Wall clock time and date at job start Wed Apr 1 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35241 * 126.07160 * 2 1 4 4 C 1.40409 * 107.87202 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97655 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99686 * 0.02562 * 5 4 3 7 7 O 1.21289 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99521 * 179.97438 * 6 5 4 9 9 C 1.55920 * 115.85121 * 62.13116 * 8 6 5 10 10 C 1.54604 * 104.58771 * 159.95575 * 9 8 6 11 11 C 1.55980 * 104.46508 * 0.32678 * 10 9 8 12 12 H 1.08995 * 116.07655 * 199.12269 * 11 10 9 13 13 C 1.55967 * 104.30291 * 69.20570 * 11 10 9 14 14 C 1.53260 * 104.97375 * 288.98034 * 13 11 10 15 15 O 1.20758 * 127.85150 * 180.34472 * 14 13 11 16 16 C 1.56934 * 116.13655 * 180.02562 * 8 6 5 17 17 C 1.53002 * 112.08871 * 296.85698 * 16 8 6 18 18 C 1.52998 * 112.08828 * 63.54551 * 16 8 6 19 19 N 1.31227 * 108.04830 * 359.72240 * 4 3 2 20 20 N 1.34970 * 126.07182 * 179.97438 * 2 1 3 21 21 C 1.46506 * 125.97166 * 0.02562 * 20 2 1 22 22 C 1.50703 * 109.46877 * 90.00139 * 21 20 2 23 23 H 1.08005 * 119.99817 * 0.02562 * 22 21 20 24 24 C 1.37871 * 120.00081 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00254 * 180.02562 * 24 22 21 26 26 Si 1.86811 * 119.99850 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46778 * 89.99559 * 26 24 22 28 28 H 1.48493 * 109.46886 * 209.99446 * 26 24 22 29 29 H 1.48492 * 109.47026 * 329.99859 * 26 24 22 30 30 H 1.08998 * 109.46738 * 270.02517 * 1 2 3 31 31 H 1.08995 * 109.46791 * 30.02059 * 1 2 3 32 32 H 1.09000 * 109.47209 * 150.02544 * 1 2 3 33 33 H 1.07997 * 126.06215 * 0.02562 * 3 2 1 34 34 H 0.96997 * 120.00134 * 180.02562 * 5 4 3 35 35 H 1.09003 * 110.41188 * 278.73490 * 9 8 6 36 36 H 1.09000 * 110.41553 * 41.17536 * 9 8 6 37 37 H 1.08999 * 110.43590 * 241.57977 * 10 9 8 38 38 H 1.09003 * 110.54014 * 119.12899 * 10 9 8 39 39 H 1.08998 * 110.36108 * 48.46903 * 13 11 10 40 40 H 1.09001 * 110.35391 * 170.77129 * 13 11 10 41 41 H 1.09001 * 109.46530 * 60.00399 * 17 16 8 42 42 H 1.08995 * 109.47292 * 180.02562 * 17 16 8 43 43 H 1.08997 * 109.47743 * 300.00595 * 17 16 8 44 44 H 1.09006 * 109.47069 * 59.99947 * 18 16 8 45 45 H 1.09000 * 109.47112 * 179.97438 * 18 16 8 46 46 H 1.08996 * 109.47457 * 300.00004 * 18 16 8 47 47 H 1.09000 * 109.46803 * 209.99617 * 21 20 2 48 48 H 1.09000 * 109.47214 * 330.00411 * 21 20 2 49 49 H 0.97008 * 120.00053 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7735 1.4749 0.0013 6 6 4.6367 2.8157 0.0020 7 8 3.5302 3.3124 0.0024 8 6 5.8586 3.6977 0.0033 9 6 6.7946 3.5645 -1.2366 10 6 7.6208 4.8713 -1.2429 11 6 7.1082 5.6624 -0.0002 12 1 7.3159 6.7324 0.0056 13 6 7.6256 4.8405 1.2201 14 6 6.7810 3.5616 1.2229 15 8 6.8367 2.6385 1.9995 16 6 5.5946 5.2447 0.0046 17 6 4.8670 5.7053 -1.2600 18 6 4.8747 5.7044 1.2740 19 7 3.6337 -0.6577 0.0070 20 7 2.3017 -1.0909 0.0005 21 6 1.8500 -2.4846 0.0006 22 6 1.6957 -2.9627 -1.4203 23 1 1.9128 -2.2953 -2.2412 24 6 1.2784 -4.2524 -1.6722 25 7 1.1443 -4.6698 -2.9120 26 14 0.9036 -5.4070 -0.2522 27 1 -0.5277 -5.2816 0.1230 28 1 1.1869 -6.8054 -0.6634 29 1 1.7536 -5.0515 0.9123 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5134 33 1 1.9720 2.1210 0.0004 34 1 5.6584 1.0777 0.0013 35 1 7.4503 2.7007 -1.1268 36 1 6.2060 3.4824 -2.1503 37 1 7.4339 5.4352 -2.1568 38 1 8.6839 4.6521 -1.1427 39 1 8.6833 4.6066 1.0988 40 1 7.4621 5.3924 2.1457 41 1 3.9055 5.1968 -1.3315 42 1 4.7064 6.7824 -1.2149 43 1 5.4710 5.4647 -2.1349 44 1 5.4842 5.4632 2.1450 45 1 4.7138 6.7816 1.2306 46 1 3.9137 5.1959 1.3511 47 1 2.5845 -3.1045 0.5147 48 1 0.8912 -2.5558 0.5140 49 1 0.8503 -5.5771 -3.0893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346722070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:16 Heat of formation + Delta-G solvation = -6.329131 kcal Electronic energy + Delta-G solvation = -31183.448145 eV Core-core repulsion = 27111.638392 eV Total energy + Delta-G solvation = -4071.809753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 15.45 seconds Orbital eigenvalues (eV) -42.94201 -42.21283 -40.08264 -39.07483 -36.42668 -35.29728 -33.42253 -32.88658 -32.78704 -31.62306 -30.43677 -28.90858 -27.94823 -27.38629 -25.34204 -24.68086 -23.47597 -22.45226 -21.50224 -21.31634 -19.86633 -19.56510 -19.26763 -18.04413 -17.74462 -17.13388 -16.96144 -16.73919 -16.49296 -16.26311 -15.96099 -15.40207 -15.29314 -15.12884 -14.97725 -14.53105 -14.38141 -14.09552 -13.94985 -13.86289 -13.73424 -13.70297 -13.38421 -13.24276 -13.13522 -12.95992 -12.83270 -12.59879 -12.58132 -12.32722 -12.27930 -11.98723 -11.87464 -11.64738 -11.62612 -11.46817 -11.29749 -11.25784 -10.92469 -10.82763 -10.37666 -9.67237 -9.18858 -8.43670 -6.55147 0.70152 0.80293 1.20798 1.28728 1.32301 1.37425 1.45945 2.06620 2.21359 2.24011 2.75829 2.88314 3.12213 3.33875 3.43880 3.56896 3.82846 3.92021 4.00108 4.01923 4.15750 4.21629 4.37566 4.39102 4.42254 4.44635 4.49324 4.68882 4.72272 4.72596 4.77726 4.86632 4.87043 4.90811 4.91547 5.04104 5.04261 5.05338 5.13303 5.16507 5.18215 5.19309 5.22982 5.36009 5.46351 5.55600 5.79903 5.94766 6.11489 6.29301 6.32323 6.48074 6.86813 6.96121 7.08835 8.73008 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002565 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.453570 B =10912.955946 C =11162.592979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.092 3.908 3 C -0.298 4.298 4 C 0.272 3.728 5 N -0.624 5.624 6 C 0.548 3.452 7 O -0.526 6.526 8 C -0.163 4.163 9 C -0.107 4.107 10 C -0.116 4.116 11 C -0.065 4.065 12 H 0.156 0.844 13 C -0.162 4.162 14 C 0.375 3.625 15 O -0.472 6.472 16 C -0.032 4.032 17 C -0.140 4.140 18 C -0.149 4.149 19 N -0.359 5.359 20 N -0.341 5.341 21 C 0.241 3.759 22 C -0.552 4.552 23 H 0.024 0.976 24 C 0.023 3.977 25 N -0.936 5.936 26 Si 0.950 3.050 27 H -0.248 1.248 28 H -0.276 1.276 29 H -0.248 1.248 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.169 0.831 34 H 0.416 0.584 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.040 0.960 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 26.312 7.387 30.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.329 4.329 4 C 0.018 3.982 5 N -0.271 5.271 6 C 0.335 3.665 7 O -0.400 6.400 8 C -0.167 4.167 9 C -0.145 4.145 10 C -0.153 4.153 11 C -0.083 4.083 12 H 0.173 0.827 13 C -0.199 4.199 14 C 0.251 3.749 15 O -0.345 6.345 16 C -0.033 4.033 17 C -0.196 4.196 18 C -0.206 4.206 19 N -0.189 5.189 20 N -0.123 5.123 21 C 0.122 3.878 22 C -0.590 4.590 23 H 0.042 0.958 24 C -0.177 4.177 25 N -0.574 5.574 26 Si 0.771 3.229 27 H -0.172 1.172 28 H -0.202 1.202 29 H -0.171 1.171 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.186 0.814 34 H 0.252 0.748 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.866 24.876 7.685 29.042 hybrid contribution -0.509 -1.099 -0.071 1.214 sum 12.357 23.777 7.613 27.857 Atomic orbital electron populations 1.20556 0.84840 1.04602 1.04553 1.21807 0.96844 0.86228 0.98924 1.21439 0.89638 1.00137 1.21648 1.19377 0.88823 0.89316 1.00654 1.42696 1.06785 1.05481 1.72182 1.20315 0.91055 0.80437 0.74681 1.90584 1.27419 1.73836 1.48144 1.23979 0.93179 0.98757 1.00785 1.22619 0.96606 1.01309 0.93927 1.22790 0.99927 0.93218 0.99413 1.23763 0.90688 1.00996 0.92852 0.82682 1.23422 1.01270 0.92888 1.02301 1.26160 0.80989 0.87055 0.80674 1.90479 1.65214 1.37164 1.41680 1.22411 0.97119 0.86668 0.97103 1.21777 0.99902 1.02123 0.95846 1.21866 0.99999 1.02951 0.95781 1.77185 0.99971 1.10088 1.31687 1.48463 1.01757 1.07192 1.54935 1.19794 0.96370 0.74479 0.97199 1.21223 1.47928 0.98820 0.90996 0.95800 1.25817 0.93663 0.99112 0.99080 1.70029 1.46776 1.19062 1.21531 0.85686 0.80563 0.77757 0.78889 1.17183 1.20162 1.17149 0.87991 0.88129 0.91141 0.81412 0.74794 0.90583 0.90221 0.88667 0.88570 0.85306 0.86445 0.94245 0.89982 0.90821 0.92653 0.89241 0.94128 0.93507 0.90850 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.24 0.70 -2.19 16 2 C 0.09 3.97 6.92 41.38 0.29 4.26 16 3 C -0.30 -12.80 9.52 22.11 0.21 -12.59 16 4 C 0.27 12.04 8.11 133.32 1.08 13.13 16 5 N -0.62 -22.29 5.45 -307.51 -1.68 -23.96 16 6 C 0.55 17.07 6.85 87.66 0.60 17.67 16 7 O -0.53 -18.61 10.83 -3.06 -0.03 -18.64 16 8 C -0.16 -3.32 0.71 -50.36 -0.04 -3.35 16 9 C -0.11 -1.54 5.22 32.15 0.17 -1.37 16 10 C -0.12 -0.71 5.56 32.17 0.18 -0.53 16 11 C -0.07 -0.38 4.56 -7.32 -0.03 -0.41 16 12 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 13 C -0.16 -1.40 5.50 31.71 0.17 -1.23 16 14 C 0.38 7.50 5.97 30.86 0.18 7.68 16 15 O -0.47 -13.59 17.87 -1.44 -0.03 -13.61 16 16 C -0.03 -0.46 0.57 -49.39 -0.03 -0.49 16 17 C -0.14 -2.05 8.46 71.98 0.61 -1.44 16 18 C -0.15 -2.40 8.49 71.98 0.61 -1.79 16 19 N -0.36 -17.85 12.59 -54.45 -0.69 -18.53 16 20 N -0.34 -16.78 3.59 -338.43 -1.22 -18.00 16 21 C 0.24 12.01 4.88 85.63 0.42 12.43 16 22 C -0.55 -32.51 9.94 25.60 0.25 -32.25 16 23 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 24 C 0.02 1.33 5.47 84.65 0.46 1.79 16 25 N -0.94 -57.66 13.96 21.44 0.30 -57.36 16 26 Si 0.95 41.73 27.47 68.60 1.88 43.62 16 27 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 29 H -0.25 -10.22 6.54 99.48 0.65 -9.57 16 30 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.07 2.53 7.71 -2.39 -0.02 2.51 16 33 H 0.17 6.87 5.92 -2.91 -0.02 6.85 16 34 H 0.42 13.49 8.82 -92.71 -0.82 12.67 16 35 H 0.08 1.08 8.05 -2.39 -0.02 1.06 16 36 H 0.08 1.28 7.56 -2.39 -0.02 1.27 16 37 H 0.09 0.37 7.21 -2.39 -0.02 0.35 16 38 H 0.10 0.28 7.85 -2.39 -0.02 0.26 16 39 H 0.13 0.59 7.84 -2.39 -0.02 0.57 16 40 H 0.12 0.77 7.25 -2.39 -0.02 0.75 16 41 H 0.04 0.88 6.71 -2.39 -0.02 0.86 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.88 5.40 -2.39 -0.01 0.86 16 44 H 0.05 0.83 5.78 -2.38 -0.01 0.82 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.04 0.95 6.74 -2.39 -0.02 0.94 16 47 H 0.05 2.34 7.20 -2.39 -0.02 2.32 16 48 H 0.07 3.22 7.07 -2.39 -0.02 3.20 16 49 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -82.84 383.33 4.51 -78.33 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.12 Total: 28.85 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.85 Total: -0.68 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -3.28 Total: -117.86 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.06 Total: -32.25 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.62 kcal Total: -82.84 4.51 -78.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346722070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.999 kcal (2) G-P(sol) polarization free energy of solvation -82.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.45 seconds