Wall clock time and date at job start Wed Apr 1 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38871 * 120.75169 * 2 1 4 4 C 1.38026 * 119.33487 * 179.97438 * 3 2 1 5 5 N 1.31973 * 120.85032 * 359.72654 * 4 3 2 6 6 C 1.32397 * 121.62567 * 0.55616 * 5 4 3 7 7 N 1.38998 * 119.70928 * 179.71217 * 6 5 4 8 8 C 1.48602 * 110.99840 * 119.85447 * 7 6 5 9 9 C 1.54507 * 104.61140 * 201.22801 * 8 7 6 10 10 C 1.53763 * 104.88648 * 23.75776 * 9 8 7 11 11 C 1.48680 * 110.99723 * 4.34982 * 7 6 5 12 12 C 1.52430 * 110.34366 * 119.00153 * 10 9 8 13 13 N 1.46203 * 109.94768 * 169.63803 * 12 10 9 14 14 C 1.46499 * 118.77276 * 162.45968 * 13 12 10 15 15 C 1.52992 * 109.47267 * 90.00185 * 14 13 12 16 16 C 1.50700 * 109.47257 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 359.72512 * 18 16 15 21 21 H 1.48498 * 109.46909 * 90.00086 * 20 18 16 22 22 H 1.48497 * 109.46701 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46867 * 330.00101 * 20 18 16 24 24 C 1.33848 * 122.45328 * 342.73986 * 13 12 10 25 25 O 1.21278 * 118.69557 * 182.15042 * 24 13 12 26 26 C 1.50286 * 122.61801 * 1.90777 * 24 13 12 27 27 O 1.42564 * 110.27278 * 240.89063 * 10 9 8 28 28 C 1.38306 * 120.74449 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46864 * 270.02313 * 1 2 3 30 30 H 1.08995 * 109.46894 * 30.02310 * 1 2 3 31 31 H 1.08998 * 109.47642 * 150.02837 * 1 2 3 32 32 H 1.08005 * 120.33353 * 359.95401 * 3 2 1 33 33 H 1.07994 * 119.57168 * 179.97438 * 4 3 2 34 34 H 1.09000 * 110.40384 * 82.44774 * 8 7 6 35 35 H 1.08991 * 110.40819 * 320.01477 * 8 7 6 36 36 H 1.09001 * 110.35525 * 264.90561 * 9 8 7 37 37 H 1.09003 * 110.44787 * 142.66067 * 9 8 7 38 38 H 1.08997 * 110.42879 * 39.89188 * 11 7 6 39 39 H 1.09001 * 110.43343 * 277.38882 * 11 7 6 40 40 H 1.08997 * 109.38924 * 49.49962 * 12 10 9 41 41 H 1.08996 * 109.39531 * 289.78832 * 12 10 9 42 42 H 1.09004 * 109.47024 * 329.99901 * 14 13 12 43 43 H 1.09005 * 109.47136 * 210.00285 * 14 13 12 44 44 H 1.09004 * 109.47330 * 59.99904 * 15 14 13 45 45 H 1.08997 * 109.47279 * 300.00390 * 15 14 13 46 46 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 47 47 H 1.09006 * 109.53377 * 223.73749 * 26 24 13 48 48 H 1.09004 * 109.14556 * 103.99094 * 26 24 13 49 49 H 1.08005 * 120.44903 * 0.04885 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1934 0.0000 4 6 3.5969 1.1593 0.0005 5 7 4.2455 0.0100 0.0065 6 6 3.6048 -1.1487 0.0011 7 7 4.3280 -2.3357 0.0017 8 6 4.0101 -3.1524 1.2017 9 6 5.2176 -4.1038 1.3568 10 6 6.3777 -3.3891 0.6442 11 6 5.7867 -2.0708 0.1138 12 6 7.5076 -3.1035 1.6266 13 7 8.6954 -2.6525 0.9032 14 6 9.7528 -1.9615 1.6452 15 6 10.7621 -2.9856 2.1678 16 6 11.8502 -2.2747 2.9304 17 1 11.8246 -1.1998 3.0319 18 6 12.8789 -2.9964 3.4979 19 7 13.8282 -2.3760 4.1639 20 14 12.9198 -4.8563 3.3277 21 1 13.6701 -5.2246 2.1003 22 1 13.5902 -5.4471 4.5137 23 1 11.5316 -5.3753 3.2339 24 6 8.8504 -2.8427 -0.4126 25 8 9.8807 -2.4759 -0.9366 26 6 7.8005 -3.4975 -1.2656 27 8 6.8574 -4.1838 -0.4378 28 6 2.2141 -1.1887 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6949 2.1389 -0.0007 33 1 4.1530 2.0851 0.0001 34 1 3.0950 -3.7227 1.0418 35 1 3.9131 -2.5150 2.0804 36 1 5.0103 -5.0607 0.8778 37 1 5.4533 -4.2513 2.4108 38 1 5.9731 -1.2599 0.8178 39 1 6.2063 -1.8317 -0.8634 40 1 7.7443 -4.0122 2.1800 41 1 7.1929 -2.3279 2.3247 42 1 9.3145 -1.4221 2.4849 43 1 10.2588 -1.2568 0.9851 44 1 11.2004 -3.5250 1.3280 45 1 10.2562 -3.6903 2.8277 46 1 14.5521 -2.8838 4.5627 47 1 8.2729 -4.2090 -1.9430 48 1 7.2838 -2.7332 -1.8462 49 1 1.6936 -2.1351 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274674797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:31 Heat of formation + Delta-G solvation = -39.796526 kcal Electronic energy + Delta-G solvation = -30875.994937 eV Core-core repulsion = 26802.733929 eV Total energy + Delta-G solvation = -4073.261008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -42.47392 -41.40351 -39.85490 -37.85729 -37.09096 -35.13536 -34.86793 -33.61805 -32.45636 -30.60036 -30.21944 -29.02910 -28.66806 -27.04206 -26.24564 -24.51910 -23.76550 -22.94953 -21.80350 -21.60837 -19.76152 -19.10968 -18.88766 -18.24601 -17.57559 -17.34752 -17.13779 -16.85195 -16.75299 -16.20936 -15.94672 -15.55198 -15.50219 -15.36165 -15.09649 -14.80318 -14.70623 -14.47080 -14.35413 -13.93754 -13.68172 -13.63950 -13.48261 -13.40628 -13.27088 -12.98265 -12.85312 -12.80423 -12.64051 -12.46132 -12.36893 -12.04894 -11.90833 -11.72860 -11.57441 -11.37052 -10.89945 -10.82965 -10.45563 -10.43617 -10.40414 -9.78851 -9.21027 -8.35124 -6.39821 0.16868 0.32759 1.30040 1.32314 1.40549 1.43497 1.78670 2.30571 2.45639 2.48524 2.84608 2.99619 3.17386 3.25750 3.35609 3.63845 3.69062 3.86642 3.98920 4.05683 4.12522 4.18536 4.20635 4.25860 4.28940 4.33686 4.40506 4.45026 4.46537 4.60126 4.63636 4.73519 4.76130 4.76868 4.79469 4.81595 4.87034 4.94170 4.99403 5.08344 5.17109 5.27988 5.36290 5.39775 5.45808 5.57983 5.59900 5.81886 6.11148 6.18544 6.34664 6.65788 6.98041 7.04113 7.24652 8.81174 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002528 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.691356 B =11075.348532 C =11417.926332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.027 4.027 3 C -0.198 4.198 4 C 0.108 3.892 5 N -0.555 5.555 6 C 0.282 3.718 7 N -0.457 5.457 8 C 0.045 3.955 9 C -0.101 4.101 10 C 0.096 3.904 11 C 0.030 3.970 12 C 0.091 3.909 13 N -0.600 5.600 14 C 0.134 3.866 15 C -0.010 4.010 16 C -0.531 4.531 17 H 0.038 0.962 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.949 3.051 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.247 1.247 24 C 0.473 3.527 25 O -0.588 6.588 26 C 0.059 3.941 27 O -0.352 6.352 28 C -0.186 4.186 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.053 0.947 44 H -0.002 1.002 45 H 0.028 0.972 46 H 0.268 0.732 47 H 0.145 0.855 48 H 0.103 0.897 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.117 -0.475 -7.045 35.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.035 4.035 3 C -0.219 4.219 4 C -0.048 4.048 5 N -0.270 5.270 6 C 0.051 3.949 7 N -0.175 5.175 8 C -0.080 4.080 9 C -0.139 4.139 10 C 0.055 3.945 11 C -0.097 4.097 12 C -0.032 4.032 13 N -0.331 5.331 14 C 0.012 3.988 15 C -0.048 4.048 16 C -0.570 4.570 17 H 0.057 0.943 18 C -0.188 4.188 19 N -0.585 5.585 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.200 1.200 23 H -0.171 1.171 24 C 0.261 3.739 25 O -0.469 6.469 26 C -0.020 4.020 27 O -0.270 6.270 28 C -0.208 4.208 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.017 0.983 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.163 0.837 48 H 0.121 0.879 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -33.749 -0.836 -7.710 34.629 hybrid contribution 0.673 0.513 0.524 0.996 sum -33.076 -0.322 -7.187 33.849 Atomic orbital electron populations 1.20890 0.87767 1.04397 1.03913 1.20619 0.98346 0.92097 0.92480 1.22221 0.94888 0.99974 1.04807 1.22892 0.92952 0.95311 0.93673 1.67578 1.42493 0.99084 1.17888 1.20247 0.91358 0.88718 0.94595 1.62613 1.04348 1.12364 1.38176 1.23390 1.00373 0.94911 0.89303 1.22384 0.89838 0.99719 1.01978 1.22327 0.93506 0.91494 0.87168 1.23438 0.87472 0.96450 1.02350 1.22403 0.83413 1.02133 0.95204 1.47760 1.20456 1.57025 1.07885 1.21330 0.87987 0.94650 0.94881 1.19672 0.94333 0.95875 0.94968 1.21258 1.08009 0.94432 1.33265 0.94340 1.25931 0.94699 1.04013 0.94168 1.70045 1.13361 1.38168 1.36901 0.85686 0.79663 0.79586 0.77836 1.20300 1.19970 1.17088 1.21652 0.89231 0.79664 0.83324 1.90736 1.30426 1.53176 1.72552 1.22825 0.87489 0.99224 0.92430 1.88110 1.59125 1.38903 1.40878 1.21639 0.92164 1.00412 1.06559 0.89282 0.89828 0.90130 0.82424 0.81595 0.86261 0.92045 0.87513 0.86799 0.91243 0.90670 0.89416 0.88000 0.89433 0.92802 0.98322 0.95325 0.92280 0.83711 0.87904 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.06 71.24 0.72 0.09 16 2 C -0.03 -0.34 5.91 -19.70 -0.12 -0.45 16 3 C -0.20 -2.60 9.81 22.37 0.22 -2.38 16 4 C 0.11 1.95 11.17 84.62 0.95 2.89 16 5 N -0.56 -12.95 8.47 -193.27 -1.64 -14.59 16 6 C 0.28 5.78 6.23 133.07 0.83 6.61 16 7 N -0.46 -8.95 5.41 -688.19 -3.72 -12.67 16 8 C 0.05 0.59 5.91 86.49 0.51 1.10 16 9 C -0.10 -1.38 6.44 31.36 0.20 -1.18 16 10 C 0.10 2.03 1.04 -10.42 -0.01 2.02 16 11 C 0.03 0.70 4.70 86.26 0.41 1.11 16 12 C 0.09 2.29 5.13 86.25 0.44 2.73 16 13 N -0.60 -21.03 2.80 -825.61 -2.31 -23.34 16 14 C 0.13 5.71 5.23 86.38 0.45 6.16 16 15 C -0.01 -0.51 4.36 29.85 0.13 -0.38 16 16 C -0.53 -31.88 9.66 25.60 0.25 -31.63 16 17 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 18 C 0.01 0.57 5.47 84.66 0.46 1.04 16 19 N -0.94 -60.48 13.96 21.45 0.30 -60.18 16 20 Si 0.95 46.37 27.47 68.60 1.88 48.25 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 24 C 0.47 17.30 7.41 87.67 0.65 17.95 16 25 O -0.59 -27.22 16.37 -3.02 -0.05 -27.27 16 26 C 0.06 1.57 6.39 71.11 0.45 2.03 16 27 O -0.35 -8.59 10.32 -148.98 -1.54 -10.13 16 28 C -0.19 -2.79 9.10 22.50 0.20 -2.59 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.30 8.10 -2.39 -0.02 0.28 16 31 H 0.08 0.34 8.10 -2.39 -0.02 0.32 16 32 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.12 0.98 8.01 -2.39 -0.02 0.96 16 35 H 0.06 0.78 7.97 -2.39 -0.02 0.76 16 36 H 0.11 1.34 7.97 -2.39 -0.02 1.33 16 37 H 0.11 1.12 7.68 -2.39 -0.02 1.10 16 38 H 0.07 1.79 6.73 -2.39 -0.02 1.77 16 39 H 0.08 2.00 5.65 -2.39 -0.01 1.98 16 40 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 41 H 0.10 2.23 7.70 -2.39 -0.02 2.22 16 42 H 0.09 3.38 7.94 -2.38 -0.02 3.36 16 43 H 0.05 2.59 7.29 -2.38 -0.02 2.57 16 44 H 0.00 -0.09 7.58 -2.38 -0.02 -0.11 16 45 H 0.03 1.35 7.19 -2.39 -0.02 1.34 16 46 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 47 H 0.15 3.40 8.14 -2.38 -0.02 3.38 16 48 H 0.10 2.47 6.33 -2.39 -0.02 2.45 16 49 H 0.15 1.63 7.88 -2.91 -0.02 1.61 16 Total: -1.00 -81.96 388.49 0.56 -81.40 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.89 Total: 13.42 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 6.75 Total: 5.11 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -7.38 Total: -110.78 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.59 Total: -37.40 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.25 kcal Total: -81.96 0.56 -81.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274674797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.606 kcal (2) G-P(sol) polarization free energy of solvation -81.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds