Wall clock time and date at job start Wed Apr 1 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46172 * 2 1 4 4 N 1.46498 * 109.47160 * 60.02551 * 3 2 1 5 5 C 1.34780 * 119.99787 * 179.97438 * 4 3 2 6 6 O 1.21551 * 119.99982 * 0.02562 * 5 4 3 7 7 C 1.47863 * 119.99731 * 179.97438 * 5 4 3 8 8 C 1.39700 * 120.07378 * 0.02562 * 7 5 4 9 9 C 1.38058 * 120.14531 * 180.25361 * 8 7 5 10 10 C 1.38102 * 120.29060 * 359.44399 * 9 8 7 11 11 C 1.39655 * 120.14643 * 0.55363 * 10 9 8 12 12 C 1.47868 * 120.07527 * 179.70681 * 11 10 9 13 13 N 1.34778 * 119.99569 * 0.02562 * 12 11 10 14 14 O 1.21550 * 120.00204 * 180.02562 * 12 11 10 15 15 C 1.39289 * 120.07069 * 179.97438 * 7 5 4 16 16 C 1.53044 * 109.44677 * 119.96797 * 2 1 3 17 17 C 1.53186 * 109.31748 * 58.64543 * 16 2 1 18 18 N 1.46928 * 108.77468 * 54.63341 * 17 16 2 19 19 C 1.36942 * 120.63131 * 126.41214 * 18 17 16 20 20 H 1.08000 * 119.99925 * 207.65806 * 19 18 17 21 21 C 1.38809 * 119.99571 * 27.66070 * 19 18 17 22 22 N 1.31617 * 120.00147 * 17.37742 * 21 19 18 23 23 Si 1.86807 * 119.99835 * 197.37543 * 21 19 18 24 24 H 1.48494 * 109.47069 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47030 * 120.00068 * 23 21 19 26 26 H 1.48502 * 109.47016 * 240.00071 * 23 21 19 27 27 C 1.46927 * 118.74195 * 306.39429 * 18 17 16 28 28 C 1.53043 * 109.45801 * 240.02493 * 2 1 3 29 29 H 1.08995 * 109.47079 * 60.00145 * 1 2 3 30 30 H 1.09004 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46933 * 300.00161 * 1 2 3 32 32 H 1.09002 * 109.46859 * 300.02801 * 3 2 1 33 33 H 1.09002 * 109.46866 * 180.02562 * 3 2 1 34 34 H 0.97002 * 119.99887 * 0.02562 * 4 3 2 35 35 H 1.08007 * 119.93165 * 359.97347 * 8 7 5 36 36 H 1.07994 * 119.85222 * 179.69762 * 9 8 7 37 37 H 1.08004 * 119.92235 * 180.28123 * 10 9 8 38 38 H 0.96996 * 120.00380 * 0.02562 * 13 12 11 39 39 H 0.97000 * 120.00076 * 180.02562 * 13 12 11 40 40 H 1.08005 * 120.14697 * 359.97438 * 15 7 5 41 41 H 1.09002 * 109.49098 * 178.60182 * 16 2 1 42 42 H 1.09005 * 109.49345 * 298.69189 * 16 2 1 43 43 H 1.09000 * 109.58787 * 294.85509 * 17 16 2 44 44 H 1.08999 * 109.59141 * 174.42203 * 17 16 2 45 45 H 0.97001 * 119.99798 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.58413 * 293.82342 * 27 18 17 47 47 H 1.08995 * 109.70676 * 173.46245 * 27 18 17 48 48 H 1.08995 * 109.49535 * 61.31341 * 28 2 1 49 49 H 1.08997 * 109.49588 * 181.40672 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5519 2.1329 1.1965 5 6 1.8778 3.4232 1.4100 6 8 2.5762 4.0141 0.6097 7 6 1.3848 4.1201 2.6173 8 6 0.5817 3.4425 3.5379 9 6 0.1163 4.0933 4.6630 10 6 0.4503 5.4136 4.8922 11 6 1.2524 6.1027 3.9800 12 6 1.6038 7.5182 4.2237 13 7 1.1501 8.1446 5.3275 14 8 2.3017 8.1168 3.4287 15 6 1.7212 5.4533 2.8398 16 6 2.0396 -0.7209 1.2502 17 6 1.4990 -2.1541 1.2644 18 7 1.8619 -2.8090 0.0002 19 6 2.5253 -4.0070 0.0004 20 1 3.1669 -4.2691 -0.8279 21 6 2.3730 -4.8845 1.0651 22 7 1.3597 -4.7447 1.8933 23 14 3.6062 -6.2638 1.3224 24 1 4.6443 -6.2038 0.2622 25 1 4.2485 -6.1118 2.6526 26 1 2.9064 -7.5720 1.2572 27 6 1.4993 -2.1543 -1.2641 28 6 2.0399 -0.7210 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6759 1.9564 -0.8898 33 1 3.1298 1.4427 -0.0005 34 1 0.9948 1.6612 1.8353 35 1 0.3204 2.4086 3.3668 36 1 -0.5084 3.5664 5.3690 37 1 0.0866 5.9156 5.7766 38 1 0.5934 7.6669 5.9621 39 1 1.3802 9.0733 5.4872 40 1 2.3429 5.9813 2.1318 41 1 3.1293 -0.7431 1.2385 42 1 1.6955 -0.1934 2.1399 43 1 0.4140 -2.1344 1.3673 44 1 1.9374 -2.7018 2.0987 45 1 1.2531 -5.3581 2.6371 46 1 0.4143 -2.1346 -1.3673 47 1 1.9359 -2.7013 -2.0997 48 1 1.6960 -0.1936 -2.1398 49 1 3.1295 -0.7432 -1.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278614856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:12 Heat of formation + Delta-G solvation = -32.860043 kcal Electronic energy + Delta-G solvation = -29981.281512 eV Core-core repulsion = 25908.321293 eV Total energy + Delta-G solvation = -4072.960220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.77701 -39.85912 -38.73405 -37.88990 -35.14476 -34.31542 -33.30155 -31.65605 -31.46684 -30.73001 -29.96046 -27.16837 -26.86460 -24.72509 -24.40230 -23.29641 -22.32033 -21.56468 -20.80208 -20.19870 -18.95411 -18.04833 -17.50551 -16.90308 -16.51629 -16.40350 -15.91734 -15.39303 -15.08330 -14.99992 -14.77971 -14.66749 -14.18209 -14.14066 -13.99059 -13.71422 -13.51074 -13.48879 -12.89210 -12.77688 -12.66607 -12.42510 -12.00647 -11.75231 -11.50522 -11.33276 -11.21675 -10.80549 -10.72693 -10.56905 -10.52928 -10.24280 -10.20282 -10.17668 -10.03016 -9.83197 -9.54945 -9.50979 -9.46340 -9.44190 -8.98788 -8.47307 -6.67909 -5.81597 -3.22576 0.22507 0.68601 2.23392 2.89474 2.92357 3.18258 3.35149 3.43658 3.45896 3.57037 4.23116 4.28946 4.38717 4.47976 4.65295 4.72473 4.95374 5.00013 5.13785 5.16409 5.20642 5.38530 5.47206 5.49206 5.73297 5.75335 5.80399 5.82737 5.85415 5.94230 6.04526 6.08023 6.11386 6.24235 6.28298 6.34127 6.40168 6.44708 6.51479 6.57837 6.66913 6.75344 6.83848 6.84395 6.97594 7.33014 7.45722 7.63207 7.78345 7.79727 8.13476 8.42912 9.19661 9.83275 10.39543 11.26873 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002132 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.221440 B =13132.630190 C =13825.595617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C 0.129 3.871 4 N -0.715 5.715 5 C 0.553 3.447 6 O -0.536 6.536 7 C -0.136 4.136 8 C -0.058 4.058 9 C -0.131 4.131 10 C -0.065 4.065 11 C -0.150 4.150 12 C 0.565 3.435 13 N -0.851 5.851 14 O -0.533 6.533 15 C -0.001 4.001 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.249 4.249 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.146 3.854 28 C -0.120 4.120 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.401 0.599 39 H 0.406 0.594 40 H 0.150 0.850 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.021 0.979 44 H 0.086 0.914 45 H 0.252 0.748 46 H 0.021 0.979 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 20.620 8.613 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C 0.006 3.994 4 N -0.367 5.367 5 C 0.340 3.660 6 O -0.414 6.414 7 C -0.139 4.139 8 C -0.077 4.077 9 C -0.149 4.149 10 C -0.084 4.084 11 C -0.153 4.153 12 C 0.351 3.649 13 N -0.416 5.416 14 O -0.410 6.410 15 C -0.021 4.021 16 C -0.169 4.169 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.019 3.981 28 C -0.160 4.160 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.237 0.763 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.230 0.770 39 H 0.237 0.763 40 H 0.168 0.832 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.289 21.124 7.522 23.039 hybrid contribution 0.066 -0.861 1.078 1.381 sum -5.223 20.263 8.600 22.624 Atomic orbital electron populations 1.21947 0.94705 1.03056 1.00229 1.20708 0.95759 0.91972 0.98034 1.21601 0.99207 0.92256 0.86354 1.46019 1.53201 1.11364 1.26119 1.18151 0.80536 0.81942 0.85392 1.90794 1.37843 1.66224 1.46530 1.20016 1.02074 0.95052 0.96769 1.21636 0.93406 0.99916 0.92759 1.21086 1.01165 0.94587 0.98058 1.21464 0.94688 0.94703 0.97529 1.19817 1.03505 0.94204 0.97788 1.18215 0.79138 0.86462 0.81119 1.43730 1.55824 1.16870 1.25169 1.90859 1.37411 1.67181 1.45570 1.21399 0.93601 0.92416 0.94678 1.22261 1.00769 0.99570 0.94319 1.20795 0.96481 0.87776 0.90423 1.44037 1.66818 1.21076 0.99461 1.19234 1.19142 0.93421 1.06068 0.91690 1.25012 0.97176 0.97559 1.00002 1.70035 1.27963 1.38812 1.18010 0.86254 0.81097 0.81848 0.77778 1.20276 1.21612 1.21784 1.20912 0.96407 0.90613 0.90128 1.21999 1.00830 0.98158 0.95001 0.93307 0.90635 0.93844 0.91647 0.91427 0.76266 0.84768 0.84350 0.85156 0.76985 0.76278 0.83194 0.92448 0.93832 0.96104 0.89608 0.93770 0.96149 0.92885 0.92869 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.54 37.16 0.28 -1.71 16 2 C -0.06 -0.96 0.53 -154.46 -0.08 -1.04 16 3 C 0.13 1.80 4.56 -4.04 -0.02 1.78 16 4 N -0.71 -8.94 4.90 -61.24 -0.30 -9.24 16 5 C 0.55 7.68 7.77 -12.32 -0.10 7.59 16 6 O -0.54 -9.42 16.34 5.32 0.09 -9.34 16 7 C -0.14 -1.53 5.87 -105.02 -0.62 -2.14 16 8 C -0.06 -0.48 9.54 -39.10 -0.37 -0.85 16 9 C -0.13 -0.81 10.02 -39.70 -0.40 -1.21 16 10 C -0.06 -0.39 9.54 -39.10 -0.37 -0.76 16 11 C -0.15 -1.37 5.87 -105.02 -0.62 -1.99 16 12 C 0.56 5.44 8.05 -12.32 -0.10 5.34 16 13 N -0.85 -4.07 8.82 30.53 0.27 -3.80 16 14 O -0.53 -7.55 17.18 5.32 0.09 -7.46 16 15 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 16 C -0.13 -2.24 4.75 -26.61 -0.13 -2.36 16 17 C 0.17 3.77 4.84 -3.71 -0.02 3.75 16 18 N -0.59 -14.05 3.00 -172.32 -0.52 -14.57 16 19 C -0.25 -6.64 9.59 -15.06 -0.14 -6.79 16 20 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 22 N -0.90 -25.38 11.19 55.49 0.62 -24.76 16 23 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 C 0.15 2.89 6.04 -3.71 -0.02 2.86 16 28 C -0.12 -1.96 4.91 -26.61 -0.13 -2.09 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.24 4.98 -51.93 -0.26 0.98 16 31 H 0.04 0.52 6.86 -51.93 -0.36 0.17 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.40 4.24 4.18 -40.82 -0.17 4.07 16 35 H 0.13 0.89 6.39 -52.48 -0.34 0.55 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.29 6.39 -52.48 -0.34 -0.05 16 38 H 0.40 0.65 6.85 -40.82 -0.28 0.37 16 39 H 0.41 1.48 8.93 -40.82 -0.36 1.12 16 40 H 0.15 2.04 7.23 -52.48 -0.38 1.67 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.64 6.82 -51.93 -0.35 0.29 16 43 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 44 H 0.09 2.18 6.04 -51.93 -0.31 1.86 16 45 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 47 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -34.53 384.88 -9.01 -43.54 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.76 Total: 3.55 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -3.27 Total: -0.04 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.07 Total: -52.37 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.18 Total: -16.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.53 -9.01 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278614856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.680 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds