Wall clock time and date at job start Wed Apr 1 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38667 * 120.78898 * 2 1 4 4 C 1.38189 * 119.16310 * 180.27847 * 3 2 1 5 5 N 1.31876 * 120.76190 * 359.69547 * 4 3 2 6 6 C 1.31860 * 121.73051 * 0.02994 * 5 4 3 7 7 C 1.38225 * 120.76028 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.41875 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47073 * 209.36479 * 8 7 6 10 10 C 1.53001 * 109.47129 * 89.36619 * 8 7 6 11 11 N 1.46493 * 109.47193 * 329.36856 * 8 7 6 12 12 C 1.34776 * 120.00170 * 210.22561 * 11 8 7 13 13 O 1.21349 * 119.99915 * 0.02562 * 12 11 8 14 14 C 1.49447 * 120.00158 * 179.97438 * 12 11 8 15 15 O 1.21353 * 120.00459 * 353.35502 * 14 12 11 16 16 N 1.34780 * 120.00121 * 173.35869 * 14 12 11 17 17 C 1.46927 * 120.62973 * 174.58303 * 16 14 12 18 18 C 1.53201 * 108.89184 * 126.46071 * 17 16 14 19 19 C 1.53036 * 109.31446 * 54.55849 * 18 17 16 20 20 C 1.50703 * 109.46106 * 178.62827 * 19 18 17 21 21 H 1.08001 * 120.00010 * 0.31115 * 20 19 18 22 22 C 1.37873 * 120.00058 * 180.30821 * 20 19 18 23 23 N 1.31515 * 119.99999 * 7.48452 * 22 20 19 24 24 Si 1.86806 * 119.99888 * 187.48146 * 22 20 19 25 25 H 1.48496 * 109.46941 * 95.00003 * 24 22 20 26 26 H 1.48500 * 109.46938 * 214.99828 * 24 22 20 27 27 H 1.48500 * 109.46909 * 334.99660 * 24 22 20 28 28 C 1.53038 * 109.54034 * 298.63588 * 19 18 17 29 29 C 1.46958 * 120.65172 * 354.39105 * 16 14 12 30 30 H 1.09003 * 109.47419 * 270.28700 * 1 2 3 31 31 H 1.09001 * 109.47249 * 30.29207 * 1 2 3 32 32 H 1.09003 * 109.47511 * 150.29067 * 1 2 3 33 33 H 1.08000 * 120.41861 * 0.02562 * 3 2 1 34 34 H 1.07998 * 119.61680 * 179.72567 * 4 3 2 35 35 H 1.07998 * 119.61779 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.47204 * 59.99769 * 10 8 7 37 37 H 1.08998 * 109.47638 * 180.02562 * 10 8 7 38 38 H 1.09008 * 109.47471 * 300.00234 * 10 8 7 39 39 H 0.97003 * 120.00320 * 30.22594 * 11 8 7 40 40 H 1.08999 * 109.59071 * 6.60014 * 17 16 14 41 41 H 1.08999 * 109.58704 * 246.31338 * 17 16 14 42 42 H 1.08997 * 109.49544 * 174.51416 * 18 17 16 43 43 H 1.09000 * 109.49485 * 294.57159 * 18 17 16 44 44 H 1.09007 * 109.45983 * 58.65763 * 19 18 17 45 45 H 0.97009 * 119.99586 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.50040 * 181.31695 * 28 19 18 47 47 H 1.08998 * 109.49864 * 301.41291 * 28 19 18 48 48 H 1.08995 * 109.46609 * 113.75872 * 29 16 14 49 49 H 1.09001 * 109.71252 * 353.47097 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 -0.0059 5 7 4.2402 0.0001 -0.0054 6 6 3.5983 -1.1516 0.0001 7 6 2.2166 -1.1909 0.0060 8 6 1.4908 -2.5116 0.0128 9 1 0.5288 -2.4000 -0.4873 10 6 1.2653 -2.9622 1.4575 11 7 2.2942 -3.5139 -0.6915 12 6 1.6885 -4.5257 -1.3441 13 8 0.4777 -4.6061 -1.3487 14 6 2.5080 -5.5479 -2.0631 15 8 3.7087 -5.4026 -2.1624 16 7 1.9136 -6.6311 -2.6015 17 6 2.6852 -7.5833 -3.4118 18 6 2.4861 -8.9925 -2.8448 19 6 0.9891 -9.3007 -2.7688 20 6 0.7903 -10.6990 -2.2430 21 1 1.6458 -11.3051 -1.9838 22 6 -0.4836 -11.2044 -2.0928 23 7 -1.5170 -10.5274 -2.5437 24 14 -0.7416 -12.8509 -1.2489 25 1 -1.0425 -12.6288 0.1881 26 1 -1.8776 -13.5622 -1.8884 27 1 0.4901 -13.6706 -1.3759 28 6 0.3078 -8.3019 -1.8305 29 6 0.4822 -6.8849 -2.3860 30 1 -0.3634 0.0051 1.0277 31 1 -0.3634 0.8874 -0.5184 32 1 -0.3634 -0.8926 -0.5093 33 1 1.6966 2.1377 0.0004 34 1 4.1582 2.0754 -0.0104 35 1 4.1585 -2.0749 -0.0002 36 1 0.6676 -2.2164 1.9816 37 1 0.7408 -3.9176 1.4625 38 1 2.2274 -3.0737 1.9578 39 1 3.2620 -3.4494 -0.6882 40 1 3.7426 -7.3210 -3.3758 41 1 2.3359 -7.5520 -4.4438 42 1 2.9745 -9.7185 -3.4948 43 1 2.9206 -9.0477 -1.8466 44 1 0.5510 -9.2212 -3.7638 45 1 -2.4133 -10.8833 -2.4383 46 1 -0.7542 -8.5363 -1.7586 47 1 0.7622 -8.3634 -0.8417 48 1 -0.0491 -6.7960 -3.3335 49 1 0.0837 -6.1618 -1.6743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346685825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:54 Heat of formation + Delta-G solvation = -25.807760 kcal Electronic energy + Delta-G solvation = -30413.881708 eV Core-core repulsion = 26341.227298 eV Total energy + Delta-G solvation = -4072.654410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.19172 -40.45548 -38.62879 -37.05501 -36.27810 -34.32491 -33.47673 -31.84208 -31.23715 -30.11536 -29.95723 -28.25163 -26.69356 -25.18014 -24.34306 -22.97780 -22.48221 -22.08184 -21.11715 -20.32134 -19.01879 -17.57333 -17.39272 -16.73236 -16.53187 -16.24325 -15.87795 -15.70148 -15.30143 -14.90029 -14.77841 -14.52829 -14.10152 -13.92967 -13.80200 -13.38920 -13.30288 -13.11330 -13.06583 -12.96737 -12.85747 -12.66279 -12.50270 -12.33678 -12.03938 -11.72035 -11.46231 -11.42940 -10.97370 -10.87440 -10.61241 -10.38589 -10.13203 -9.86142 -9.78841 -9.73440 -9.55342 -9.35994 -9.28690 -9.14073 -8.59441 -8.32829 -8.12296 -6.03297 -4.06584 0.67871 0.84466 1.55700 2.41495 3.28993 3.34347 3.36667 3.39459 3.40146 3.66804 3.93978 4.21665 4.29915 4.41878 4.42349 4.47357 4.56104 4.88641 4.93164 5.03276 5.06483 5.15142 5.27756 5.29435 5.37029 5.46664 5.52743 5.62797 5.70261 5.80555 5.85593 5.87097 5.94686 6.06769 6.09886 6.20613 6.28584 6.41733 6.57803 6.67048 6.76796 6.94551 7.04458 7.12148 7.24453 7.60013 7.65463 7.73435 7.83598 7.92963 8.01093 8.20662 8.40741 8.96315 9.57393 11.04207 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.002287 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.484753 B =12240.891129 C =12920.676125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.028 4.028 3 C -0.172 4.172 4 C 0.100 3.900 5 N -0.483 5.483 6 C 0.111 3.889 7 C -0.146 4.146 8 C 0.183 3.817 9 H 0.110 0.890 10 C -0.160 4.160 11 N -0.703 5.703 12 C 0.515 3.485 13 O -0.502 6.502 14 C 0.499 3.501 15 O -0.543 6.543 16 N -0.559 5.559 17 C 0.106 3.894 18 C -0.122 4.122 19 C 0.045 3.955 20 C -0.514 4.514 21 H 0.055 0.945 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.888 3.112 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.119 4.119 29 C 0.059 3.941 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.030 0.970 45 H 0.260 0.740 46 H 0.096 0.904 47 H 0.037 0.963 48 H 0.062 0.938 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 23.532 5.859 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.037 4.037 3 C -0.191 4.191 4 C -0.057 4.057 5 N -0.191 5.191 6 C -0.046 4.046 7 C -0.149 4.149 8 C 0.078 3.922 9 H 0.128 0.872 10 C -0.218 4.218 11 N -0.358 5.358 12 C 0.297 3.703 13 O -0.378 6.378 14 C 0.281 3.719 15 O -0.423 6.423 16 N -0.290 5.290 17 C -0.015 4.015 18 C -0.160 4.160 19 C 0.026 3.974 20 C -0.552 4.552 21 H 0.073 0.927 22 C -0.139 4.139 23 N -0.527 5.527 24 Si 0.716 3.284 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.157 4.157 29 C -0.061 4.061 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.171 0.829 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.988 23.509 5.759 24.712 hybrid contribution -0.686 -0.940 0.435 1.242 sum 4.302 22.568 6.194 23.795 Atomic orbital electron populations 1.20967 0.89927 1.03986 1.03344 1.20139 0.96939 0.92077 0.94529 1.22044 0.95632 0.98550 1.02908 1.22809 0.91820 0.96327 0.94720 1.67717 1.41020 0.98342 1.12067 1.22524 0.90901 0.96476 0.94746 1.20795 0.95412 0.95109 1.03589 1.19870 0.94994 0.83230 0.94069 0.87211 1.22181 1.02770 1.02671 0.94157 1.45947 1.11389 1.26057 1.52372 1.20428 0.88123 0.82643 0.79102 1.90497 1.14058 1.72647 1.60577 1.19808 0.87435 0.83358 0.81295 1.90706 1.14006 1.77208 1.60356 1.48222 1.12349 1.21041 1.47436 1.21903 0.96108 0.89750 0.93779 1.22005 1.01204 0.92679 1.00111 1.18683 0.88516 0.94152 0.96007 1.21179 0.92090 0.98692 1.43262 0.92692 1.24957 0.96245 0.97253 0.95428 1.69921 0.98639 1.38710 1.45429 0.86644 0.77787 0.84160 0.79809 1.20759 1.21305 1.19947 1.21950 1.04464 0.91020 0.98312 1.23222 0.77638 1.01959 1.03307 0.89983 0.90678 0.90257 0.84535 0.82608 0.82934 0.91133 0.90870 0.91886 0.75198 0.90045 0.91456 0.91808 0.92845 0.95166 0.92995 0.88539 0.94383 0.91984 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 9.67 36.01 0.35 -0.37 16 2 C -0.03 -0.22 5.92 -104.32 -0.62 -0.84 16 3 C -0.17 -1.18 9.82 -39.44 -0.39 -1.56 16 4 C 0.10 0.79 11.18 -17.55 -0.20 0.60 16 5 N -0.48 -5.01 10.36 -13.25 -0.14 -5.15 16 6 C 0.11 1.08 10.38 -17.54 -0.18 0.90 16 7 C -0.15 -1.31 5.03 -104.48 -0.53 -1.83 16 8 C 0.18 1.75 2.52 -69.09 -0.17 1.57 16 9 H 0.11 1.11 5.32 -51.93 -0.28 0.83 16 10 C -0.16 -1.38 9.50 37.16 0.35 -1.02 16 11 N -0.70 -8.12 4.95 -55.37 -0.27 -8.39 16 12 C 0.51 7.68 7.77 -11.59 -0.09 7.59 16 13 O -0.50 -8.20 12.68 5.50 0.07 -8.13 16 14 C 0.50 8.60 7.75 -11.58 -0.09 8.51 16 15 O -0.54 -9.89 15.91 5.49 0.09 -9.80 16 16 N -0.56 -10.28 2.98 -173.24 -0.52 -10.79 16 17 C 0.11 1.91 6.44 -3.71 -0.02 1.89 16 18 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 19 C 0.04 1.08 2.00 -91.73 -0.18 0.90 16 20 C -0.51 -13.79 8.55 -34.44 -0.29 -14.08 16 21 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 22 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 23 N -0.89 -24.79 11.68 55.43 0.65 -24.14 16 24 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 C -0.12 -2.71 5.16 -26.61 -0.14 -2.84 16 29 C 0.06 1.14 6.06 -3.69 -0.02 1.12 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.09 16 32 H 0.08 0.50 6.07 -51.93 -0.32 0.19 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.15 1.32 6.33 -52.49 -0.33 0.99 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.41 4.38 5.99 -40.82 -0.24 4.14 16 40 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.10 2.44 6.36 -51.93 -0.33 2.11 16 47 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.13 2.42 4.14 -55.68 -0.23 2.19 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -30.91 390.60 -8.85 -39.75 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.13 Total: 5.27 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.46 Total: -0.49 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.28 Total: -48.47 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.16 Total: -17.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.91 -8.85 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346685825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.946 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds