Wall clock time and date at job start Wed Apr 1 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38677 * 120.78677 * 2 1 4 4 C 1.38183 * 119.16264 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.76585 * 359.97438 * 4 3 2 6 6 C 1.31858 * 121.72587 * 359.78330 * 5 4 3 7 7 C 1.38230 * 120.76324 * 0.47840 * 6 5 4 8 8 C 1.50699 * 120.42065 * 179.77891 * 7 6 5 9 9 H 1.08993 * 109.47009 * 144.72498 * 8 7 6 10 10 C 1.52995 * 109.47017 * 264.72423 * 8 7 6 11 11 N 1.46497 * 109.46833 * 24.72583 * 8 7 6 12 12 C 1.34779 * 119.99702 * 155.00376 * 11 8 7 13 13 O 1.21347 * 120.00075 * 359.97438 * 12 11 8 14 14 C 1.49457 * 119.99650 * 179.97438 * 12 11 8 15 15 O 1.21342 * 120.00380 * 353.23722 * 14 12 11 16 16 N 1.34782 * 119.99484 * 173.23167 * 14 12 11 17 17 C 1.46923 * 120.62684 * 171.44241 * 16 14 12 18 18 C 1.53197 * 108.89116 * 126.46037 * 17 16 14 19 19 C 1.53040 * 109.31091 * 54.56637 * 18 17 16 20 20 C 1.50700 * 109.46331 * 178.62515 * 19 18 17 21 21 H 1.08000 * 119.99425 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00362 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99766 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00163 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47487 * 120.00357 * 24 22 20 27 27 H 1.48500 * 109.47368 * 240.00305 * 24 22 20 28 28 C 1.53045 * 109.53845 * 298.63723 * 19 18 17 29 29 C 1.46960 * 120.65505 * 351.26403 * 16 14 12 30 30 H 1.09000 * 109.47143 * 269.97239 * 1 2 3 31 31 H 1.08998 * 109.47693 * 29.97485 * 1 2 3 32 32 H 1.09000 * 109.46946 * 149.98030 * 1 2 3 33 33 H 1.08004 * 120.41776 * 0.02562 * 3 2 1 34 34 H 1.07996 * 119.61672 * 180.02562 * 4 3 2 35 35 H 1.07998 * 119.62188 * 180.23803 * 6 5 4 36 36 H 1.08999 * 109.46985 * 179.97438 * 10 8 7 37 37 H 1.09005 * 109.47578 * 299.99907 * 10 8 7 38 38 H 1.09008 * 109.47445 * 59.99911 * 10 8 7 39 39 H 0.96995 * 120.00268 * 334.99273 * 11 8 7 40 40 H 1.09007 * 109.59032 * 6.60837 * 17 16 14 41 41 H 1.08996 * 109.59077 * 246.31988 * 17 16 14 42 42 H 1.08998 * 109.49713 * 174.51284 * 18 17 16 43 43 H 1.08994 * 109.49757 * 294.58305 * 18 17 16 44 44 H 1.09008 * 109.46079 * 58.65092 * 19 18 17 45 45 H 0.96996 * 119.99667 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.49836 * 181.31973 * 28 19 18 47 47 H 1.09004 * 109.49264 * 301.40758 * 28 19 18 48 48 H 1.08999 * 109.46492 * 113.75401 * 29 16 14 49 49 H 1.09003 * 109.71205 * 353.46093 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1522 -0.0005 5 7 4.2403 0.0003 -0.0005 6 6 3.5984 -1.1515 0.0042 7 6 2.2166 -1.1909 -0.0005 8 6 1.4909 -2.5116 -0.0001 9 1 0.5786 -2.4246 0.5900 10 6 1.1341 -2.8979 -1.4368 11 7 2.3533 -3.5424 0.5830 12 6 1.8070 -4.6364 1.1499 13 8 0.6010 -4.7673 1.1777 14 6 2.6868 -5.6882 1.7442 15 8 3.8908 -5.6196 1.6093 16 7 2.1429 -6.7130 2.4302 17 6 2.9697 -7.8493 2.8590 18 6 2.7905 -8.0520 4.3669 19 6 1.3010 -8.2038 4.6836 20 6 1.1232 -8.4372 6.1618 21 1 1.9861 -8.4731 6.8104 22 6 -0.1409 -8.6037 6.6864 23 7 -1.1917 -8.5594 5.8966 24 14 -0.3613 -8.8922 8.5187 25 1 0.9673 -8.8976 9.1822 26 1 -1.1968 -7.8075 9.0937 27 1 -1.0295 -10.2002 8.7371 28 6 0.5585 -6.9292 4.2760 29 6 0.7124 -6.7137 2.7671 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6965 2.1378 0.0004 34 1 4.1581 2.0755 -0.0001 35 1 4.1586 -2.0748 0.0079 36 1 0.6096 -3.8534 -1.4365 37 1 0.4924 -2.1309 -1.8707 38 1 2.0464 -2.9848 -2.0270 39 1 3.3173 -3.4376 0.5610 40 1 4.0173 -7.6422 2.6402 41 1 2.6569 -8.7492 2.3296 42 1 3.3222 -8.9509 4.6788 43 1 3.1902 -7.1894 4.8999 44 1 0.8968 -9.0520 4.1309 45 1 -2.0810 -8.6762 6.2657 46 1 -0.4983 -7.0289 4.5233 47 1 0.9787 -6.0769 4.8100 48 1 0.2132 -7.5201 2.2300 49 1 0.2683 -5.7584 2.4873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346685824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:49 Heat of formation + Delta-G solvation = -45.138740 kcal Electronic energy + Delta-G solvation = -30445.688312 eV Core-core repulsion = 26372.195648 eV Total energy + Delta-G solvation = -4073.492664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.21178 -41.40440 -39.90488 -38.59617 -37.26105 -35.40220 -34.91072 -33.05848 -32.61066 -31.76373 -30.68187 -28.83381 -28.39495 -26.44732 -25.26730 -24.26824 -24.00959 -23.11457 -22.04823 -21.54458 -20.54835 -18.89670 -18.42266 -18.30031 -17.67412 -17.32569 -17.09041 -16.61365 -16.51028 -16.34229 -15.77027 -15.57334 -15.37972 -15.20819 -14.80316 -14.66866 -14.56241 -14.43470 -14.07436 -13.90005 -13.80797 -13.60973 -13.48871 -13.38090 -13.25227 -13.15169 -12.84426 -12.58863 -12.50599 -12.34730 -12.16288 -12.14210 -11.95005 -11.52020 -11.03977 -11.01393 -10.67340 -10.46094 -10.43417 -10.35605 -10.08818 -9.98683 -9.69671 -8.07876 -6.21449 0.05585 0.23292 0.28103 1.23049 1.39873 1.42754 1.53049 2.04806 2.40341 2.43876 2.76176 3.16114 3.18668 3.31041 3.60108 3.76648 3.85182 3.95495 4.09666 4.15240 4.26290 4.28951 4.30567 4.45132 4.49641 4.55108 4.57398 4.62800 4.71713 4.75805 4.78038 4.81900 4.86485 4.93067 5.01251 5.11854 5.14252 5.18585 5.23028 5.29394 5.37172 5.37938 5.46891 5.63004 5.71155 5.92270 5.97390 6.10129 6.25224 6.38193 6.61031 6.85621 6.89046 6.97553 7.46306 8.95952 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002391 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.557642 B =11708.121741 C =12203.163771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.032 4.032 3 C -0.165 4.165 4 C 0.090 3.910 5 N -0.512 5.512 6 C 0.092 3.908 7 C -0.153 4.153 8 C 0.188 3.812 9 H 0.102 0.898 10 C -0.155 4.155 11 N -0.688 5.688 12 C 0.517 3.483 13 O -0.518 6.518 14 C 0.500 3.500 15 O -0.550 6.550 16 N -0.570 5.570 17 C 0.112 3.888 18 C -0.113 4.113 19 C 0.042 3.958 20 C -0.532 4.532 21 H 0.050 0.950 22 C 0.015 3.985 23 N -0.913 5.913 24 Si 0.950 3.050 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.280 1.280 28 C -0.113 4.113 29 C 0.084 3.916 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.153 0.847 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.415 0.585 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.005 0.995 45 H 0.261 0.739 46 H 0.078 0.922 47 H 0.023 0.977 48 H 0.061 0.939 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 19.301 -16.551 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.041 4.041 3 C -0.185 4.185 4 C -0.066 4.066 5 N -0.221 5.221 6 C -0.065 4.065 7 C -0.156 4.156 8 C 0.084 3.916 9 H 0.120 0.880 10 C -0.213 4.213 11 N -0.343 5.343 12 C 0.298 3.702 13 O -0.396 6.396 14 C 0.282 3.718 15 O -0.430 6.430 16 N -0.301 5.301 17 C -0.010 4.010 18 C -0.151 4.151 19 C 0.024 3.976 20 C -0.571 4.571 21 H 0.068 0.932 22 C -0.184 4.184 23 N -0.553 5.553 24 Si 0.777 3.223 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.206 1.206 28 C -0.152 4.152 29 C -0.037 4.037 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.185 0.815 34 H 0.197 0.803 35 H 0.170 0.830 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.254 0.746 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.042 0.958 48 H 0.079 0.921 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.221 19.215 -16.601 25.742 hybrid contribution -0.633 -0.578 1.307 1.563 sum 3.588 18.637 -15.294 24.375 Atomic orbital electron populations 1.21038 0.88414 1.04946 1.03911 1.20443 0.98081 0.91813 0.93738 1.22388 0.95268 0.99543 1.01274 1.23310 0.92818 0.96457 0.94012 1.67706 1.42028 0.99152 1.13245 1.22573 0.91391 0.96633 0.95867 1.20708 0.95126 0.95134 1.04618 1.19902 0.92938 0.82478 0.96253 0.88035 1.22164 1.02781 1.02820 0.93560 1.45962 1.11972 1.19231 1.57102 1.19996 0.87865 0.83198 0.79110 1.90538 1.15031 1.77281 1.56719 1.20210 0.87903 0.83252 0.80386 1.90692 1.14747 1.76587 1.60976 1.48201 1.11629 1.19505 1.50781 1.21849 0.95861 0.87642 0.95632 1.21854 0.98593 1.00911 0.93789 1.18659 0.90903 0.93318 0.94744 1.21569 0.92392 1.48738 0.94358 0.93220 1.25684 0.95951 0.95110 1.01683 1.69978 0.98462 1.50764 1.36049 0.85620 0.78030 0.77662 0.81013 1.19498 1.20754 1.20588 1.21804 1.03222 0.97677 0.92482 1.22820 0.78625 1.05802 0.96488 0.89888 0.88547 0.90303 0.81464 0.80260 0.82997 0.92186 0.89030 0.91546 0.74586 0.88817 0.90168 0.90984 0.93775 0.97720 0.92961 0.90375 0.95777 0.92058 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.31 71.23 0.66 -0.50 16 2 C -0.03 -0.44 5.92 -19.67 -0.12 -0.56 16 3 C -0.17 -1.90 9.82 22.36 0.22 -1.68 16 4 C 0.09 1.31 11.18 84.67 0.95 2.26 16 5 N -0.51 -10.45 10.36 -195.84 -2.03 -12.48 16 6 C 0.09 1.78 10.41 84.69 0.88 2.66 16 7 C -0.15 -2.61 5.07 -19.77 -0.10 -2.71 16 8 C 0.19 3.44 2.11 44.24 0.09 3.53 16 9 H 0.10 2.00 6.53 -2.39 -0.02 1.99 16 10 C -0.16 -2.38 9.30 71.98 0.67 -1.71 16 11 N -0.69 -15.56 4.99 -447.45 -2.23 -17.79 16 12 C 0.52 15.21 7.71 87.27 0.67 15.88 16 13 O -0.52 -16.79 12.85 -3.24 -0.04 -16.83 16 14 C 0.50 16.95 7.73 87.27 0.67 17.62 16 15 O -0.55 -19.53 15.93 -3.22 -0.05 -19.58 16 16 N -0.57 -20.78 2.98 -820.38 -2.44 -23.23 16 17 C 0.11 3.94 6.44 86.36 0.56 4.49 16 18 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 19 C 0.04 2.08 2.06 -11.51 -0.02 2.05 16 20 C -0.53 -29.08 8.56 25.60 0.22 -28.86 16 21 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 22 C 0.01 0.79 5.30 84.65 0.45 1.24 16 23 N -0.91 -51.66 11.30 21.45 0.24 -51.42 16 24 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 28 C -0.11 -5.33 5.15 30.67 0.16 -5.18 16 29 C 0.08 3.29 5.97 86.36 0.52 3.80 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.49 8.10 -2.39 -0.02 0.47 16 32 H 0.08 0.72 5.64 -2.39 -0.01 0.71 16 33 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 34 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.15 2.72 6.08 -2.91 -0.02 2.70 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.03 6.97 -2.38 -0.02 1.01 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 39 H 0.41 8.73 5.72 -92.71 -0.53 8.20 16 40 H 0.09 3.10 7.01 -2.38 -0.02 3.08 16 41 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.08 4.14 6.03 -2.39 -0.01 4.12 16 47 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.13 4.93 4.34 -45.99 -0.20 4.73 16 Total: -1.00 -66.46 388.48 2.37 -64.08 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.26 Total: 23.91 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.64 Total: 7.88 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -6.46 Total: -104.92 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.09 Total: -36.41 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.46 2.37 -64.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346685824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.944 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds