Wall clock time and date at job start Wed Apr 1 2020 03:29:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46490 * 109.46143 * 2 1
4 4 C 1.36935 * 120.00121 * 59.99448 * 3 2 1
5 5 H 1.07997 * 120.00139 * 0.02562 * 4 3 2
6 6 C 1.38816 * 120.00401 * 180.02562 * 4 3 2
7 7 N 1.31624 * 119.99569 * 0.02562 * 6 4 3
8 8 Si 1.86800 * 120.00172 * 180.02562 * 6 4 3
9 9 H 1.48508 * 109.46685 * 269.99637 * 8 6 4
10 10 H 1.48494 * 109.47357 * 29.99716 * 8 6 4
11 11 H 1.48502 * 109.47120 * 150.00435 * 8 6 4
12 12 C 1.53044 * 109.45758 * 119.97296 * 2 1 3
13 13 C 1.53166 * 109.32485 * 181.38462 * 12 2 1
14 14 N 1.46920 * 108.77277 * 305.35644 * 13 12 2
15 15 C 1.34771 * 120.63299 * 233.59057 * 14 13 12
16 16 O 1.21281 * 120.00317 * 180.02562 * 15 14 13
17 17 C 1.50705 * 119.99810 * 0.02562 * 15 14 13
18 18 N 1.46500 * 109.46974 * 180.02562 * 17 15 14
19 19 C 1.34777 * 119.99699 * 179.97438 * 18 17 15
20 20 O 1.21548 * 120.00610 * 359.97438 * 19 18 17
21 21 C 1.47849 * 119.99856 * 179.97438 * 19 18 17
22 22 C 1.39577 * 120.14503 * 359.72079 * 21 19 18
23 23 C 1.37956 * 119.85104 * 179.78787 * 22 21 19
24 24 C 1.38353 * 120.14628 * 0.49379 * 23 22 21
25 25 C 1.38356 * 120.29265 * 359.73801 * 24 23 22
26 26 C 1.37956 * 120.14677 * 0.02788 * 25 24 23
27 27 C 1.46932 * 118.73957 * 53.60099 * 14 13 12
28 28 C 1.53045 * 109.45779 * 240.02325 * 2 1 3
29 29 H 1.08997 * 109.46965 * 60.00526 * 1 2 3
30 30 H 1.09002 * 109.46920 * 180.02562 * 1 2 3
31 31 H 1.08994 * 109.46997 * 299.99987 * 1 2 3
32 32 H 0.97000 * 120.00577 * 240.00047 * 3 2 1
33 33 H 0.97001 * 119.99885 * 359.97438 * 7 6 4
34 34 H 1.09000 * 109.49970 * 301.32081 * 12 2 1
35 35 H 1.09001 * 109.50257 * 61.42230 * 12 2 1
36 36 H 1.08998 * 109.59021 * 185.56728 * 13 12 2
37 37 H 1.09004 * 109.70642 * 65.21502 * 13 12 2
38 38 H 1.08997 * 109.46649 * 299.99771 * 17 15 14
39 39 H 1.08996 * 109.47095 * 60.00220 * 17 15 14
40 40 H 0.96997 * 119.99980 * 359.97438 * 18 17 15
41 41 H 1.07996 * 120.07008 * 0.02562 * 22 21 19
42 42 H 1.08007 * 119.92699 * 180.22941 * 23 22 21
43 43 H 1.08002 * 119.85482 * 179.72038 * 24 23 22
44 44 H 1.08000 * 119.92770 * 180.02562 * 25 24 23
45 45 H 1.07999 * 120.07630 * 179.97438 * 26 25 24
46 46 H 1.08996 * 109.58846 * 186.60846 * 27 14 13
47 47 H 1.09005 * 109.69444 * 66.25535 * 27 14 13
48 48 H 1.08995 * 109.50050 * 298.57539 * 28 2 1
49 49 H 1.08996 * 109.49593 * 58.64892 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0181 1.3812 0.0000
4 6 1.6871 2.2244 1.0269
5 1 1.0665 1.8710 1.8371
6 6 2.1491 3.5334 1.0267
7 7 2.9050 3.9642 0.0391
8 14 1.6981 4.6833 2.4280
9 1 0.4347 5.3917 2.0999
10 1 1.5153 3.8970 3.6744
11 1 2.7854 5.6756 2.6236
12 6 2.0398 -0.7209 1.2500
13 6 3.5711 -0.6890 1.2645
14 7 4.0677 -1.2493 0.0004
15 6 4.9616 -2.2579 0.0006
16 8 5.3643 -2.7115 -1.0497
17 6 5.4610 -2.8220 1.3058
18 7 6.4169 -3.8994 1.0382
19 6 6.9979 -4.5545 2.0628
20 8 6.7292 -4.2512 3.2087
21 6 7.9623 -5.6422 1.7928
22 6 8.2687 -5.9970 0.4781
23 6 9.1727 -7.0099 0.2332
24 6 9.7674 -7.6804 1.2872
25 6 9.4643 -7.3370 2.5927
26 6 8.5657 -6.3228 2.8515
27 6 3.5714 -0.6891 -1.2640
28 6 2.0398 -0.7210 -1.2500
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8899
32 1 2.5757 1.6986 -0.7275
33 1 3.1395 3.3670 -0.6884
34 1 1.6574 -0.2208 2.1399
35 1 1.6976 -1.7558 1.2383
36 1 3.9412 -1.2849 2.0988
37 1 3.9163 0.3397 1.3689
38 1 5.9521 -2.0346 1.8776
39 1 4.6201 -3.2154 1.8769
40 1 6.6317 -4.1412 0.1238
41 1 7.8021 -5.4771 -0.3454
42 1 9.4136 -7.2829 -0.7837
43 1 10.4710 -8.4757 1.0900
44 1 9.9323 -7.8641 3.4110
45 1 8.3297 -6.0559 3.8711
46 1 3.9417 -1.2851 -2.0980
47 1 3.9145 0.3401 -1.3696
48 1 1.6977 -1.7558 -1.2382
49 1 1.6570 -0.2213 -2.1398
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484926423.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:29:08
Heat of formation + Delta-G solvation = -28.057253 kcal
Electronic energy + Delta-G solvation = -30125.285481 eV
Core-core repulsion = 26052.533525 eV
Total energy + Delta-G solvation = -4072.751955 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-40.69250 -40.00248 -38.56451 -37.94088 -34.85905 -34.67323 -32.70016 -31.81177
-31.30023 -30.97124 -28.99843 -28.35232 -27.24259 -24.17193 -23.71316 -23.06144
-22.90886 -22.48328 -20.72397 -20.01344 -18.86533 -18.11770 -17.08172 -17.03524
-16.45657 -16.19772 -16.07166 -15.62272 -15.16826 -14.89998 -14.82327 -14.64836
-14.20559 -13.97786 -13.70773 -13.65858 -13.61682 -13.57794 -13.09642 -12.94517
-12.66167 -12.44422 -12.25142 -12.04598 -11.65989 -11.47081 -11.45784 -11.34228
-10.88753 -10.82326 -10.61519 -10.35686 -10.24593 -10.03979 -9.97152 -9.77435
-9.49958 -9.37741 -9.24468 -9.14014 -8.99580 -8.43793 -7.08425 -6.12906
-3.14154 0.50130 0.98595 2.51918 2.61344 2.64021 3.26113 3.48886
3.52352 3.54605 3.66403 4.33208 4.40041 4.47837 4.55695 4.62071
4.76205 4.98958 5.06745 5.11088 5.15114 5.18627 5.22505 5.25545
5.42363 5.43405 5.48981 5.59567 5.62064 5.64215 5.87752 5.91059
5.93280 5.99535 6.01021 6.04696 6.06150 6.10683 6.25918 6.30155
6.37562 6.45699 6.49005 6.56755 6.70411 6.87459 6.94529 7.24931
7.48568 7.78071 7.93853 8.08596 8.71427 9.17174 10.03902 10.19219
11.34685
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.018103 B = 0.002194 C = 0.002087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1546.317222 B =12759.139070 C =13410.855773
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.202 3.798
3 N -0.728 5.728
4 C -0.324 4.324
5 H 0.066 0.934
6 C -0.044 4.044
7 N -0.944 5.944
8 Si 1.078 2.922
9 H -0.297 1.297
10 H -0.295 1.295
11 H -0.289 1.289
12 C -0.134 4.134
13 C 0.111 3.889
14 N -0.591 5.591
15 C 0.508 3.492
16 O -0.555 6.555
17 C 0.101 3.899
18 N -0.712 5.712
19 C 0.559 3.441
20 O -0.537 6.537
21 C -0.133 4.133
22 C -0.085 4.085
23 C -0.128 4.128
24 C -0.095 4.095
25 C -0.130 4.130
26 C -0.059 4.059
27 C 0.117 3.883
28 C -0.131 4.131
29 H 0.048 0.952
30 H 0.036 0.964
31 H 0.057 0.943
32 H 0.366 0.634
33 H 0.254 0.746
34 H 0.079 0.921
35 H 0.050 0.950
36 H 0.072 0.928
37 H 0.093 0.907
38 H 0.102 0.898
39 H 0.101 0.899
40 H 0.411 0.589
41 H 0.129 0.871
42 H 0.129 0.871
43 H 0.127 0.873
44 H 0.130 0.870
45 H 0.137 0.863
46 H 0.085 0.915
47 H 0.074 0.926
48 H 0.064 0.936
49 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.104 -22.118 0.831 23.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.111 3.889
3 N -0.371 5.371
4 C -0.455 4.455
5 H 0.084 0.916
6 C -0.242 4.242
7 N -0.589 5.589
8 Si 0.909 3.091
9 H -0.225 1.225
10 H -0.222 1.222
11 H -0.215 1.215
12 C -0.174 4.174
13 C -0.011 4.011
14 N -0.323 5.323
15 C 0.296 3.704
16 O -0.435 6.435
17 C -0.026 4.026
18 N -0.368 5.368
19 C 0.347 3.653
20 O -0.415 6.415
21 C -0.136 4.136
22 C -0.103 4.103
23 C -0.146 4.146
24 C -0.114 4.114
25 C -0.148 4.148
26 C -0.078 4.078
27 C -0.005 4.005
28 C -0.169 4.169
29 H 0.068 0.932
30 H 0.055 0.945
31 H 0.076 0.924
32 H 0.200 0.800
33 H 0.066 0.934
34 H 0.097 0.903
35 H 0.068 0.932
36 H 0.090 0.910
37 H 0.111 0.889
38 H 0.120 0.880
39 H 0.119 0.881
40 H 0.250 0.750
41 H 0.147 0.853
42 H 0.147 0.853
43 H 0.145 0.855
44 H 0.148 0.852
45 H 0.155 0.845
46 H 0.104 0.896
47 H 0.093 0.907
48 H 0.083 0.917
49 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 9.139 -20.589 1.869 22.604
hybrid contribution -0.157 -1.403 -1.175 1.837
sum 8.981 -21.993 0.694 23.766
Atomic orbital electron populations
1.22192 0.97385 0.99033 1.02203 1.19470 0.92278 0.85755 0.91429
1.42513 1.61181 1.06648 1.26799 1.19935 1.29649 0.94415 1.01463
0.91640 1.25664 0.99049 0.95991 1.03497 1.70866 1.38900 1.37960
1.11210 0.83252 0.75859 0.75714 0.74255 1.22485 1.22177 1.21529
1.22287 0.94274 0.99284 1.01568 1.21851 0.95589 1.00433 0.83275
1.48053 1.41656 1.33723 1.08842 1.20349 0.79481 0.79978 0.90626
1.90640 1.58844 1.60869 1.33138 1.21141 0.94276 0.91451 0.95724
1.45637 1.44434 1.36083 1.10609 1.18258 0.80579 0.81755 0.84723
1.90789 1.63040 1.66658 1.20978 1.19910 1.00478 0.98748 0.94445
1.21421 0.96670 0.96595 0.95646 1.21141 0.97319 0.96450 0.99654
1.21404 0.98430 0.98759 0.92779 1.21181 0.98559 0.97885 0.97141
1.21313 0.93755 0.93445 0.99323 1.21584 0.94222 0.99255 0.85456
1.22112 0.94717 1.00637 0.99450 0.93241 0.94524 0.92393 0.79954
0.93427 0.90293 0.93158 0.90982 0.88916 0.88044 0.88137 0.75032
0.85309 0.85261 0.85537 0.85240 0.84521 0.89648 0.90735 0.91717
0.90755
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.55 8.44 37.16 0.31 -2.24 16
2 C 0.20 3.56 0.74 -131.78 -0.10 3.46 16
3 N -0.73 -15.95 4.14 -47.19 -0.20 -16.14 16
4 C -0.32 -8.14 8.68 -15.06 -0.13 -8.27 16
5 H 0.07 1.64 6.70 -52.49 -0.35 1.29 16
6 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16
7 N -0.94 -27.69 13.70 55.49 0.76 -26.93 16
8 Si 1.08 24.95 29.92 -169.99 -5.09 19.86 16
9 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16
10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16
11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
12 C -0.13 -2.15 4.70 -26.62 -0.13 -2.28 16
13 C 0.11 1.70 6.08 -3.73 -0.02 1.68 16
14 N -0.59 -8.95 2.97 -172.78 -0.51 -9.46 16
15 C 0.51 7.44 7.77 -10.99 -0.09 7.36 16
16 O -0.56 -9.16 15.08 5.56 0.08 -9.07 16
17 C 0.10 1.28 4.50 -5.19 -0.02 1.25 16
18 N -0.71 -8.61 5.48 -62.43 -0.34 -8.95 16
19 C 0.56 7.20 7.77 -12.33 -0.10 7.11 16
20 O -0.54 -8.48 16.35 5.32 0.09 -8.39 16
21 C -0.13 -1.41 5.87 -104.97 -0.62 -2.02 16
22 C -0.08 -0.73 9.54 -39.19 -0.37 -1.11 16
23 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16
24 C -0.10 -0.62 10.04 -39.50 -0.40 -1.02 16
25 C -0.13 -0.94 10.03 -39.64 -0.40 -1.34 16
26 C -0.06 -0.57 9.60 -39.19 -0.38 -0.94 16
27 C 0.12 1.83 6.16 -3.71 -0.02 1.81 16
28 C -0.13 -2.00 4.96 -26.61 -0.13 -2.13 16
29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.06 1.08 7.27 -51.93 -0.38 0.70 16
32 H 0.37 8.51 5.30 -40.82 -0.22 8.30 16
33 H 0.25 7.33 6.77 -40.82 -0.28 7.05 16
34 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16
35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
36 H 0.07 0.93 5.93 -51.93 -0.31 0.62 16
37 H 0.09 1.72 7.75 -51.93 -0.40 1.32 16
38 H 0.10 1.27 7.94 -51.93 -0.41 0.86 16
39 H 0.10 1.20 7.69 -51.93 -0.40 0.80 16
40 H 0.41 4.60 5.47 -40.82 -0.22 4.38 16
41 H 0.13 0.97 6.41 -52.49 -0.34 0.63 16
42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16
43 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16
44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16
45 H 0.14 1.31 7.65 -52.49 -0.40 0.90 16
46 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16
47 H 0.07 1.29 6.94 -51.93 -0.36 0.93 16
48 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
49 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
LS Contribution 390.39 15.07 5.88 5.88
Total: -1.00 -31.71 390.39 -9.39 -41.10
By element:
Atomic # 1 Polarization: 20.38 SS G_CDS: -6.99 Total: 13.39 kcal
Atomic # 6 Polarization: 1.79 SS G_CDS: -3.08 Total: -1.29 kcal
Atomic # 7 Polarization: -61.19 SS G_CDS: -0.29 Total: -61.48 kcal
Atomic # 8 Polarization: -17.63 SS G_CDS: 0.17 Total: -17.46 kcal
Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.86 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -31.71 -9.39 -41.10 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484926423.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.039 kcal
(2) G-P(sol) polarization free energy of solvation -31.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.671 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds