Wall clock time and date at job start Wed Apr 1 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46172 * 2 1 4 4 N 1.46498 * 109.47160 * 60.02551 * 3 2 1 5 5 C 1.34780 * 119.99787 * 179.97438 * 4 3 2 6 6 O 1.21551 * 119.99982 * 0.02562 * 5 4 3 7 7 C 1.47863 * 119.99731 * 179.97438 * 5 4 3 8 8 C 1.39700 * 120.07378 * 0.02562 * 7 5 4 9 9 C 1.38058 * 120.14531 * 180.25361 * 8 7 5 10 10 C 1.38102 * 120.29060 * 359.44399 * 9 8 7 11 11 C 1.39655 * 120.14643 * 0.55363 * 10 9 8 12 12 C 1.47868 * 120.07527 * 179.70681 * 11 10 9 13 13 N 1.34778 * 119.99569 * 0.02562 * 12 11 10 14 14 O 1.21550 * 120.00204 * 180.02562 * 12 11 10 15 15 C 1.39289 * 120.07069 * 179.97438 * 7 5 4 16 16 C 1.53044 * 109.44677 * 119.96797 * 2 1 3 17 17 C 1.53186 * 109.31748 * 58.64543 * 16 2 1 18 18 N 1.46928 * 108.77468 * 54.63341 * 17 16 2 19 19 C 1.36942 * 120.63131 * 126.41214 * 18 17 16 20 20 H 1.08000 * 119.99925 * 207.65806 * 19 18 17 21 21 C 1.38809 * 119.99571 * 27.66070 * 19 18 17 22 22 N 1.31617 * 120.00147 * 17.37742 * 21 19 18 23 23 Si 1.86807 * 119.99835 * 197.37543 * 21 19 18 24 24 H 1.48494 * 109.47069 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47030 * 120.00068 * 23 21 19 26 26 H 1.48502 * 109.47016 * 240.00071 * 23 21 19 27 27 C 1.46927 * 118.74195 * 306.39429 * 18 17 16 28 28 C 1.53043 * 109.45801 * 240.02493 * 2 1 3 29 29 H 1.08995 * 109.47079 * 60.00145 * 1 2 3 30 30 H 1.09004 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46933 * 300.00161 * 1 2 3 32 32 H 1.09002 * 109.46859 * 300.02801 * 3 2 1 33 33 H 1.09002 * 109.46866 * 180.02562 * 3 2 1 34 34 H 0.97002 * 119.99887 * 0.02562 * 4 3 2 35 35 H 1.08007 * 119.93165 * 359.97347 * 8 7 5 36 36 H 1.07994 * 119.85222 * 179.69762 * 9 8 7 37 37 H 1.08004 * 119.92235 * 180.28123 * 10 9 8 38 38 H 0.96996 * 120.00380 * 0.02562 * 13 12 11 39 39 H 0.97000 * 120.00076 * 180.02562 * 13 12 11 40 40 H 1.08005 * 120.14697 * 359.97438 * 15 7 5 41 41 H 1.09002 * 109.49098 * 178.60182 * 16 2 1 42 42 H 1.09005 * 109.49345 * 298.69189 * 16 2 1 43 43 H 1.09000 * 109.58787 * 294.85509 * 17 16 2 44 44 H 1.08999 * 109.59141 * 174.42203 * 17 16 2 45 45 H 0.97001 * 119.99798 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.58413 * 293.82342 * 27 18 17 47 47 H 1.08995 * 109.70676 * 173.46245 * 27 18 17 48 48 H 1.08995 * 109.49535 * 61.31341 * 28 2 1 49 49 H 1.08997 * 109.49588 * 181.40672 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5519 2.1329 1.1965 5 6 1.8778 3.4232 1.4100 6 8 2.5762 4.0141 0.6097 7 6 1.3848 4.1201 2.6173 8 6 0.5817 3.4425 3.5379 9 6 0.1163 4.0933 4.6630 10 6 0.4503 5.4136 4.8922 11 6 1.2524 6.1027 3.9800 12 6 1.6038 7.5182 4.2237 13 7 1.1501 8.1446 5.3275 14 8 2.3017 8.1168 3.4287 15 6 1.7212 5.4533 2.8398 16 6 2.0396 -0.7209 1.2502 17 6 1.4990 -2.1541 1.2644 18 7 1.8619 -2.8090 0.0002 19 6 2.5253 -4.0070 0.0004 20 1 3.1669 -4.2691 -0.8279 21 6 2.3730 -4.8845 1.0651 22 7 1.3597 -4.7447 1.8933 23 14 3.6062 -6.2638 1.3224 24 1 4.6443 -6.2038 0.2622 25 1 4.2485 -6.1118 2.6526 26 1 2.9064 -7.5720 1.2572 27 6 1.4993 -2.1543 -1.2641 28 6 2.0399 -0.7210 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6759 1.9564 -0.8898 33 1 3.1298 1.4427 -0.0005 34 1 0.9948 1.6612 1.8353 35 1 0.3204 2.4086 3.3668 36 1 -0.5084 3.5664 5.3690 37 1 0.0866 5.9156 5.7766 38 1 0.5934 7.6669 5.9621 39 1 1.3802 9.0733 5.4872 40 1 2.3429 5.9813 2.1318 41 1 3.1293 -0.7431 1.2385 42 1 1.6955 -0.1934 2.1399 43 1 0.4140 -2.1344 1.3673 44 1 1.9374 -2.7018 2.0987 45 1 1.2531 -5.3581 2.6371 46 1 0.4143 -2.1346 -1.3673 47 1 1.9359 -2.7013 -2.0997 48 1 1.6960 -0.1936 -2.1398 49 1 3.1295 -0.7432 -1.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278614856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:11 Heat of formation + Delta-G solvation = -58.011129 kcal Electronic energy + Delta-G solvation = -29982.372145 eV Core-core repulsion = 25908.321293 eV Total energy + Delta-G solvation = -4074.050853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.62937 -40.84011 -39.95287 -38.78142 -36.64274 -35.01878 -34.73628 -32.91272 -32.12587 -31.95774 -31.56189 -28.70724 -28.01377 -26.00685 -25.34634 -24.42610 -23.79605 -22.42038 -22.23093 -21.12572 -19.79356 -19.51161 -18.36766 -18.02153 -17.68355 -17.18527 -16.88785 -16.76459 -16.48872 -15.92792 -15.84533 -15.55776 -15.46700 -15.36787 -15.02211 -14.99827 -14.80707 -14.72082 -14.42696 -14.04277 -13.66275 -13.34390 -13.14301 -13.00311 -12.95706 -12.66976 -12.56952 -12.46642 -12.31799 -12.22127 -11.87855 -11.78822 -11.46105 -11.34891 -11.21966 -11.04612 -10.97946 -10.78954 -10.47796 -10.30831 -10.10786 -9.97788 -8.61031 -7.85055 -5.27766 -0.42217 -0.03928 1.45267 1.48386 1.51108 1.57743 2.01830 2.04392 2.48352 2.52534 2.83253 3.28655 3.56255 3.71250 3.73785 3.79506 3.82990 3.87271 3.95220 4.04540 4.08063 4.34460 4.42020 4.52631 4.54746 4.62948 4.73122 4.77607 4.85100 4.86979 4.87850 4.97497 5.09330 5.13006 5.14373 5.18083 5.24270 5.27250 5.32721 5.38174 5.42062 5.51752 5.58142 5.68887 5.69870 5.83915 5.88104 6.37745 6.42858 6.45551 7.11024 7.19663 7.24519 7.92200 8.41994 9.20657 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002132 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.221440 B =13132.630190 C =13825.595617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.139 3.861 4 N -0.704 5.704 5 C 0.552 3.448 6 O -0.584 6.584 7 C -0.156 4.156 8 C -0.055 4.055 9 C -0.121 4.121 10 C -0.043 4.043 11 C -0.160 4.160 12 C 0.560 3.440 13 N -0.823 5.823 14 O -0.592 6.592 15 C -0.026 4.026 16 C -0.117 4.117 17 C 0.179 3.821 18 N -0.610 5.610 19 C -0.259 4.259 20 H 0.060 0.940 21 C -0.049 4.049 22 N -0.930 5.930 23 Si 0.960 3.040 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.143 3.857 28 C -0.113 4.113 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.412 0.588 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.420 0.580 39 H 0.414 0.586 40 H 0.113 0.887 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.011 0.989 44 H 0.048 0.952 45 H 0.249 0.751 46 H 0.024 0.976 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 21.523 10.873 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C 0.015 3.985 4 N -0.357 5.357 5 C 0.340 3.660 6 O -0.465 6.465 7 C -0.159 4.159 8 C -0.073 4.073 9 C -0.138 4.138 10 C -0.061 4.061 11 C -0.163 4.163 12 C 0.346 3.654 13 N -0.388 5.388 14 O -0.474 6.474 15 C -0.046 4.046 16 C -0.156 4.156 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.390 4.390 20 H 0.078 0.922 21 C -0.244 4.244 22 N -0.576 5.576 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.217 1.217 26 H -0.220 1.220 27 C 0.018 3.982 28 C -0.153 4.153 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.251 0.749 35 H 0.171 0.829 36 H 0.197 0.803 37 H 0.195 0.805 38 H 0.253 0.747 39 H 0.247 0.753 40 H 0.131 0.869 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.029 0.971 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.192 22.031 9.831 25.174 hybrid contribution 0.572 -1.120 0.426 1.328 sum -6.620 20.911 10.256 24.213 Atomic orbital electron populations 1.21884 0.93310 1.01954 1.02283 1.20565 0.96683 0.92021 0.96113 1.21363 0.98389 0.91416 0.87291 1.45869 1.52965 1.11007 1.25820 1.18616 0.79640 0.81962 0.85752 1.90765 1.40102 1.67270 1.48406 1.19794 1.04308 0.94914 0.96877 1.21905 0.92176 1.00700 0.92555 1.21579 1.00249 0.94517 0.97476 1.21961 0.91997 0.94635 0.97508 1.19852 1.04489 0.94150 0.97849 1.18425 0.78657 0.86743 0.81539 1.43506 1.54435 1.17194 1.23691 1.90834 1.40313 1.68388 1.47862 1.21222 0.94731 0.93033 0.95651 1.22069 0.99579 0.97075 0.96921 1.20613 0.95646 0.89792 0.88621 1.44298 1.66944 1.20800 1.01298 1.19493 1.19078 0.94501 1.05882 0.92210 1.25670 0.98748 0.99863 1.00152 1.70159 1.29331 1.39701 1.18426 0.85322 0.79163 0.79152 0.77499 1.19635 1.21690 1.21950 1.21035 0.96663 0.92260 0.88277 1.21894 1.00115 0.96229 0.97028 0.91676 0.93163 0.91527 0.91176 0.92831 0.74918 0.82911 0.80345 0.80484 0.74705 0.75331 0.86929 0.94062 0.90997 0.97057 0.93340 0.94154 0.95779 0.93514 0.90062 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 7.54 71.98 0.54 -2.96 16 2 C -0.05 -1.51 0.53 -52.15 -0.03 -1.54 16 3 C 0.14 3.72 4.56 86.38 0.39 4.11 16 4 N -0.70 -16.58 4.90 -465.95 -2.28 -18.87 16 5 C 0.55 15.37 7.77 86.79 0.67 16.04 16 6 O -0.58 -21.52 16.34 -3.88 -0.06 -21.58 16 7 C -0.16 -3.41 5.87 -20.12 -0.12 -3.52 16 8 C -0.05 -0.72 9.54 22.58 0.22 -0.50 16 9 C -0.12 -0.88 10.02 22.19 0.22 -0.66 16 10 C -0.04 -0.32 9.54 22.58 0.22 -0.10 16 11 C -0.16 -2.72 5.87 -20.12 -0.12 -2.84 16 12 C 0.56 10.43 8.05 86.79 0.70 11.13 16 13 N -0.82 -5.72 8.82 -175.59 -1.55 -7.27 16 14 O -0.59 -17.67 17.18 -3.87 -0.07 -17.73 16 15 C -0.03 -0.63 9.14 22.79 0.21 -0.43 16 16 C -0.12 -3.95 4.75 30.67 0.15 -3.80 16 17 C 0.18 7.96 4.84 86.36 0.42 8.37 16 18 N -0.61 -29.38 3.00 -699.10 -2.09 -31.48 16 19 C -0.26 -14.06 9.59 84.03 0.81 -13.26 16 20 H 0.06 3.23 7.89 -2.91 -0.02 3.21 16 21 C -0.05 -2.68 4.91 84.86 0.42 -2.27 16 22 N -0.93 -53.26 11.19 21.65 0.24 -53.02 16 23 Si 0.96 44.53 29.59 68.60 2.03 46.56 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 C 0.14 5.64 6.04 86.36 0.52 6.16 16 28 C -0.11 -3.57 4.91 30.67 0.15 -3.42 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.57 4.98 -2.38 -0.01 1.56 16 31 H 0.07 1.38 6.86 -2.39 -0.02 1.36 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.41 7.59 4.18 -92.71 -0.39 7.20 16 35 H 0.15 1.37 6.39 -2.91 -0.02 1.35 16 36 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 37 H 0.18 -0.40 6.39 -2.91 -0.02 -0.42 16 38 H 0.42 -0.49 6.85 -92.71 -0.64 -1.12 16 39 H 0.41 2.11 8.93 -92.71 -0.83 1.28 16 40 H 0.11 3.50 7.23 -2.91 -0.02 3.48 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.99 6.82 -2.38 -0.02 1.97 16 43 H 0.01 0.52 6.69 -2.39 -0.02 0.51 16 44 H 0.05 2.52 6.04 -2.39 -0.01 2.50 16 45 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 46 H 0.02 0.94 6.69 -2.39 -0.02 0.93 16 47 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -81.75 384.88 0.75 -81.00 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -0.83 Total: 11.88 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.37 Total: 10.51 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -5.68 Total: -110.64 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.13 Total: -39.32 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -81.75 0.75 -81.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278614856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.992 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds