Wall clock time and date at job start Wed Apr 1 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31942 * 119.40949 * 2 1 4 4 C 1.32172 * 121.80474 * 180.28749 * 3 2 1 5 5 O 1.35485 * 119.79657 * 179.70508 * 4 3 2 6 6 C 1.40349 * 120.40041 * 359.72664 * 4 3 2 7 7 C 1.43198 * 120.60044 * 179.97438 * 6 4 3 8 8 N 4.75878 * 139.47163 * 0.33017 * 3 1 2 9 9 C 1.39947 * 118.79973 * 359.97438 * 6 4 3 10 10 C 1.50699 * 120.82835 * 180.02562 * 9 6 4 11 11 C 1.38282 * 119.40207 * 179.74890 * 2 1 3 12 12 C 1.50703 * 120.26787 * 0.02562 * 11 2 1 13 13 C 1.53000 * 109.46912 * 269.72291 * 12 11 2 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 O 1.21273 * 120.00140 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99767 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00054 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47415 * 300.00058 * 18 17 16 20 20 C 1.52996 * 109.47165 * 60.00080 * 18 17 16 21 21 C 1.50703 * 109.47084 * 180.02562 * 18 17 16 22 22 H 1.07995 * 120.00280 * 0.02562 * 21 18 17 23 23 C 1.37880 * 119.99788 * 180.02562 * 21 18 17 24 24 N 1.31511 * 120.00327 * 0.02562 * 23 21 18 25 25 Si 1.86806 * 119.99600 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47070 * 90.00336 * 25 23 21 27 27 H 1.48502 * 109.46496 * 209.99700 * 25 23 21 28 28 H 1.48500 * 109.47072 * 329.99934 * 25 23 21 29 29 H 1.09002 * 109.47038 * 270.25192 * 1 2 3 30 30 H 1.09006 * 109.46461 * 30.24841 * 1 2 3 31 31 H 1.08991 * 109.47471 * 150.24753 * 1 2 3 32 32 H 0.96701 * 113.99367 * 270.01880 * 5 4 3 33 33 H 1.08993 * 109.47695 * 269.98044 * 10 9 6 34 34 H 1.09005 * 109.46900 * 29.98580 * 10 9 6 35 35 H 1.09006 * 109.46915 * 149.97505 * 10 9 6 36 36 H 1.09002 * 109.47152 * 149.72063 * 12 11 2 37 37 H 1.09001 * 109.46980 * 29.72163 * 12 11 2 38 38 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 40 40 H 0.97005 * 119.99680 * 359.97438 * 16 14 13 41 41 H 1.08998 * 109.47245 * 300.00495 * 17 16 14 42 42 H 1.09002 * 109.47021 * 59.99873 * 17 16 14 43 43 H 1.09000 * 109.46986 * 59.99882 * 19 18 17 44 44 H 1.08996 * 109.47407 * 179.97438 * 19 18 17 45 45 H 1.09002 * 109.47070 * 300.00053 * 19 18 17 46 46 H 1.09001 * 109.46997 * 59.99740 * 20 18 17 47 47 H 1.09000 * 109.47380 * 179.97438 * 20 18 17 48 48 H 1.08999 * 109.47631 * 300.00497 * 20 18 17 49 49 H 0.97000 * 120.00354 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1549 1.1494 0.0000 4 6 3.4754 1.2046 -0.0056 5 8 4.0989 2.4075 -0.0114 6 6 4.2356 0.0249 -0.0061 7 6 5.6665 0.0797 -0.0127 8 7 6.8017 0.1232 -0.0178 9 6 3.5699 -1.2061 0.0001 10 6 4.3408 -2.5010 0.0004 11 6 2.1858 -1.2047 0.0053 12 6 1.4248 -2.5055 0.0104 13 6 1.1728 -2.9431 1.4546 14 6 0.4123 -4.2442 1.4597 15 8 0.1021 -4.7694 0.4115 16 7 0.0760 -4.8237 2.6292 17 6 -0.6637 -6.0881 2.6342 18 6 -0.9156 -6.5259 4.0784 19 6 0.4229 -6.7153 4.7949 20 6 -1.7336 -5.4537 4.8010 21 6 -1.6761 -7.8270 4.0835 22 1 -1.9517 -8.2951 3.1501 23 6 -2.0199 -8.4198 5.2800 24 7 -1.6848 -7.8496 6.4166 25 14 -2.9619 -10.0329 5.2862 26 1 -2.0025 -11.1663 5.2857 27 1 -3.8121 -10.1048 6.5016 28 1 -3.8198 -10.1099 4.0766 29 1 -0.3633 0.0045 1.0277 30 1 -0.3632 0.8878 -0.5177 31 1 -0.3634 -0.8921 -0.5099 32 1 4.2760 2.7543 -0.8966 33 1 4.5222 -2.8163 -1.0270 34 1 5.2937 -2.3564 0.5097 35 1 3.7643 -3.2670 0.5192 36 1 2.0076 -3.2694 -0.5044 37 1 0.4712 -2.3705 -0.5001 38 1 2.1264 -3.0781 1.9651 39 1 0.5901 -2.1793 1.9694 40 1 0.3239 -4.4034 3.4676 41 1 -1.6171 -5.9534 2.1234 42 1 -0.0807 -6.8521 2.1198 43 1 0.9733 -5.7744 4.7912 44 1 0.2434 -7.0267 5.8239 45 1 1.0057 -7.4792 4.2801 46 1 -2.6872 -5.3187 4.2906 47 1 -1.9135 -5.7657 5.8298 48 1 -1.1833 -4.5128 4.7973 49 1 -1.9264 -8.2668 7.2583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361855064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:14 Heat of formation + Delta-G solvation = -55.131488 kcal Electronic energy + Delta-G solvation = -29599.611727 eV Core-core repulsion = 25525.685745 eV Total energy + Delta-G solvation = -4073.925982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.09873 -40.64712 -38.81288 -38.05634 -37.86471 -35.70284 -34.90136 -34.70679 -32.74357 -31.38926 -29.70648 -28.77269 -27.51357 -27.43352 -26.86719 -25.12474 -23.63720 -22.41670 -21.23664 -20.52938 -19.80388 -19.35652 -18.57699 -18.22350 -17.57510 -16.87933 -16.63919 -16.51891 -16.36667 -15.55361 -15.14091 -15.06320 -14.80205 -14.74751 -14.66527 -14.43651 -14.27181 -14.11258 -14.08927 -13.88109 -13.71249 -13.45992 -13.30747 -13.13948 -13.06090 -13.01527 -12.79354 -12.64750 -12.60850 -12.57168 -12.52663 -12.20297 -12.11068 -11.76928 -11.43128 -11.20991 -10.79699 -10.65967 -10.59604 -10.51909 -10.36717 -9.81398 -9.73828 -7.99727 -6.14967 -0.61226 -0.05696 1.43520 1.47055 1.47150 1.54538 1.76329 1.84621 2.33405 2.39041 2.50918 2.62859 2.73620 3.24039 3.37672 3.46663 3.67895 3.94884 3.97649 4.16395 4.22927 4.36465 4.42151 4.49495 4.55516 4.59354 4.61362 4.74212 4.78429 4.81094 4.86164 4.98737 5.00469 5.08159 5.11323 5.15785 5.18335 5.21848 5.24783 5.26815 5.44334 5.56127 5.69950 5.70691 5.72136 6.20629 6.27274 6.28409 6.45985 6.47475 6.75658 6.80670 6.90382 7.46539 7.52831 8.98694 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.001973 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.422439 B =14191.493216 C =14602.916119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.194 3.806 3 N -0.520 5.520 4 C 0.369 3.631 5 O -0.487 6.487 6 C -0.120 4.120 7 C 0.286 3.714 8 N -0.447 5.447 9 C 0.038 3.962 10 C -0.133 4.133 11 C -0.141 4.141 12 C -0.058 4.058 13 C -0.130 4.130 14 C 0.505 3.495 15 O -0.589 6.589 16 N -0.715 5.715 17 C 0.149 3.851 18 C 0.049 3.951 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.526 4.526 22 H 0.044 0.956 23 C 0.027 3.973 24 N -0.899 5.899 25 Si 0.942 3.058 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.426 0.574 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.408 0.592 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.059 0.941 48 H 0.040 0.960 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 18.105 -12.511 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.056 3.944 3 N -0.240 5.240 4 C 0.186 3.814 5 O -0.298 6.298 6 C -0.127 4.127 7 C -0.029 4.029 8 N -0.123 5.123 9 C 0.029 3.971 10 C -0.189 4.189 11 C -0.143 4.143 12 C -0.096 4.096 13 C -0.169 4.169 14 C 0.293 3.707 15 O -0.470 6.470 16 N -0.366 5.366 17 C 0.025 3.975 18 C 0.049 3.951 19 C -0.179 4.179 20 C -0.179 4.179 21 C -0.564 4.564 22 H 0.062 0.938 23 C -0.173 4.173 24 N -0.538 5.538 25 Si 0.769 3.231 26 H -0.207 1.207 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.289 0.711 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.245 0.755 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.078 0.922 48 H 0.059 0.941 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.195 18.538 -12.456 24.152 hybrid contribution -0.267 -1.470 0.171 1.503 sum 8.928 17.068 -12.285 22.846 Atomic orbital electron populations 1.21097 0.86354 1.05163 1.05024 1.21497 0.98093 0.85987 0.88774 1.67237 1.08605 1.30815 1.17317 1.19074 0.86540 0.84346 0.91425 1.84683 1.76582 1.32443 1.36092 1.16902 0.85079 0.94723 1.15995 1.25194 0.92060 0.92830 0.92861 1.81284 1.12685 1.08187 1.10170 1.20314 0.93312 0.94007 0.89470 1.21119 0.99833 0.93030 1.04919 1.20417 0.92471 0.96719 1.04679 1.20295 1.01221 0.92137 0.95931 1.21690 1.02225 0.93662 0.99357 1.21280 0.79244 0.87230 0.82951 1.90669 1.56941 1.66653 1.32770 1.46199 1.56875 1.24383 1.09147 1.21191 0.93822 0.84076 0.98448 1.18362 0.93499 0.93802 0.89450 1.21675 0.96100 0.97895 1.02249 1.21667 0.97747 0.96227 1.02235 1.21298 1.35921 1.07098 0.92118 0.93751 1.25442 0.96564 0.99753 0.95512 1.69906 1.47090 1.39501 0.97306 0.85811 0.78868 0.81119 0.77307 1.20652 1.21034 1.20007 0.88208 0.89498 0.88334 0.71141 0.88053 0.91136 0.88429 0.89553 0.88681 0.86928 0.86428 0.75463 0.94344 0.94504 0.94165 0.92218 0.96394 0.96264 0.92231 0.94106 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.75 71.23 0.69 -0.47 16 2 C 0.19 2.65 6.78 42.55 0.29 2.94 16 3 N -0.52 -8.74 10.28 -296.02 -3.04 -11.79 16 4 C 0.37 5.96 7.76 85.16 0.66 6.62 16 5 O -0.49 -6.95 13.00 -87.85 -1.14 -8.09 16 6 C -0.12 -1.87 5.76 -21.11 -0.12 -1.99 16 7 C 0.29 5.37 13.51 88.33 1.19 6.56 16 8 N -0.45 -10.32 18.54 19.00 0.35 -9.97 16 9 C 0.04 0.51 5.95 -19.41 -0.12 0.40 16 10 C -0.13 -1.49 8.89 71.24 0.63 -0.85 16 11 C -0.14 -1.80 5.14 -19.81 -0.10 -1.90 16 12 C -0.06 -0.79 3.55 29.85 0.11 -0.68 16 13 C -0.13 -1.92 5.57 29.85 0.17 -1.75 16 14 C 0.50 13.13 7.83 87.66 0.69 13.82 16 15 O -0.59 -20.07 15.98 -3.01 -0.05 -20.12 16 16 N -0.71 -20.76 4.96 -463.07 -2.30 -23.05 16 17 C 0.15 5.78 4.50 86.38 0.39 6.17 16 18 C 0.05 2.16 0.50 -52.93 -0.03 2.13 16 19 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 20 C -0.12 -5.05 8.08 71.98 0.58 -4.47 16 21 C -0.53 -26.84 8.01 25.60 0.21 -26.63 16 22 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 23 C 0.03 1.38 5.15 84.66 0.44 1.82 16 24 N -0.90 -46.91 9.35 21.45 0.20 -46.71 16 25 Si 0.94 41.71 29.54 68.60 2.03 43.73 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.10 0.82 5.90 -2.39 -0.01 0.81 16 32 H 0.43 1.89 9.06 -74.06 -0.67 1.22 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.87 7.19 -2.38 -0.02 0.85 16 35 H 0.10 0.99 6.05 -2.38 -0.01 0.97 16 36 H 0.09 1.26 6.75 -2.39 -0.02 1.25 16 37 H 0.09 1.31 5.87 -2.39 -0.01 1.30 16 38 H 0.11 1.29 7.47 -2.39 -0.02 1.27 16 39 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.41 10.13 6.16 -92.70 -0.57 9.56 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 44 H 0.06 2.85 6.07 -2.39 -0.01 2.83 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 2.83 6.07 -2.39 -0.01 2.81 16 48 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 49 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -67.06 399.30 2.08 -64.98 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.23 Total: 13.83 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 6.26 Total: -2.82 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -4.79 Total: -91.52 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.19 Total: -28.21 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -67.06 2.08 -64.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361855064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.845 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds