Wall clock time and date at job start Wed Apr 1 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35241 * 126.07160 * 2 1 4 4 C 1.40409 * 107.87202 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97655 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99686 * 0.02562 * 5 4 3 7 7 O 1.21289 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99521 * 179.97438 * 6 5 4 9 9 C 1.55920 * 115.85121 * 62.13116 * 8 6 5 10 10 C 1.54604 * 104.58771 * 159.95575 * 9 8 6 11 11 C 1.55980 * 104.46508 * 0.32678 * 10 9 8 12 12 H 1.08995 * 116.07655 * 199.12269 * 11 10 9 13 13 C 1.55967 * 104.30291 * 69.20570 * 11 10 9 14 14 C 1.53260 * 104.97375 * 288.98034 * 13 11 10 15 15 O 1.20758 * 127.85150 * 180.34472 * 14 13 11 16 16 C 1.56934 * 116.13655 * 180.02562 * 8 6 5 17 17 C 1.53002 * 112.08871 * 296.85698 * 16 8 6 18 18 C 1.52998 * 112.08828 * 63.54551 * 16 8 6 19 19 N 1.31227 * 108.04830 * 359.72240 * 4 3 2 20 20 N 1.34970 * 126.07182 * 179.97438 * 2 1 3 21 21 C 1.46506 * 125.97166 * 0.02562 * 20 2 1 22 22 C 1.50703 * 109.46877 * 90.00139 * 21 20 2 23 23 H 1.08005 * 119.99817 * 0.02562 * 22 21 20 24 24 C 1.37871 * 120.00081 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00254 * 180.02562 * 24 22 21 26 26 Si 1.86811 * 119.99850 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46778 * 89.99559 * 26 24 22 28 28 H 1.48493 * 109.46886 * 209.99446 * 26 24 22 29 29 H 1.48492 * 109.47026 * 329.99859 * 26 24 22 30 30 H 1.08998 * 109.46738 * 270.02517 * 1 2 3 31 31 H 1.08995 * 109.46791 * 30.02059 * 1 2 3 32 32 H 1.09000 * 109.47209 * 150.02544 * 1 2 3 33 33 H 1.07997 * 126.06215 * 0.02562 * 3 2 1 34 34 H 0.96997 * 120.00134 * 180.02562 * 5 4 3 35 35 H 1.09003 * 110.41188 * 278.73490 * 9 8 6 36 36 H 1.09000 * 110.41553 * 41.17536 * 9 8 6 37 37 H 1.08999 * 110.43590 * 241.57977 * 10 9 8 38 38 H 1.09003 * 110.54014 * 119.12899 * 10 9 8 39 39 H 1.08998 * 110.36108 * 48.46903 * 13 11 10 40 40 H 1.09001 * 110.35391 * 170.77129 * 13 11 10 41 41 H 1.09001 * 109.46530 * 60.00399 * 17 16 8 42 42 H 1.08995 * 109.47292 * 180.02562 * 17 16 8 43 43 H 1.08997 * 109.47743 * 300.00595 * 17 16 8 44 44 H 1.09006 * 109.47069 * 59.99947 * 18 16 8 45 45 H 1.09000 * 109.47112 * 179.97438 * 18 16 8 46 46 H 1.08996 * 109.47457 * 300.00004 * 18 16 8 47 47 H 1.09000 * 109.46803 * 209.99617 * 21 20 2 48 48 H 1.09000 * 109.47214 * 330.00411 * 21 20 2 49 49 H 0.97008 * 120.00053 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7735 1.4749 0.0013 6 6 4.6367 2.8157 0.0020 7 8 3.5302 3.3124 0.0024 8 6 5.8586 3.6977 0.0033 9 6 6.7946 3.5645 -1.2366 10 6 7.6208 4.8713 -1.2429 11 6 7.1082 5.6624 -0.0002 12 1 7.3159 6.7324 0.0056 13 6 7.6256 4.8405 1.2201 14 6 6.7810 3.5616 1.2229 15 8 6.8367 2.6385 1.9995 16 6 5.5946 5.2447 0.0046 17 6 4.8670 5.7053 -1.2600 18 6 4.8747 5.7044 1.2740 19 7 3.6337 -0.6577 0.0070 20 7 2.3017 -1.0909 0.0005 21 6 1.8500 -2.4846 0.0006 22 6 1.6957 -2.9627 -1.4203 23 1 1.9128 -2.2953 -2.2412 24 6 1.2784 -4.2524 -1.6722 25 7 1.1443 -4.6698 -2.9120 26 14 0.9036 -5.4070 -0.2522 27 1 -0.5277 -5.2816 0.1230 28 1 1.1869 -6.8054 -0.6634 29 1 1.7536 -5.0515 0.9123 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5134 33 1 1.9720 2.1210 0.0004 34 1 5.6584 1.0777 0.0013 35 1 7.4503 2.7007 -1.1268 36 1 6.2060 3.4824 -2.1503 37 1 7.4339 5.4352 -2.1568 38 1 8.6839 4.6521 -1.1427 39 1 8.6833 4.6066 1.0988 40 1 7.4621 5.3924 2.1457 41 1 3.9055 5.1968 -1.3315 42 1 4.7064 6.7824 -1.2149 43 1 5.4710 5.4647 -2.1349 44 1 5.4842 5.4632 2.1450 45 1 4.7138 6.7816 1.2306 46 1 3.9137 5.1959 1.3511 47 1 2.5845 -3.1045 0.5147 48 1 0.8912 -2.5558 0.5140 49 1 0.8503 -5.5771 -3.0893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346722070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:32 Heat of formation + Delta-G solvation = 16.399180 kcal Electronic energy + Delta-G solvation = -31182.462572 eV Core-core repulsion = 27111.638392 eV Total energy + Delta-G solvation = -4070.824180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.12164 -40.63848 -38.82650 -38.21805 -34.91757 -33.34102 -32.27539 -31.65031 -31.18338 -30.89553 -29.57754 -27.09392 -26.72865 -26.39496 -24.56026 -23.13584 -22.01942 -21.81336 -20.11516 -19.80225 -19.16155 -18.39246 -17.11809 -17.05688 -16.25729 -16.10157 -16.07956 -15.47721 -15.14642 -14.94294 -14.49677 -14.41154 -14.32162 -13.80236 -13.65745 -13.36456 -13.26294 -13.03934 -12.70621 -12.57191 -12.49371 -12.39606 -12.34039 -12.24589 -12.03230 -11.92774 -11.76682 -11.55455 -11.45406 -11.16527 -10.99068 -10.80682 -10.79268 -10.62370 -10.51277 -9.99712 -9.94217 -9.78754 -9.57139 -9.42231 -8.78496 -7.98877 -7.48335 -6.26353 -4.29517 1.52346 2.17989 2.67483 2.81493 3.15017 3.23539 3.24578 3.43326 3.63493 3.72642 3.85773 3.99706 4.11484 4.21867 4.48779 4.54281 4.58497 4.72592 4.81810 4.90719 5.01900 5.03111 5.06083 5.18776 5.33721 5.36492 5.47388 5.50696 5.52605 5.56486 5.64150 5.67799 5.69771 5.77957 5.83746 5.87609 6.02728 6.11536 6.16992 6.23441 6.37687 6.44831 6.55318 6.60899 6.74875 7.06751 7.28990 7.39408 7.56874 7.86267 8.19731 8.31504 8.58255 8.79074 9.28956 10.86091 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002565 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.453570 B =10912.955946 C =11162.592979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 C -0.287 4.287 4 C 0.269 3.731 5 N -0.622 5.622 6 C 0.555 3.445 7 O -0.504 6.504 8 C -0.150 4.150 9 C -0.104 4.104 10 C -0.123 4.123 11 C -0.089 4.089 12 H 0.118 0.882 13 C -0.170 4.170 14 C 0.379 3.621 15 O -0.424 6.424 16 C -0.030 4.030 17 C -0.142 4.142 18 C -0.149 4.149 19 N -0.316 5.316 20 N -0.316 5.316 21 C 0.231 3.769 22 C -0.541 4.541 23 H 0.081 0.919 24 C 0.079 3.921 25 N -0.887 5.887 26 Si 0.872 3.128 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.263 1.263 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.411 0.589 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.050 0.950 48 H 0.046 0.954 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.685 23.851 5.906 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.317 4.317 4 C 0.016 3.984 5 N -0.268 5.268 6 C 0.339 3.661 7 O -0.377 6.377 8 C -0.155 4.155 9 C -0.142 4.142 10 C -0.160 4.160 11 C -0.107 4.107 12 H 0.136 0.864 13 C -0.208 4.208 14 C 0.251 3.749 15 O -0.294 6.294 16 C -0.031 4.031 17 C -0.199 4.199 18 C -0.206 4.206 19 N -0.146 5.146 20 N -0.098 5.098 21 C 0.112 3.888 22 C -0.579 4.579 23 H 0.099 0.901 24 C -0.125 4.125 25 N -0.523 5.523 26 Si 0.698 3.302 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.188 1.188 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.178 0.822 34 H 0.246 0.754 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.562 22.355 6.216 25.924 hybrid contribution -0.103 -0.465 0.500 0.690 sum 11.459 21.890 6.716 25.604 Atomic orbital electron populations 1.20402 0.87812 1.04191 1.02457 1.21061 0.94916 0.86966 1.00688 1.21242 0.89609 0.99822 1.21062 1.18965 0.87193 0.89538 1.02721 1.42402 1.07646 1.04936 1.71805 1.19294 0.89483 0.81025 0.76274 1.90615 1.25841 1.73693 1.47530 1.23785 0.94646 0.98142 0.98898 1.22510 0.96870 0.99065 0.95779 1.22738 0.99417 0.95171 0.98676 1.23664 0.94260 0.99203 0.93571 0.86409 1.23336 1.00907 0.95567 1.00981 1.25490 0.81106 0.86266 0.81995 1.90496 1.63689 1.35006 1.40181 1.22278 0.94596 0.88709 0.97494 1.21803 1.01562 1.01270 0.95270 1.21875 1.01733 1.01849 0.95181 1.77281 0.99339 1.08666 1.29315 1.48524 1.01255 1.07019 1.53021 1.19999 0.95293 0.73763 0.99715 1.21178 1.47356 0.98997 0.90369 0.90098 1.24803 0.94479 0.97420 0.95793 1.69873 1.45675 1.18147 1.18652 0.86909 0.79452 0.80976 0.82876 1.19588 1.20487 1.18775 0.91083 0.90362 0.89828 0.82152 0.75435 0.90555 0.89303 0.90242 0.90730 0.87865 0.88016 0.90560 0.92078 0.92032 0.92997 0.91630 0.90440 0.93196 0.93648 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 3 C -0.29 -5.92 9.52 -39.83 -0.38 -6.30 16 4 C 0.27 5.64 8.11 -154.39 -1.25 4.39 16 5 N -0.62 -10.47 5.45 -11.13 -0.06 -10.53 16 6 C 0.55 8.25 6.85 -10.98 -0.08 8.17 16 7 O -0.50 -8.46 10.83 5.55 0.06 -8.40 16 8 C -0.15 -1.56 0.71 -151.70 -0.11 -1.67 16 9 C -0.10 -0.82 5.22 -24.33 -0.13 -0.95 16 10 C -0.12 -0.63 5.56 -24.29 -0.14 -0.76 16 11 C -0.09 -0.46 4.56 -85.26 -0.39 -0.85 16 12 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 13 C -0.17 -1.06 5.50 -25.01 -0.14 -1.20 16 14 C 0.38 3.96 5.97 -26.33 -0.16 3.81 16 15 O -0.42 -5.99 17.87 6.00 0.11 -5.88 16 16 C -0.03 -0.25 0.57 -150.20 -0.09 -0.33 16 17 C -0.14 -1.16 8.46 37.16 0.31 -0.84 16 18 C -0.15 -1.31 8.49 37.16 0.32 -0.99 16 19 N -0.32 -7.46 12.59 31.44 0.40 -7.07 16 20 N -0.32 -7.51 3.59 -58.32 -0.21 -7.72 16 21 C 0.23 5.67 4.88 -5.19 -0.03 5.64 16 22 C -0.54 -15.28 9.94 -34.44 -0.34 -15.62 16 23 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 24 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 25 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 26 Si 0.87 20.32 27.47 -169.99 -4.67 15.65 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 33 H 0.16 3.16 5.92 -52.49 -0.31 2.85 16 34 H 0.41 6.19 8.82 -40.82 -0.36 5.83 16 35 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 36 H 0.09 0.73 7.56 -51.93 -0.39 0.34 16 37 H 0.08 0.34 7.21 -51.93 -0.37 -0.03 16 38 H 0.07 0.30 7.85 -51.93 -0.41 -0.11 16 39 H 0.10 0.49 7.84 -51.93 -0.41 0.08 16 40 H 0.10 0.55 7.25 -51.93 -0.38 0.17 16 41 H 0.08 0.83 6.71 -51.93 -0.35 0.49 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.43 5.40 -51.93 -0.28 0.15 16 44 H 0.05 0.43 5.78 -51.93 -0.30 0.13 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.89 6.74 -51.93 -0.35 0.54 16 47 H 0.05 1.24 7.20 -51.93 -0.37 0.86 16 48 H 0.05 1.02 7.07 -51.93 -0.37 0.65 16 49 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -34.59 383.33 -7.89 -42.48 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.17 Total: 6.48 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.89 Total: -5.13 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.90 Total: -50.99 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.17 Total: -14.28 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.59 -7.89 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346722070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.879 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds