Wall clock time and date at job start Wed Apr 1 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.46143 * 2 1 4 4 C 1.36935 * 120.00121 * 59.99448 * 3 2 1 5 5 H 1.07997 * 120.00139 * 0.02562 * 4 3 2 6 6 C 1.38816 * 120.00401 * 180.02562 * 4 3 2 7 7 N 1.31624 * 119.99569 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00172 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.46685 * 269.99637 * 8 6 4 10 10 H 1.48494 * 109.47357 * 29.99716 * 8 6 4 11 11 H 1.48502 * 109.47120 * 150.00435 * 8 6 4 12 12 C 1.53044 * 109.45758 * 119.97296 * 2 1 3 13 13 C 1.53166 * 109.32485 * 181.38462 * 12 2 1 14 14 N 1.46920 * 108.77277 * 305.35644 * 13 12 2 15 15 C 1.34771 * 120.63299 * 233.59057 * 14 13 12 16 16 O 1.21281 * 120.00317 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99810 * 0.02562 * 15 14 13 18 18 N 1.46500 * 109.46974 * 180.02562 * 17 15 14 19 19 C 1.34777 * 119.99699 * 179.97438 * 18 17 15 20 20 O 1.21548 * 120.00610 * 359.97438 * 19 18 17 21 21 C 1.47849 * 119.99856 * 179.97438 * 19 18 17 22 22 C 1.39577 * 120.14503 * 359.72079 * 21 19 18 23 23 C 1.37956 * 119.85104 * 179.78787 * 22 21 19 24 24 C 1.38353 * 120.14628 * 0.49379 * 23 22 21 25 25 C 1.38356 * 120.29265 * 359.73801 * 24 23 22 26 26 C 1.37956 * 120.14677 * 0.02788 * 25 24 23 27 27 C 1.46932 * 118.73957 * 53.60099 * 14 13 12 28 28 C 1.53045 * 109.45779 * 240.02325 * 2 1 3 29 29 H 1.08997 * 109.46965 * 60.00526 * 1 2 3 30 30 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46997 * 299.99987 * 1 2 3 32 32 H 0.97000 * 120.00577 * 240.00047 * 3 2 1 33 33 H 0.97001 * 119.99885 * 359.97438 * 7 6 4 34 34 H 1.09000 * 109.49970 * 301.32081 * 12 2 1 35 35 H 1.09001 * 109.50257 * 61.42230 * 12 2 1 36 36 H 1.08998 * 109.59021 * 185.56728 * 13 12 2 37 37 H 1.09004 * 109.70642 * 65.21502 * 13 12 2 38 38 H 1.08997 * 109.46649 * 299.99771 * 17 15 14 39 39 H 1.08996 * 109.47095 * 60.00220 * 17 15 14 40 40 H 0.96997 * 119.99980 * 359.97438 * 18 17 15 41 41 H 1.07996 * 120.07008 * 0.02562 * 22 21 19 42 42 H 1.08007 * 119.92699 * 180.22941 * 23 22 21 43 43 H 1.08002 * 119.85482 * 179.72038 * 24 23 22 44 44 H 1.08000 * 119.92770 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.07630 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.58846 * 186.60846 * 27 14 13 47 47 H 1.09005 * 109.69444 * 66.25535 * 27 14 13 48 48 H 1.08995 * 109.50050 * 298.57539 * 28 2 1 49 49 H 1.08996 * 109.49593 * 58.64892 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6871 2.2244 1.0269 5 1 1.0665 1.8710 1.8371 6 6 2.1491 3.5334 1.0267 7 7 2.9050 3.9642 0.0391 8 14 1.6981 4.6833 2.4280 9 1 0.4347 5.3917 2.0999 10 1 1.5153 3.8970 3.6744 11 1 2.7854 5.6756 2.6236 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6890 1.2645 14 7 4.0677 -1.2493 0.0004 15 6 4.9616 -2.2579 0.0006 16 8 5.3643 -2.7115 -1.0497 17 6 5.4610 -2.8220 1.3058 18 7 6.4169 -3.8994 1.0382 19 6 6.9979 -4.5545 2.0628 20 8 6.7292 -4.2512 3.2087 21 6 7.9623 -5.6422 1.7928 22 6 8.2687 -5.9970 0.4781 23 6 9.1727 -7.0099 0.2332 24 6 9.7674 -7.6804 1.2872 25 6 9.4643 -7.3370 2.5927 26 6 8.5657 -6.3228 2.8515 27 6 3.5714 -0.6891 -1.2640 28 6 2.0398 -0.7210 -1.2500 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.5757 1.6986 -0.7275 33 1 3.1395 3.3670 -0.6884 34 1 1.6574 -0.2208 2.1399 35 1 1.6976 -1.7558 1.2383 36 1 3.9412 -1.2849 2.0988 37 1 3.9163 0.3397 1.3689 38 1 5.9521 -2.0346 1.8776 39 1 4.6201 -3.2154 1.8769 40 1 6.6317 -4.1412 0.1238 41 1 7.8021 -5.4771 -0.3454 42 1 9.4136 -7.2829 -0.7837 43 1 10.4710 -8.4757 1.0900 44 1 9.9323 -7.8641 3.4110 45 1 8.3297 -6.0559 3.8711 46 1 3.9417 -1.2851 -2.0980 47 1 3.9145 0.3401 -1.3696 48 1 1.6977 -1.7558 -1.2382 49 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484926423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:08 Heat of formation + Delta-G solvation = -28.057253 kcal Electronic energy + Delta-G solvation = -30125.285481 eV Core-core repulsion = 26052.533525 eV Total energy + Delta-G solvation = -4072.751955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.69250 -40.00248 -38.56451 -37.94088 -34.85905 -34.67323 -32.70016 -31.81177 -31.30023 -30.97124 -28.99843 -28.35232 -27.24259 -24.17193 -23.71316 -23.06144 -22.90886 -22.48328 -20.72397 -20.01344 -18.86533 -18.11770 -17.08172 -17.03524 -16.45657 -16.19772 -16.07166 -15.62272 -15.16826 -14.89998 -14.82327 -14.64836 -14.20559 -13.97786 -13.70773 -13.65858 -13.61682 -13.57794 -13.09642 -12.94517 -12.66167 -12.44422 -12.25142 -12.04598 -11.65989 -11.47081 -11.45784 -11.34228 -10.88753 -10.82326 -10.61519 -10.35686 -10.24593 -10.03979 -9.97152 -9.77435 -9.49958 -9.37741 -9.24468 -9.14014 -8.99580 -8.43793 -7.08425 -6.12906 -3.14154 0.50130 0.98595 2.51918 2.61344 2.64021 3.26113 3.48886 3.52352 3.54605 3.66403 4.33208 4.40041 4.47837 4.55695 4.62071 4.76205 4.98958 5.06745 5.11088 5.15114 5.18627 5.22505 5.25545 5.42363 5.43405 5.48981 5.59567 5.62064 5.64215 5.87752 5.91059 5.93280 5.99535 6.01021 6.04696 6.06150 6.10683 6.25918 6.30155 6.37562 6.45699 6.49005 6.56755 6.70411 6.87459 6.94529 7.24931 7.48568 7.78071 7.93853 8.08596 8.71427 9.17174 10.03902 10.19219 11.34685 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.002194 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.317222 B =12759.139070 C =13410.855773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.202 3.798 3 N -0.728 5.728 4 C -0.324 4.324 5 H 0.066 0.934 6 C -0.044 4.044 7 N -0.944 5.944 8 Si 1.078 2.922 9 H -0.297 1.297 10 H -0.295 1.295 11 H -0.289 1.289 12 C -0.134 4.134 13 C 0.111 3.889 14 N -0.591 5.591 15 C 0.508 3.492 16 O -0.555 6.555 17 C 0.101 3.899 18 N -0.712 5.712 19 C 0.559 3.441 20 O -0.537 6.537 21 C -0.133 4.133 22 C -0.085 4.085 23 C -0.128 4.128 24 C -0.095 4.095 25 C -0.130 4.130 26 C -0.059 4.059 27 C 0.117 3.883 28 C -0.131 4.131 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.411 0.589 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.137 0.863 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 -22.118 0.831 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.371 5.371 4 C -0.455 4.455 5 H 0.084 0.916 6 C -0.242 4.242 7 N -0.589 5.589 8 Si 0.909 3.091 9 H -0.225 1.225 10 H -0.222 1.222 11 H -0.215 1.215 12 C -0.174 4.174 13 C -0.011 4.011 14 N -0.323 5.323 15 C 0.296 3.704 16 O -0.435 6.435 17 C -0.026 4.026 18 N -0.368 5.368 19 C 0.347 3.653 20 O -0.415 6.415 21 C -0.136 4.136 22 C -0.103 4.103 23 C -0.146 4.146 24 C -0.114 4.114 25 C -0.148 4.148 26 C -0.078 4.078 27 C -0.005 4.005 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.200 0.800 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.250 0.750 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.155 0.845 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.139 -20.589 1.869 22.604 hybrid contribution -0.157 -1.403 -1.175 1.837 sum 8.981 -21.993 0.694 23.766 Atomic orbital electron populations 1.22192 0.97385 0.99033 1.02203 1.19470 0.92278 0.85755 0.91429 1.42513 1.61181 1.06648 1.26799 1.19935 1.29649 0.94415 1.01463 0.91640 1.25664 0.99049 0.95991 1.03497 1.70866 1.38900 1.37960 1.11210 0.83252 0.75859 0.75714 0.74255 1.22485 1.22177 1.21529 1.22287 0.94274 0.99284 1.01568 1.21851 0.95589 1.00433 0.83275 1.48053 1.41656 1.33723 1.08842 1.20349 0.79481 0.79978 0.90626 1.90640 1.58844 1.60869 1.33138 1.21141 0.94276 0.91451 0.95724 1.45637 1.44434 1.36083 1.10609 1.18258 0.80579 0.81755 0.84723 1.90789 1.63040 1.66658 1.20978 1.19910 1.00478 0.98748 0.94445 1.21421 0.96670 0.96595 0.95646 1.21141 0.97319 0.96450 0.99654 1.21404 0.98430 0.98759 0.92779 1.21181 0.98559 0.97885 0.97141 1.21313 0.93755 0.93445 0.99323 1.21584 0.94222 0.99255 0.85456 1.22112 0.94717 1.00637 0.99450 0.93241 0.94524 0.92393 0.79954 0.93427 0.90293 0.93158 0.90982 0.88916 0.88044 0.88137 0.75032 0.85309 0.85261 0.85537 0.85240 0.84521 0.89648 0.90735 0.91717 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.44 37.16 0.31 -2.24 16 2 C 0.20 3.56 0.74 -131.78 -0.10 3.46 16 3 N -0.73 -15.95 4.14 -47.19 -0.20 -16.14 16 4 C -0.32 -8.14 8.68 -15.06 -0.13 -8.27 16 5 H 0.07 1.64 6.70 -52.49 -0.35 1.29 16 6 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 7 N -0.94 -27.69 13.70 55.49 0.76 -26.93 16 8 Si 1.08 24.95 29.92 -169.99 -5.09 19.86 16 9 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C -0.13 -2.15 4.70 -26.62 -0.13 -2.28 16 13 C 0.11 1.70 6.08 -3.73 -0.02 1.68 16 14 N -0.59 -8.95 2.97 -172.78 -0.51 -9.46 16 15 C 0.51 7.44 7.77 -10.99 -0.09 7.36 16 16 O -0.56 -9.16 15.08 5.56 0.08 -9.07 16 17 C 0.10 1.28 4.50 -5.19 -0.02 1.25 16 18 N -0.71 -8.61 5.48 -62.43 -0.34 -8.95 16 19 C 0.56 7.20 7.77 -12.33 -0.10 7.11 16 20 O -0.54 -8.48 16.35 5.32 0.09 -8.39 16 21 C -0.13 -1.41 5.87 -104.97 -0.62 -2.02 16 22 C -0.08 -0.73 9.54 -39.19 -0.37 -1.11 16 23 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 24 C -0.10 -0.62 10.04 -39.50 -0.40 -1.02 16 25 C -0.13 -0.94 10.03 -39.64 -0.40 -1.34 16 26 C -0.06 -0.57 9.60 -39.19 -0.38 -0.94 16 27 C 0.12 1.83 6.16 -3.71 -0.02 1.81 16 28 C -0.13 -2.00 4.96 -26.61 -0.13 -2.13 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.08 7.27 -51.93 -0.38 0.70 16 32 H 0.37 8.51 5.30 -40.82 -0.22 8.30 16 33 H 0.25 7.33 6.77 -40.82 -0.28 7.05 16 34 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.93 5.93 -51.93 -0.31 0.62 16 37 H 0.09 1.72 7.75 -51.93 -0.40 1.32 16 38 H 0.10 1.27 7.94 -51.93 -0.41 0.86 16 39 H 0.10 1.20 7.69 -51.93 -0.40 0.80 16 40 H 0.41 4.60 5.47 -40.82 -0.22 4.38 16 41 H 0.13 0.97 6.41 -52.49 -0.34 0.63 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.14 1.31 7.65 -52.49 -0.40 0.90 16 46 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 47 H 0.07 1.29 6.94 -51.93 -0.36 0.93 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -31.71 390.39 -9.39 -41.10 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -6.99 Total: 13.39 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.08 Total: -1.29 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.29 Total: -61.48 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.17 Total: -17.46 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.71 -9.39 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484926423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.039 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds