Wall clock time and date at job start Wed Apr 1 2020 03:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38677 * 120.78677 * 2 1 4 4 C 1.38183 * 119.16264 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.76585 * 359.97438 * 4 3 2 6 6 C 1.31858 * 121.72587 * 359.78330 * 5 4 3 7 7 C 1.38230 * 120.76324 * 0.47840 * 6 5 4 8 8 C 1.50699 * 120.42065 * 179.77891 * 7 6 5 9 9 H 1.08993 * 109.47009 * 144.72498 * 8 7 6 10 10 C 1.52995 * 109.47017 * 264.72423 * 8 7 6 11 11 N 1.46497 * 109.46833 * 24.72583 * 8 7 6 12 12 C 1.34779 * 119.99702 * 155.00376 * 11 8 7 13 13 O 1.21347 * 120.00075 * 359.97438 * 12 11 8 14 14 C 1.49457 * 119.99650 * 179.97438 * 12 11 8 15 15 O 1.21342 * 120.00380 * 353.23722 * 14 12 11 16 16 N 1.34782 * 119.99484 * 173.23167 * 14 12 11 17 17 C 1.46923 * 120.62684 * 171.44241 * 16 14 12 18 18 C 1.53197 * 108.89116 * 126.46037 * 17 16 14 19 19 C 1.53040 * 109.31091 * 54.56637 * 18 17 16 20 20 C 1.50700 * 109.46331 * 178.62515 * 19 18 17 21 21 H 1.08000 * 119.99425 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00362 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99766 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00163 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47487 * 120.00357 * 24 22 20 27 27 H 1.48500 * 109.47368 * 240.00305 * 24 22 20 28 28 C 1.53045 * 109.53845 * 298.63723 * 19 18 17 29 29 C 1.46960 * 120.65505 * 351.26403 * 16 14 12 30 30 H 1.09000 * 109.47143 * 269.97239 * 1 2 3 31 31 H 1.08998 * 109.47693 * 29.97485 * 1 2 3 32 32 H 1.09000 * 109.46946 * 149.98030 * 1 2 3 33 33 H 1.08004 * 120.41776 * 0.02562 * 3 2 1 34 34 H 1.07996 * 119.61672 * 180.02562 * 4 3 2 35 35 H 1.07998 * 119.62188 * 180.23803 * 6 5 4 36 36 H 1.08999 * 109.46985 * 179.97438 * 10 8 7 37 37 H 1.09005 * 109.47578 * 299.99907 * 10 8 7 38 38 H 1.09008 * 109.47445 * 59.99911 * 10 8 7 39 39 H 0.96995 * 120.00268 * 334.99273 * 11 8 7 40 40 H 1.09007 * 109.59032 * 6.60837 * 17 16 14 41 41 H 1.08996 * 109.59077 * 246.31988 * 17 16 14 42 42 H 1.08998 * 109.49713 * 174.51284 * 18 17 16 43 43 H 1.08994 * 109.49757 * 294.58305 * 18 17 16 44 44 H 1.09008 * 109.46079 * 58.65092 * 19 18 17 45 45 H 0.96996 * 119.99667 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.49836 * 181.31973 * 28 19 18 47 47 H 1.09004 * 109.49264 * 301.40758 * 28 19 18 48 48 H 1.08999 * 109.46492 * 113.75401 * 29 16 14 49 49 H 1.09003 * 109.71205 * 353.46093 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1522 -0.0005 5 7 4.2403 0.0003 -0.0005 6 6 3.5984 -1.1515 0.0042 7 6 2.2166 -1.1909 -0.0005 8 6 1.4909 -2.5116 -0.0001 9 1 0.5786 -2.4246 0.5900 10 6 1.1341 -2.8979 -1.4368 11 7 2.3533 -3.5424 0.5830 12 6 1.8070 -4.6364 1.1499 13 8 0.6010 -4.7673 1.1777 14 6 2.6868 -5.6882 1.7442 15 8 3.8908 -5.6196 1.6093 16 7 2.1429 -6.7130 2.4302 17 6 2.9697 -7.8493 2.8590 18 6 2.7905 -8.0520 4.3669 19 6 1.3010 -8.2038 4.6836 20 6 1.1232 -8.4372 6.1618 21 1 1.9861 -8.4731 6.8104 22 6 -0.1409 -8.6037 6.6864 23 7 -1.1917 -8.5594 5.8966 24 14 -0.3613 -8.8922 8.5187 25 1 0.9673 -8.8976 9.1822 26 1 -1.1968 -7.8075 9.0937 27 1 -1.0295 -10.2002 8.7371 28 6 0.5585 -6.9292 4.2760 29 6 0.7124 -6.7137 2.7671 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6965 2.1378 0.0004 34 1 4.1581 2.0755 -0.0001 35 1 4.1586 -2.0748 0.0079 36 1 0.6096 -3.8534 -1.4365 37 1 0.4924 -2.1309 -1.8707 38 1 2.0464 -2.9848 -2.0270 39 1 3.3173 -3.4376 0.5610 40 1 4.0173 -7.6422 2.6402 41 1 2.6569 -8.7492 2.3296 42 1 3.3222 -8.9509 4.6788 43 1 3.1902 -7.1894 4.8999 44 1 0.8968 -9.0520 4.1309 45 1 -2.0810 -8.6762 6.2657 46 1 -0.4983 -7.0289 4.5233 47 1 0.9787 -6.0769 4.8100 48 1 0.2132 -7.5201 2.2300 49 1 0.2683 -5.7584 2.4873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346685824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:50 Heat of formation + Delta-G solvation = -26.445022 kcal Electronic energy + Delta-G solvation = -30444.877692 eV Core-core repulsion = 26372.195648 eV Total energy + Delta-G solvation = -4072.682044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.18666 -40.43546 -38.62249 -37.03830 -36.27698 -34.32794 -33.48187 -31.79761 -31.23373 -30.09646 -29.95199 -28.28433 -26.68774 -25.14444 -24.32547 -22.98912 -22.47527 -22.06747 -21.11674 -20.25809 -19.01561 -17.56936 -17.38235 -16.72699 -16.50825 -16.24351 -15.89051 -15.66600 -15.23668 -14.87404 -14.84668 -14.53544 -14.08657 -13.94049 -13.84393 -13.30442 -13.22578 -13.10656 -13.04318 -12.90893 -12.85620 -12.66597 -12.61290 -12.32494 -11.96819 -11.70618 -11.51991 -11.38795 -10.98747 -10.90575 -10.59614 -10.37725 -10.08805 -9.85607 -9.77673 -9.72310 -9.59020 -9.27636 -9.23847 -9.18214 -8.63487 -8.36140 -8.09292 -6.01551 -4.07854 0.69401 0.85714 1.57072 2.42091 3.27869 3.35532 3.36539 3.40004 3.40354 3.67388 3.93952 4.23216 4.31063 4.41821 4.42393 4.49077 4.62659 4.88473 4.91659 5.02353 5.07682 5.15996 5.28075 5.29670 5.37400 5.46336 5.56086 5.63804 5.67676 5.82286 5.83554 5.87403 5.94438 6.06935 6.10556 6.23145 6.29611 6.43240 6.58061 6.66771 6.77254 6.95659 7.05631 7.14573 7.28241 7.61411 7.65609 7.74095 7.83874 7.93715 8.05985 8.22144 8.41330 8.95664 9.57109 11.03932 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002391 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.557642 B =11708.121741 C =12203.163771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.028 4.028 3 C -0.171 4.171 4 C 0.100 3.900 5 N -0.482 5.482 6 C 0.109 3.891 7 C -0.146 4.146 8 C 0.187 3.813 9 H 0.107 0.893 10 C -0.161 4.161 11 N -0.704 5.704 12 C 0.514 3.486 13 O -0.502 6.502 14 C 0.500 3.500 15 O -0.543 6.543 16 N -0.561 5.561 17 C 0.107 3.893 18 C -0.122 4.122 19 C 0.045 3.955 20 C -0.511 4.511 21 H 0.055 0.945 22 C 0.061 3.939 23 N -0.890 5.890 24 Si 0.890 3.110 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.284 1.284 28 C -0.123 4.123 29 C 0.067 3.933 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.260 0.740 46 H 0.106 0.894 47 H 0.036 0.964 48 H 0.062 0.938 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 17.546 -15.793 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.036 4.036 3 C -0.191 4.191 4 C -0.057 4.057 5 N -0.191 5.191 6 C -0.048 4.048 7 C -0.149 4.149 8 C 0.082 3.918 9 H 0.124 0.876 10 C -0.219 4.219 11 N -0.360 5.360 12 C 0.296 3.704 13 O -0.377 6.377 14 C 0.282 3.718 15 O -0.422 6.422 16 N -0.292 5.292 17 C -0.015 4.015 18 C -0.161 4.161 19 C 0.027 3.973 20 C -0.550 4.550 21 H 0.073 0.927 22 C -0.140 4.140 23 N -0.529 5.529 24 Si 0.718 3.282 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.161 4.161 29 C -0.053 4.053 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.171 0.829 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.124 17.437 -15.821 23.903 hybrid contribution -0.656 -0.127 1.098 1.286 sum 3.467 17.310 -14.723 22.988 Atomic orbital electron populations 1.20977 0.89901 1.03838 1.03621 1.20130 0.96942 0.92032 0.94527 1.22051 0.95629 0.98556 1.02841 1.22814 0.91827 0.96327 0.94714 1.67720 1.41001 0.98328 1.12019 1.22515 0.90905 0.96479 0.94940 1.20774 0.95403 0.95055 1.03630 1.19777 0.93556 0.82758 0.95727 0.87553 1.22201 1.02377 1.02853 0.94436 1.45963 1.11367 1.20036 1.58609 1.20418 0.88463 0.82825 0.78702 1.90561 1.14703 1.76866 1.55592 1.19830 0.87730 0.83307 0.80980 1.90700 1.14255 1.76444 1.60826 1.48221 1.12187 1.18830 1.49995 1.21890 0.95120 0.87005 0.97444 1.22009 1.01244 1.00919 0.91881 1.18688 0.88449 0.93844 0.96325 1.21227 0.92370 1.48523 0.92844 0.92667 1.24968 0.96115 0.95222 0.97733 1.69856 0.98196 1.50352 1.34512 0.86564 0.78119 0.77748 0.85730 1.19857 1.21079 1.21055 1.22032 1.05353 0.98747 0.90012 1.23079 0.77681 1.05345 0.99239 0.89878 0.90634 0.90347 0.84500 0.82584 0.82935 0.90899 0.91085 0.91902 0.75169 0.90075 0.91468 0.91852 0.92821 0.95393 0.93024 0.87598 0.94531 0.91963 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 9.31 36.00 0.34 -0.41 16 2 C -0.03 -0.22 5.92 -104.32 -0.62 -0.84 16 3 C -0.17 -1.21 9.82 -39.44 -0.39 -1.60 16 4 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 5 N -0.48 -5.13 10.36 -13.25 -0.14 -5.27 16 6 C 0.11 1.09 10.41 -17.54 -0.18 0.91 16 7 C -0.15 -1.34 5.07 -104.48 -0.53 -1.87 16 8 C 0.19 1.81 2.11 -69.09 -0.15 1.66 16 9 H 0.11 1.11 6.53 -51.93 -0.34 0.77 16 10 C -0.16 -1.35 9.30 37.15 0.35 -1.00 16 11 N -0.70 -8.24 4.99 -55.37 -0.28 -8.52 16 12 C 0.51 7.73 7.71 -11.58 -0.09 7.64 16 13 O -0.50 -8.27 12.85 5.50 0.07 -8.20 16 14 C 0.50 8.66 7.73 -11.58 -0.09 8.58 16 15 O -0.54 -9.92 15.93 5.50 0.09 -9.83 16 16 N -0.56 -10.36 2.98 -173.24 -0.52 -10.88 16 17 C 0.11 1.93 6.44 -3.71 -0.02 1.91 16 18 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 19 C 0.05 1.09 2.06 -91.73 -0.19 0.90 16 20 C -0.51 -13.73 8.56 -34.44 -0.29 -14.03 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 23 N -0.89 -24.74 11.30 55.43 0.63 -24.11 16 24 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C -0.12 -2.83 5.15 -26.61 -0.14 -2.96 16 29 C 0.07 1.31 5.97 -3.69 -0.02 1.29 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.08 0.45 5.64 -51.93 -0.29 0.15 16 33 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.15 1.37 6.08 -52.49 -0.32 1.05 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.48 6.97 -51.93 -0.36 0.11 16 38 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.41 4.45 5.72 -40.82 -0.23 4.22 16 40 H 0.08 1.40 7.01 -51.92 -0.36 1.04 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.11 2.71 6.03 -51.93 -0.31 2.40 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.12 2.30 4.34 -54.68 -0.24 2.07 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -30.85 388.48 -8.84 -39.69 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.07 Total: 5.55 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.46 Total: -0.29 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.30 Total: -48.78 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.16 Total: -18.03 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.85 -8.84 -39.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346685824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.246 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds