hybrid contribution -0.436 -0.253 0.566 0.759 sum -30.388 0.849 -7.349 31.275 Atomic orbital electron populations 1.20830 0.90138 1.03399 1.02925 1.20203 0.96678 0.92614 0.93790 1.21920 0.95517 0.98616 1.06230 1.22569 0.91741 0.95442 0.93050 1.67638 1.41123 0.98078 1.16532 1.20020 0.90396 0.88917 0.93354 1.62540 1.05530 1.11986 1.36841 1.23267 0.99662 0.95215 0.90061 1.22312 0.91363 0.99781 1.01196 1.22192 0.93406 0.91152 0.87856 1.23672 0.86041 0.96819 1.03916 1.22059 0.84546 1.01427 0.94594 1.47733 1.20116 1.57652 1.07794 1.21741 0.87538 0.95825 0.94697 1.19835 0.94654 0.95366 0.96113 1.20961 1.06363 0.95585 1.32791 0.90853 1.24979 0.95198 0.98458 0.94616 1.69910 1.12456 1.35907 1.35764 0.86761 0.78580 0.86171 0.77650 1.20215 1.21370 1.19187 1.20774 0.88994 0.80474 0.83100 1.90766 1.28059 1.50943 1.71538 1.22882 0.88507 0.98693 0.93145 1.88098 1.59700 1.38656 1.40526 1.21419 0.92997 0.99106 1.07025 0.90438 0.90930 0.90962 0.84907 0.82585 0.88648 0.92275 0.88336 0.88789 0.89769 0.88718 0.90202 0.89616 0.91175 0.90032 0.96415 0.96717 0.92693 0.85258 0.89419 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.06 36.01 0.36 -0.15 16 2 C -0.02 -0.18 5.91 -104.36 -0.62 -0.80 16 3 C -0.20 -1.50 9.81 -39.42 -0.39 -1.89 16 4 C 0.13 1.19 11.17 -17.57 -0.20 0.99 16 5 N -0.52 -6.06 8.47 -12.44 -0.11 -6.16 16 6 C 0.30 3.28 6.23 -155.03 -0.97 2.31 16 7 N -0.45 -4.76 5.41 -168.87 -0.91 -5.67 16 8 C 0.04 0.34 5.91 -2.09 -0.01 0.33 16 9 C -0.11 -0.91 6.44 -25.54 -0.16 -1.07 16 10 C 0.09 1.09 1.04 -90.05 -0.09 1.00 16 11 C 0.02 0.27 4.70 -2.37 -0.01 0.25 16 12 C 0.10 1.31 5.13 -4.49 -0.02 1.29 16 13 N -0.60 -10.56 2.80 -174.72 -0.49 -11.05 16 14 C 0.12 2.56 5.23 -4.05 -0.02 2.54 16 15 C -0.02 -0.54 4.36 -27.89 -0.12 -0.66 16 16 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 17 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 20 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 24 C 0.48 8.70 7.41 -11.60 -0.09 8.62 16 25 O -0.54 -11.96 16.37 5.56 0.09 -11.87 16 26 C 0.05 0.64 6.39 35.80 0.23 0.87 16 27 O -0.35 -4.64 10.32 -35.23 -0.36 -5.00 16 28 C -0.18 -1.57 9.10 -39.22 -0.36 -1.92 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 31 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.10 0.57 8.01 -51.93 -0.42 0.15 16 35 H 0.06 0.45 7.97 -51.93 -0.41 0.04 16 36 H 0.10 0.81 7.97 -51.93 -0.41 0.39 16 37 H 0.09 0.64 7.68 -51.93 -0.40 0.24 16 38 H 0.08 1.08 6.73 -51.93 -0.35 0.73 16 39 H 0.09 1.25 5.65 -51.93 -0.29 0.95 16 40 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 41 H 0.09 1.01 7.70 -51.93 -0.40 0.61 16 42 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 43 H 0.08 1.85 7.29 -51.93 -0.38 1.48 16 44 H 0.02 0.47 7.58 -51.93 -0.39 0.08 16 45 H 0.01 0.36 7.19 -51.93 -0.37 -0.02 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 48 H 0.09 1.08 6.33 -51.93 -0.33 0.75 16 49 H 0.13 0.92 7.88 -52.48 -0.41 0.51 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -36.38 388.49 -10.24 -46.62 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.52 Total: -1.34 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.90 Total: -1.78 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.74 Total: -50.35 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.27 Total: -16.88 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.38 -10.24 -46.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274674797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.007 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds