Wall clock time and date at job start Wed Apr 1 2020 03:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38667 * 120.78898 * 2 1 4 4 C 1.38189 * 119.16310 * 180.27847 * 3 2 1 5 5 N 1.31876 * 120.76190 * 359.69547 * 4 3 2 6 6 C 1.31860 * 121.73051 * 0.02994 * 5 4 3 7 7 C 1.38225 * 120.76028 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.41875 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47073 * 209.36479 * 8 7 6 10 10 C 1.53001 * 109.47129 * 89.36619 * 8 7 6 11 11 N 1.46493 * 109.47193 * 329.36856 * 8 7 6 12 12 C 1.34776 * 120.00170 * 210.22561 * 11 8 7 13 13 O 1.21349 * 119.99915 * 0.02562 * 12 11 8 14 14 C 1.49447 * 120.00158 * 179.97438 * 12 11 8 15 15 O 1.21353 * 120.00459 * 353.35502 * 14 12 11 16 16 N 1.34780 * 120.00121 * 173.35869 * 14 12 11 17 17 C 1.46927 * 120.62973 * 174.58303 * 16 14 12 18 18 C 1.53201 * 108.89184 * 126.46071 * 17 16 14 19 19 C 1.53036 * 109.31446 * 54.55849 * 18 17 16 20 20 C 1.50703 * 109.46106 * 178.62827 * 19 18 17 21 21 H 1.08001 * 120.00010 * 0.31115 * 20 19 18 22 22 C 1.37873 * 120.00058 * 180.30821 * 20 19 18 23 23 N 1.31515 * 119.99999 * 7.48452 * 22 20 19 24 24 Si 1.86806 * 119.99888 * 187.48146 * 22 20 19 25 25 H 1.48496 * 109.46941 * 95.00003 * 24 22 20 26 26 H 1.48500 * 109.46938 * 214.99828 * 24 22 20 27 27 H 1.48500 * 109.46909 * 334.99660 * 24 22 20 28 28 C 1.53038 * 109.54034 * 298.63588 * 19 18 17 29 29 C 1.46958 * 120.65172 * 354.39105 * 16 14 12 30 30 H 1.09003 * 109.47419 * 270.28700 * 1 2 3 31 31 H 1.09001 * 109.47249 * 30.29207 * 1 2 3 32 32 H 1.09003 * 109.47511 * 150.29067 * 1 2 3 33 33 H 1.08000 * 120.41861 * 0.02562 * 3 2 1 34 34 H 1.07998 * 119.61680 * 179.72567 * 4 3 2 35 35 H 1.07998 * 119.61779 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.47204 * 59.99769 * 10 8 7 37 37 H 1.08998 * 109.47638 * 180.02562 * 10 8 7 38 38 H 1.09008 * 109.47471 * 300.00234 * 10 8 7 39 39 H 0.97003 * 120.00320 * 30.22594 * 11 8 7 40 40 H 1.08999 * 109.59071 * 6.60014 * 17 16 14 41 41 H 1.08999 * 109.58704 * 246.31338 * 17 16 14 42 42 H 1.08997 * 109.49544 * 174.51416 * 18 17 16 43 43 H 1.09000 * 109.49485 * 294.57159 * 18 17 16 44 44 H 1.09007 * 109.45983 * 58.65763 * 19 18 17 45 45 H 0.97009 * 119.99586 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.50040 * 181.31695 * 28 19 18 47 47 H 1.08998 * 109.49864 * 301.41291 * 28 19 18 48 48 H 1.08995 * 109.46609 * 113.75872 * 29 16 14 49 49 H 1.09001 * 109.71252 * 353.47097 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 -0.0059 5 7 4.2402 0.0001 -0.0054 6 6 3.5983 -1.1516 0.0001 7 6 2.2166 -1.1909 0.0060 8 6 1.4908 -2.5116 0.0128 9 1 0.5288 -2.4000 -0.4873 10 6 1.2653 -2.9622 1.4575 11 7 2.2942 -3.5139 -0.6915 12 6 1.6885 -4.5257 -1.3441 13 8 0.4777 -4.6061 -1.3487 14 6 2.5080 -5.5479 -2.0631 15 8 3.7087 -5.4026 -2.1624 16 7 1.9136 -6.6311 -2.6015 17 6 2.6852 -7.5833 -3.4118 18 6 2.4861 -8.9925 -2.8448 19 6 0.9891 -9.3007 -2.7688 20 6 0.7903 -10.6990 -2.2430 21 1 1.6458 -11.3051 -1.9838 22 6 -0.4836 -11.2044 -2.0928 23 7 -1.5170 -10.5274 -2.5437 24 14 -0.7416 -12.8509 -1.2489 25 1 -1.0425 -12.6288 0.1881 26 1 -1.8776 -13.5622 -1.8884 27 1 0.4901 -13.6706 -1.3759 28 6 0.3078 -8.3019 -1.8305 29 6 0.4822 -6.8849 -2.3860 30 1 -0.3634 0.0051 1.0277 31 1 -0.3634 0.8874 -0.5184 32 1 -0.3634 -0.8926 -0.5093 33 1 1.6966 2.1377 0.0004 34 1 4.1582 2.0754 -0.0104 35 1 4.1585 -2.0749 -0.0002 36 1 0.6676 -2.2164 1.9816 37 1 0.7408 -3.9176 1.4625 38 1 2.2274 -3.0737 1.9578 39 1 3.2620 -3.4494 -0.6882 40 1 3.7426 -7.3210 -3.3758 41 1 2.3359 -7.5520 -4.4438 42 1 2.9745 -9.7185 -3.4948 43 1 2.9206 -9.0477 -1.8466 44 1 0.5510 -9.2212 -3.7638 45 1 -2.4133 -10.8833 -2.4383 46 1 -0.7542 -8.5363 -1.7586 47 1 0.7622 -8.3634 -0.8417 48 1 -0.0491 -6.7960 -3.3335 49 1 0.0837 -6.1618 -1.6743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346685825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:52 Heat of formation + Delta-G solvation = -44.555697 kcal Electronic energy + Delta-G solvation = -30414.694680 eV Core-core repulsion = 26341.227298 eV Total energy + Delta-G solvation = -4073.467381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.21553 -41.39714 -39.90455 -38.60275 -37.25660 -35.38595 -34.89121 -33.06651 -32.64266 -31.78197 -30.67043 -28.77856 -28.39596 -26.46856 -25.29656 -24.24978 -24.01167 -23.11017 -22.01635 -21.61128 -20.55223 -18.89008 -18.42972 -18.28227 -17.63309 -17.35460 -17.08841 -16.67969 -16.47965 -16.35084 -15.69062 -15.62049 -15.39428 -15.18990 -14.81908 -14.64656 -14.49260 -14.48011 -14.07973 -13.95540 -13.83060 -13.60684 -13.55796 -13.37446 -13.22295 -13.09862 -12.81144 -12.68939 -12.53592 -12.33437 -12.17003 -12.07840 -11.96285 -11.52611 -11.10483 -10.96753 -10.59156 -10.43114 -10.41634 -10.37258 -10.11123 -9.96695 -9.71106 -8.10286 -6.20403 0.06026 0.24128 0.27987 1.23158 1.40699 1.42914 1.52059 2.04961 2.40478 2.44157 2.77535 3.17124 3.18365 3.31465 3.60595 3.77227 3.86222 3.90911 4.09442 4.16231 4.26238 4.29730 4.31721 4.47757 4.48287 4.54273 4.56977 4.61819 4.74364 4.75826 4.77781 4.81817 4.86094 4.92840 5.00623 5.13668 5.15317 5.18948 5.23568 5.28081 5.37031 5.38431 5.46114 5.64071 5.72237 5.91763 5.97085 6.05575 6.24963 6.37325 6.61712 6.85587 6.89744 6.98419 7.46454 8.95979 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.002287 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.484753 B =12240.891129 C =12920.676125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.033 4.033 3 C -0.166 4.166 4 C 0.091 3.909 5 N -0.513 5.513 6 C 0.095 3.905 7 C -0.154 4.154 8 C 0.185 3.815 9 H 0.108 0.892 10 C -0.156 4.156 11 N -0.686 5.686 12 C 0.518 3.482 13 O -0.519 6.519 14 C 0.500 3.500 15 O -0.551 6.551 16 N -0.568 5.568 17 C 0.111 3.889 18 C -0.113 4.113 19 C 0.042 3.958 20 C -0.534 4.534 21 H 0.050 0.950 22 C 0.016 3.984 23 N -0.913 5.913 24 Si 0.948 3.052 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.109 4.109 29 C 0.075 3.925 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.415 0.585 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.004 0.996 45 H 0.261 0.739 46 H 0.068 0.932 47 H 0.028 0.972 48 H 0.059 0.941 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 25.429 6.629 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.185 4.185 4 C -0.065 4.065 5 N -0.222 5.222 6 C -0.062 4.062 7 C -0.156 4.156 8 C 0.081 3.919 9 H 0.125 0.875 10 C -0.214 4.214 11 N -0.340 5.340 12 C 0.299 3.701 13 O -0.396 6.396 14 C 0.282 3.718 15 O -0.431 6.431 16 N -0.299 5.299 17 C -0.011 4.011 18 C -0.151 4.151 19 C 0.023 3.977 20 C -0.572 4.572 21 H 0.069 0.931 22 C -0.183 4.183 23 N -0.552 5.552 24 Si 0.774 3.226 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.148 4.148 29 C -0.046 4.046 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.185 0.815 34 H 0.197 0.803 35 H 0.170 0.830 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.254 0.746 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.022 0.978 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.077 0.923 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.216 25.432 6.544 26.774 hybrid contribution -0.698 -1.428 0.205 1.602 sum 4.518 24.005 6.748 25.341 Atomic orbital electron populations 1.21024 0.88472 1.04340 1.04314 1.20450 0.98056 0.91877 0.93717 1.22373 0.95272 0.99511 1.01377 1.23304 0.92797 0.96462 0.93974 1.67707 1.42035 0.99162 1.13302 1.22587 0.91361 0.96646 0.95596 1.20704 0.95136 0.95105 1.04678 1.19994 0.94567 0.83059 0.94257 0.87454 1.22150 1.03106 1.02437 0.93672 1.45945 1.11876 1.25211 1.50978 1.20002 0.87627 0.82921 0.79516 1.90469 1.14431 1.73160 1.61553 1.20188 0.87504 0.83333 0.80745 1.90698 1.14469 1.77416 1.60481 1.48202 1.11823 1.21803 1.48092 1.21850 0.96878 0.88216 0.94113 1.21848 0.98453 0.94633 1.00137 1.18651 0.90962 0.93506 0.94546 1.21534 0.92143 1.00096 1.43462 0.93146 1.25670 0.96097 1.00514 0.95977 1.70034 0.98894 1.40119 1.46184 0.85700 0.77723 0.80391 0.78782 1.20351 1.20959 1.19468 1.21730 1.02299 0.92994 0.97749 1.22986 0.78523 0.99827 1.03219 0.88622 0.89104 0.91122 0.81512 0.80281 0.82952 0.89128 0.92422 0.91568 0.74595 0.88777 0.90386 0.91067 0.93523 0.97785 0.92969 0.91366 0.95284 0.92263 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.67 71.24 0.69 -0.41 16 2 C -0.03 -0.43 5.92 -19.67 -0.12 -0.54 16 3 C -0.17 -1.81 9.82 22.36 0.22 -1.59 16 4 C 0.09 1.26 11.18 84.67 0.95 2.21 16 5 N -0.51 -10.12 10.36 -195.84 -2.03 -12.14 16 6 C 0.09 1.77 10.38 84.69 0.88 2.65 16 7 C -0.15 -2.53 5.03 -19.77 -0.10 -2.63 16 8 C 0.19 3.32 2.52 44.25 0.11 3.44 16 9 H 0.11 2.04 5.32 -2.39 -0.01 2.03 16 10 C -0.16 -2.49 9.50 71.98 0.68 -1.81 16 11 N -0.69 -15.28 4.95 -447.45 -2.22 -17.49 16 12 C 0.52 15.08 7.77 87.27 0.68 15.76 16 13 O -0.52 -16.64 12.68 -3.24 -0.04 -16.68 16 14 C 0.50 16.82 7.75 87.27 0.68 17.49 16 15 O -0.55 -19.44 15.91 -3.26 -0.05 -19.49 16 16 N -0.57 -20.61 2.98 -820.38 -2.44 -23.06 16 17 C 0.11 3.92 6.44 86.37 0.56 4.47 16 18 C -0.11 -4.58 5.30 30.67 0.16 -4.42 16 19 C 0.04 2.06 2.00 -11.51 -0.02 2.03 16 20 C -0.53 -29.14 8.55 25.60 0.22 -28.92 16 21 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 22 C 0.02 0.90 5.20 84.65 0.44 1.35 16 23 N -0.91 -51.96 11.68 21.45 0.25 -51.71 16 24 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 C -0.11 -5.09 5.16 30.67 0.16 -4.93 16 29 C 0.08 2.94 6.06 86.36 0.52 3.46 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 32 H 0.07 0.77 6.07 -2.39 -0.01 0.75 16 33 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 35 H 0.15 2.61 6.33 -2.91 -0.02 2.59 16 36 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.42 8.56 5.99 -92.71 -0.56 8.00 16 40 H 0.09 3.11 7.00 -2.39 -0.02 3.09 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 46 H 0.07 3.57 6.36 -2.39 -0.02 3.56 16 47 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.14 5.21 4.14 -61.79 -0.26 4.96 16 Total: -1.00 -66.59 390.60 2.38 -64.21 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.18 Total: 23.35 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.70 Total: 7.62 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -6.44 Total: -104.41 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.09 Total: -36.17 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.59 2.38 -64.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346685825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.656 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds