Wall clock time and date at job start Wed Apr 1 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38091 * 119.58498 * 2 1 4 4 C 1.38784 * 119.28677 * 179.70555 * 3 2 1 5 5 C 1.50710 * 120.75734 * 180.29973 * 4 3 2 6 6 C 1.38412 * 118.48632 * 0.54320 * 4 3 2 7 7 C 1.50700 * 120.44530 * 179.73683 * 6 4 3 8 8 C 1.50700 * 109.47086 * 269.72490 * 7 6 4 9 9 O 1.21289 * 120.00029 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00324 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00102 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47021 * 179.97438 * 11 10 8 13 13 C 1.29454 * 117.69519 * 94.99989 * 12 11 10 14 14 C 1.50322 * 123.65500 * 180.86104 * 13 12 11 15 15 N 1.47012 * 109.16271 * 349.01804 * 14 13 12 16 16 C 1.36934 * 121.37462 * 222.96812 * 15 14 13 17 17 H 1.08005 * 120.00007 * 155.96961 * 16 15 14 18 18 C 1.38818 * 120.00320 * 335.97331 * 16 15 14 19 19 N 1.31616 * 119.99424 * 344.52132 * 18 16 15 20 20 Si 1.86793 * 120.00033 * 164.52092 * 18 16 15 21 21 H 1.48499 * 109.47295 * 59.99993 * 20 18 16 22 22 H 1.48498 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47357 * 299.99725 * 20 18 16 24 24 C 1.47333 * 117.24883 * 42.94994 * 15 14 13 25 25 C 1.49972 * 117.69466 * 274.74033 * 12 11 10 26 26 C 1.38875 * 119.11383 * 359.45924 * 6 4 3 27 27 O 1.35682 * 119.68628 * 180.25310 * 26 6 4 28 28 N 1.31933 * 119.58412 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46719 * 270.01436 * 1 2 3 30 30 H 1.09000 * 109.47497 * 30.01322 * 1 2 3 31 31 H 1.08998 * 109.47357 * 150.02049 * 1 2 3 32 32 H 1.07997 * 120.35417 * 359.97438 * 3 2 1 33 33 H 1.08993 * 109.46780 * 270.25127 * 5 4 3 34 34 H 1.09005 * 109.46486 * 30.24617 * 5 4 3 35 35 H 1.09002 * 109.47084 * 150.24618 * 5 4 3 36 36 H 1.08996 * 109.47746 * 149.72039 * 7 6 4 37 37 H 1.09001 * 109.46956 * 29.71764 * 7 6 4 38 38 H 0.96997 * 120.00055 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47132 * 59.99990 * 11 10 8 40 40 H 1.09001 * 109.46799 * 299.99571 * 11 10 8 41 41 H 1.07997 * 118.17426 * 0.87895 * 13 12 11 42 42 H 1.08999 * 109.52720 * 108.92650 * 14 13 12 43 43 H 1.08998 * 109.52220 * 229.11921 * 14 13 12 44 44 H 0.97005 * 119.99607 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.77712 * 57.81016 * 24 15 14 46 46 H 1.08993 * 109.77988 * 178.61344 * 24 15 14 47 47 H 1.09000 * 109.31400 * 281.28746 * 25 12 11 48 48 H 1.08991 * 109.31850 * 40.71826 * 25 12 11 49 49 H 0.96700 * 114.00035 * 89.99559 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1937 0.0062 5 6 4.3540 2.4847 0.0132 6 6 4.2304 -0.0263 0.0007 7 6 5.7362 -0.0856 0.0011 8 6 6.2386 -0.1054 -1.4195 9 8 5.4512 -0.0749 -2.3417 10 7 7.5627 -0.1570 -1.6655 11 6 8.0510 -0.1768 -3.0467 12 6 9.5568 -0.2348 -3.0463 13 6 10.1142 -1.3990 -3.1452 14 6 11.6020 -1.6135 -3.1395 15 7 12.2774 -0.3145 -3.2726 16 6 13.3566 -0.1535 -4.0999 17 1 13.5979 0.8249 -4.4886 18 6 14.1405 -1.2478 -4.4392 19 7 14.0479 -2.3634 -3.7470 20 14 15.3267 -1.1368 -5.8779 21 1 16.3115 -0.0545 -5.6252 22 1 16.0411 -2.4296 -6.0312 23 1 14.5708 -0.8380 -7.1207 24 6 11.7448 0.8071 -2.4794 25 6 10.3042 1.0609 -2.9374 26 6 3.4802 -1.1950 0.0007 27 8 4.1092 -2.3972 0.0005 28 7 2.1583 -1.1473 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5140 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6478 2.1356 -0.0004 33 1 4.5421 2.8010 -1.0127 34 1 3.7784 3.2525 0.5304 35 1 5.3034 2.3344 0.5271 36 1 6.0642 -0.9891 0.5151 37 1 6.1341 0.7895 0.5149 38 1 8.1924 -0.1811 -0.9281 39 1 7.7226 0.7262 -3.5611 40 1 7.6535 -1.0524 -3.5600 41 1 9.4746 -2.2643 -3.2371 42 1 11.8987 -2.0840 -2.2022 43 1 11.8805 -2.2560 -3.9748 44 1 14.5955 -3.1282 -3.9843 45 1 11.7592 0.5494 -1.4203 46 1 12.3474 1.6990 -2.6508 47 1 10.3127 1.5550 -3.9089 48 1 9.8057 1.7049 -2.2130 49 1 4.2917 -2.7458 0.8838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279621538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:28 Heat of formation + Delta-G solvation = -37.421855 kcal Electronic energy + Delta-G solvation = -29575.507247 eV Core-core repulsion = 25502.349212 eV Total energy + Delta-G solvation = -4073.158035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.89911 -40.57850 -39.30441 -38.28791 -36.45817 -35.73363 -34.52945 -32.97442 -32.62489 -31.49567 -31.15489 -28.81401 -28.47827 -26.93462 -25.57245 -24.37549 -23.74009 -22.83606 -22.09817 -21.29642 -19.50600 -19.37482 -18.45267 -18.26242 -17.44037 -17.25437 -16.95246 -16.54974 -16.27376 -16.03808 -15.72111 -15.38730 -15.22382 -15.10121 -14.73022 -14.52755 -14.39748 -14.17465 -13.92005 -13.87674 -13.82140 -13.57713 -13.27231 -13.21269 -12.97265 -12.84207 -12.76847 -12.75063 -12.58580 -12.46460 -12.41051 -12.25735 -12.10421 -11.70631 -11.28578 -11.08693 -10.67867 -10.43643 -10.36834 -10.09048 -9.70277 -9.56764 -8.74675 -7.88429 -5.29366 -0.00782 0.21872 1.19182 1.46786 1.49593 1.55724 1.66097 2.36705 2.51195 2.60814 2.77204 3.28758 3.45080 3.62776 3.69808 3.81626 3.86379 3.90462 3.97186 4.06522 4.24039 4.38427 4.43870 4.48820 4.54563 4.58293 4.64096 4.68480 4.74171 4.76175 4.79060 4.84866 4.86028 4.92811 5.02043 5.11134 5.12442 5.22151 5.24227 5.34678 5.37455 5.43488 5.48438 5.61418 5.68454 5.77353 6.16251 6.33978 6.58045 6.63326 6.98687 7.13558 7.27267 7.84069 8.37499 9.19910 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.001879 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.423933 B =14897.692459 C =15356.569775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.134 3.866 3 C -0.186 4.186 4 C -0.020 4.020 5 C -0.119 4.119 6 C -0.152 4.152 7 C -0.087 4.087 8 C 0.516 3.484 9 O -0.586 6.586 10 N -0.711 5.711 11 C 0.169 3.831 12 C -0.136 4.136 13 C -0.144 4.144 14 C 0.205 3.795 15 N -0.615 5.615 16 C -0.257 4.257 17 H 0.071 0.929 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.967 3.033 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.282 1.282 24 C 0.139 3.861 25 C -0.083 4.083 26 C 0.310 3.690 27 O -0.494 6.494 28 N -0.544 5.544 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.167 0.833 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.415 0.585 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.016 0.984 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.031 0.969 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.092 0.908 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.074 9.909 14.506 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.003 4.003 3 C -0.206 4.206 4 C -0.028 4.028 5 C -0.175 4.175 6 C -0.156 4.156 7 C -0.127 4.127 8 C 0.304 3.696 9 O -0.465 6.465 10 N -0.363 5.363 11 C 0.045 3.955 12 C -0.137 4.137 13 C -0.164 4.164 14 C 0.080 3.920 15 N -0.339 5.339 16 C -0.387 4.387 17 H 0.088 0.912 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.208 1.208 24 C 0.013 3.987 25 C -0.122 4.122 26 C 0.132 3.868 27 O -0.304 6.304 28 N -0.265 5.265 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.251 0.749 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -24.953 9.048 13.224 29.655 hybrid contribution 1.739 -0.320 -0.311 1.796 sum -23.214 8.727 12.913 27.960 Atomic orbital electron populations 1.20824 0.86511 1.04200 1.04295 1.21584 0.98257 0.87177 0.93305 1.22154 0.94027 1.00126 1.04257 1.20487 0.94398 0.95543 0.92330 1.20976 1.00659 0.92574 1.03289 1.20304 0.96261 0.92918 1.06088 1.20541 0.90914 1.07961 0.93290 1.20995 0.81807 0.74876 0.91947 1.90707 1.56460 1.51363 1.48020 1.45990 1.06891 1.74574 1.08847 1.20164 0.90335 1.01401 0.83593 1.20605 0.93512 0.95417 1.04170 1.22937 0.97564 0.97658 0.98270 1.19393 0.86359 0.87713 0.98526 1.44396 1.32860 1.06957 1.49708 1.19481 1.03536 0.95106 1.20593 0.91164 1.25733 1.00123 0.97157 1.01937 1.70156 1.43606 1.04210 1.40587 0.85341 0.78790 0.76550 0.79787 1.19952 1.22126 1.20802 1.21195 0.93269 0.90689 0.93513 1.20728 0.95615 0.94183 1.01627 1.19147 0.86939 0.85442 0.95278 1.84805 1.76493 1.33633 1.35428 1.66975 1.10115 1.32293 1.17085 0.88658 0.88294 0.91486 0.81514 0.90961 0.88435 0.89312 0.85703 0.84283 0.74872 0.91468 0.93002 0.87433 0.96640 0.92704 0.94152 0.95066 0.92202 0.91998 0.88962 0.72400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.17 71.23 0.72 -0.51 16 2 C 0.13 2.62 6.78 42.51 0.29 2.91 16 3 C -0.19 -3.00 9.44 22.37 0.21 -2.79 16 4 C -0.02 -0.35 5.91 -19.69 -0.12 -0.46 16 5 C -0.12 -1.31 9.67 71.24 0.69 -0.62 16 6 C -0.15 -3.11 4.40 -19.67 -0.09 -3.20 16 7 C -0.09 -1.38 5.26 29.10 0.15 -1.23 16 8 C 0.52 12.60 7.82 87.66 0.69 13.29 16 9 O -0.59 -20.29 16.03 -3.06 -0.05 -20.34 16 10 N -0.71 -15.88 5.55 -466.78 -2.59 -18.47 16 11 C 0.17 4.70 5.66 85.63 0.48 5.19 16 12 C -0.14 -4.31 5.22 -15.14 -0.08 -4.39 16 13 C -0.14 -5.35 9.47 27.11 0.26 -5.09 16 14 C 0.21 9.81 5.23 85.42 0.45 10.26 16 15 N -0.62 -30.25 3.01 -703.02 -2.11 -32.37 16 16 C -0.26 -14.00 9.71 84.04 0.82 -13.18 16 17 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 18 C -0.05 -3.04 5.01 84.86 0.43 -2.61 16 19 N -0.94 -55.15 11.08 21.65 0.24 -54.91 16 20 Si 0.97 44.90 29.58 68.60 2.03 46.93 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C 0.14 5.30 6.59 86.32 0.57 5.87 16 25 C -0.08 -2.55 5.95 29.72 0.18 -2.37 16 26 C 0.31 7.61 7.72 84.78 0.65 8.26 16 27 O -0.49 -11.10 12.62 -90.00 -1.14 -12.24 16 28 N -0.54 -13.94 10.30 -296.97 -3.06 -17.00 16 29 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.10 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.10 0.62 8.10 -2.38 -0.02 0.60 16 35 H 0.09 0.70 6.08 -2.39 -0.01 0.68 16 36 H 0.12 1.47 7.55 -2.39 -0.02 1.45 16 37 H 0.14 1.22 6.06 -2.39 -0.01 1.21 16 38 H 0.41 7.19 8.46 -92.71 -0.78 6.40 16 39 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 40 H 0.05 1.62 7.78 -2.39 -0.02 1.60 16 41 H 0.11 3.68 7.73 -2.91 -0.02 3.65 16 42 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 3.01 6.41 -2.39 -0.02 2.99 16 44 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 45 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 48 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.42 4.52 9.06 -74.06 -0.67 3.85 16 Total: -1.00 -80.22 402.13 -0.85 -81.07 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.47 Total: 17.99 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.30 Total: 9.33 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -7.52 Total: -122.74 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.19 Total: -32.58 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -80.22 -0.85 -81.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279621538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.648 kcal (2) G-P(sol) polarization free energy of solvation -80.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds