Wall clock time and date at job start Wed Apr 1 2020 03:29:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46490 * 109.46143 * 2 1
4 4 C 1.36935 * 120.00121 * 59.99448 * 3 2 1
5 5 H 1.07997 * 120.00139 * 0.02562 * 4 3 2
6 6 C 1.38816 * 120.00401 * 180.02562 * 4 3 2
7 7 N 1.31624 * 119.99569 * 0.02562 * 6 4 3
8 8 Si 1.86800 * 120.00172 * 180.02562 * 6 4 3
9 9 H 1.48508 * 109.46685 * 269.99637 * 8 6 4
10 10 H 1.48494 * 109.47357 * 29.99716 * 8 6 4
11 11 H 1.48502 * 109.47120 * 150.00435 * 8 6 4
12 12 C 1.53044 * 109.45758 * 119.97296 * 2 1 3
13 13 C 1.53166 * 109.32485 * 181.38462 * 12 2 1
14 14 N 1.46920 * 108.77277 * 305.35644 * 13 12 2
15 15 C 1.34771 * 120.63299 * 233.59057 * 14 13 12
16 16 O 1.21281 * 120.00317 * 180.02562 * 15 14 13
17 17 C 1.50705 * 119.99810 * 0.02562 * 15 14 13
18 18 N 1.46500 * 109.46974 * 180.02562 * 17 15 14
19 19 C 1.34777 * 119.99699 * 179.97438 * 18 17 15
20 20 O 1.21548 * 120.00610 * 359.97438 * 19 18 17
21 21 C 1.47849 * 119.99856 * 179.97438 * 19 18 17
22 22 C 1.39577 * 120.14503 * 359.72079 * 21 19 18
23 23 C 1.37956 * 119.85104 * 179.78787 * 22 21 19
24 24 C 1.38353 * 120.14628 * 0.49379 * 23 22 21
25 25 C 1.38356 * 120.29265 * 359.73801 * 24 23 22
26 26 C 1.37956 * 120.14677 * 0.02788 * 25 24 23
27 27 C 1.46932 * 118.73957 * 53.60099 * 14 13 12
28 28 C 1.53045 * 109.45779 * 240.02325 * 2 1 3
29 29 H 1.08997 * 109.46965 * 60.00526 * 1 2 3
30 30 H 1.09002 * 109.46920 * 180.02562 * 1 2 3
31 31 H 1.08994 * 109.46997 * 299.99987 * 1 2 3
32 32 H 0.97000 * 120.00577 * 240.00047 * 3 2 1
33 33 H 0.97001 * 119.99885 * 359.97438 * 7 6 4
34 34 H 1.09000 * 109.49970 * 301.32081 * 12 2 1
35 35 H 1.09001 * 109.50257 * 61.42230 * 12 2 1
36 36 H 1.08998 * 109.59021 * 185.56728 * 13 12 2
37 37 H 1.09004 * 109.70642 * 65.21502 * 13 12 2
38 38 H 1.08997 * 109.46649 * 299.99771 * 17 15 14
39 39 H 1.08996 * 109.47095 * 60.00220 * 17 15 14
40 40 H 0.96997 * 119.99980 * 359.97438 * 18 17 15
41 41 H 1.07996 * 120.07008 * 0.02562 * 22 21 19
42 42 H 1.08007 * 119.92699 * 180.22941 * 23 22 21
43 43 H 1.08002 * 119.85482 * 179.72038 * 24 23 22
44 44 H 1.08000 * 119.92770 * 180.02562 * 25 24 23
45 45 H 1.07999 * 120.07630 * 179.97438 * 26 25 24
46 46 H 1.08996 * 109.58846 * 186.60846 * 27 14 13
47 47 H 1.09005 * 109.69444 * 66.25535 * 27 14 13
48 48 H 1.08995 * 109.50050 * 298.57539 * 28 2 1
49 49 H 1.08996 * 109.49593 * 58.64892 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0181 1.3812 0.0000
4 6 1.6871 2.2244 1.0269
5 1 1.0665 1.8710 1.8371
6 6 2.1491 3.5334 1.0267
7 7 2.9050 3.9642 0.0391
8 14 1.6981 4.6833 2.4280
9 1 0.4347 5.3917 2.0999
10 1 1.5153 3.8970 3.6744
11 1 2.7854 5.6756 2.6236
12 6 2.0398 -0.7209 1.2500
13 6 3.5711 -0.6890 1.2645
14 7 4.0677 -1.2493 0.0004
15 6 4.9616 -2.2579 0.0006
16 8 5.3643 -2.7115 -1.0497
17 6 5.4610 -2.8220 1.3058
18 7 6.4169 -3.8994 1.0382
19 6 6.9979 -4.5545 2.0628
20 8 6.7292 -4.2512 3.2087
21 6 7.9623 -5.6422 1.7928
22 6 8.2687 -5.9970 0.4781
23 6 9.1727 -7.0099 0.2332
24 6 9.7674 -7.6804 1.2872
25 6 9.4643 -7.3370 2.5927
26 6 8.5657 -6.3228 2.8515
27 6 3.5714 -0.6891 -1.2640
28 6 2.0398 -0.7210 -1.2500
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8899
32 1 2.5757 1.6986 -0.7275
33 1 3.1395 3.3670 -0.6884
34 1 1.6574 -0.2208 2.1399
35 1 1.6976 -1.7558 1.2383
36 1 3.9412 -1.2849 2.0988
37 1 3.9163 0.3397 1.3689
38 1 5.9521 -2.0346 1.8776
39 1 4.6201 -3.2154 1.8769
40 1 6.6317 -4.1412 0.1238
41 1 7.8021 -5.4771 -0.3454
42 1 9.4136 -7.2829 -0.7837
43 1 10.4710 -8.4757 1.0900
44 1 9.9323 -7.8641 3.4110
45 1 8.3297 -6.0559 3.8711
46 1 3.9417 -1.2851 -2.0980
47 1 3.9145 0.3401 -1.3696
48 1 1.6977 -1.7558 -1.2382
49 1 1.6570 -0.2213 -2.1398
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484926423.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:29:07
Heat of formation + Delta-G solvation = -47.771087 kcal
Electronic energy + Delta-G solvation = -30126.140337 eV
Core-core repulsion = 26052.533525 eV
Total energy + Delta-G solvation = -4073.606811 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.77923 -41.03604 -39.55784 -39.07892 -36.31582 -35.77742 -34.44094 -32.68023
-32.12201 -31.88405 -30.63650 -29.69934 -28.41044 -25.75120 -24.87630 -24.37280
-23.91692 -23.34490 -21.62607 -21.28204 -20.06574 -19.32710 -18.83687 -18.13651
-17.40605 -17.24858 -17.13209 -16.65061 -16.50859 -15.99297 -15.92400 -15.66016
-15.46482 -15.34824 -15.07321 -14.80847 -14.76448 -14.46333 -14.21636 -14.10107
-13.85000 -13.56391 -13.42683 -13.25490 -12.81478 -12.73046 -12.63599 -12.62603
-12.27839 -12.17557 -12.03991 -11.89818 -11.77345 -11.48972 -11.23775 -11.08723
-10.94995 -10.81866 -10.46655 -9.97285 -9.93639 -9.76676 -8.98493 -8.24379
-5.18272 -0.18450 0.39778 1.33524 1.56535 1.60937 1.69565 1.75764
1.82711 2.17601 2.76155 2.87370 3.20471 3.51080 3.59012 3.68034
3.85899 3.87733 3.90651 4.00568 4.06521 4.15855 4.19298 4.21087
4.25149 4.34054 4.45307 4.51229 4.55146 4.58843 4.70452 4.78157
4.83600 4.92727 4.95007 4.99209 5.04446 5.07544 5.09780 5.22217
5.27908 5.32594 5.43263 5.49402 5.49470 5.56944 5.77035 5.93151
6.24707 6.31811 6.62284 6.85859 6.98604 7.21198 8.12357 8.24527
9.27208
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.018103 B = 0.002194 C = 0.002087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1546.317222 B =12759.139070 C =13410.855773
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.191 3.809
3 N -0.735 5.735
4 C -0.296 4.296
5 H 0.069 0.931
6 C -0.109 4.109
7 N -0.984 5.984
8 Si 1.118 2.882
9 H -0.293 1.293
10 H -0.272 1.272
11 H -0.302 1.302
12 C -0.129 4.129
13 C 0.118 3.882
14 N -0.591 5.591
15 C 0.513 3.487
16 O -0.572 6.572
17 C 0.105 3.895
18 N -0.708 5.708
19 C 0.559 3.441
20 O -0.574 6.574
21 C -0.158 4.158
22 C -0.090 4.090
23 C -0.129 4.129
24 C -0.088 4.088
25 C -0.130 4.130
26 C -0.076 4.076
27 C 0.120 3.880
28 C -0.120 4.120
29 H 0.038 0.962
30 H 0.068 0.932
31 H 0.039 0.961
32 H 0.357 0.643
33 H 0.243 0.757
34 H 0.065 0.935
35 H 0.078 0.922
36 H 0.100 0.900
37 H 0.056 0.944
38 H 0.103 0.897
39 H 0.113 0.887
40 H 0.415 0.585
41 H 0.135 0.865
42 H 0.155 0.845
43 H 0.159 0.841
44 H 0.154 0.846
45 H 0.127 0.873
46 H 0.091 0.909
47 H 0.051 0.949
48 H 0.087 0.913
49 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.397 -25.233 0.990 26.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.101 3.899
3 N -0.377 5.377
4 C -0.428 4.428
5 H 0.087 0.913
6 C -0.300 4.300
7 N -0.634 5.634
8 Si 0.946 3.054
9 H -0.221 1.221
10 H -0.198 1.198
11 H -0.229 1.229
12 C -0.169 4.169
13 C -0.005 4.005
14 N -0.323 5.323
15 C 0.302 3.698
16 O -0.453 6.453
17 C -0.022 4.022
18 N -0.363 5.363
19 C 0.348 3.652
20 O -0.455 6.455
21 C -0.161 4.161
22 C -0.109 4.109
23 C -0.147 4.147
24 C -0.106 4.106
25 C -0.148 4.148
26 C -0.095 4.095
27 C -0.002 4.002
28 C -0.159 4.159
29 H 0.057 0.943
30 H 0.087 0.913
31 H 0.058 0.942
32 H 0.190 0.810
33 H 0.054 0.946
34 H 0.084 0.916
35 H 0.097 0.903
36 H 0.118 0.882
37 H 0.074 0.926
38 H 0.121 0.879
39 H 0.131 0.869
40 H 0.255 0.745
41 H 0.153 0.847
42 H 0.173 0.827
43 H 0.176 0.824
44 H 0.171 0.829
45 H 0.145 0.855
46 H 0.109 0.891
47 H 0.069 0.931
48 H 0.105 0.895
49 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 9.403 -23.766 2.022 25.638
hybrid contribution -0.215 -0.597 -1.275 1.424
sum 9.188 -24.363 0.747 26.049
Atomic orbital electron populations
1.22114 0.96578 1.00715 1.00798 1.19815 0.92760 0.83849 0.93479
1.42679 1.61052 1.08267 1.25727 1.20171 1.26961 0.94293 1.01407
0.91322 1.26768 0.99952 0.98275 1.05027 1.70964 1.41837 1.38207
1.12366 0.82700 0.75151 0.74353 0.73195 1.22078 1.19754 1.22936
1.22214 0.94422 1.00427 0.99823 1.21718 0.95357 0.99037 0.84360
1.48031 1.41927 1.33853 1.08474 1.20592 0.78755 0.79462 0.91037
1.90632 1.59216 1.61386 1.34017 1.21117 0.94842 0.91725 0.94540
1.45616 1.44143 1.35729 1.10807 1.18670 0.80479 0.81911 0.84154
1.90756 1.64474 1.67957 1.22285 1.19861 1.01321 0.99106 0.95770
1.21564 0.97199 0.97242 0.94898 1.21503 0.96382 0.95564 1.01247
1.21830 0.97950 0.98737 0.92103 1.21484 0.97675 0.97034 0.98562
1.21403 0.94833 0.94536 0.98735 1.21476 0.94628 0.98086 0.86039
1.22028 0.94140 1.01455 0.98246 0.94252 0.91296 0.94158 0.81007
0.94636 0.91601 0.90330 0.88162 0.92553 0.87939 0.86910 0.74475
0.84697 0.82743 0.82378 0.82881 0.85541 0.89092 0.93083 0.89489
0.90643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.65 8.44 71.98 0.61 -4.04 16
2 C 0.19 6.48 0.74 3.64 0.00 6.48 16
3 N -0.73 -32.52 4.14 -303.23 -1.25 -33.77 16
4 C -0.30 -15.00 8.68 84.03 0.73 -14.27 16
5 H 0.07 3.40 6.70 -2.91 -0.02 3.38 16
6 C -0.11 -6.03 5.50 84.86 0.47 -5.56 16
7 N -0.98 -59.60 13.70 21.65 0.30 -59.31 16
8 Si 1.12 50.96 29.92 68.60 2.05 53.01 16
9 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16
10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16
11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16
12 C -0.13 -3.91 4.70 30.66 0.14 -3.76 16
13 C 0.12 3.51 6.08 86.35 0.52 4.04 16
14 N -0.59 -17.33 2.97 -818.95 -2.43 -19.77 16
15 C 0.51 14.40 7.77 87.66 0.68 15.08 16
16 O -0.57 -18.18 15.08 -3.03 -0.05 -18.23 16
17 C 0.10 2.53 4.50 85.63 0.39 2.92 16
18 N -0.71 -16.66 5.48 -469.71 -2.57 -19.24 16
19 C 0.56 14.39 7.77 86.79 0.67 15.06 16
20 O -0.57 -18.40 16.35 -3.87 -0.06 -18.46 16
21 C -0.16 -3.28 5.87 -20.09 -0.12 -3.40 16
22 C -0.09 -1.44 9.54 22.53 0.21 -1.22 16
23 C -0.13 -1.47 10.03 22.23 0.22 -1.25 16
24 C -0.09 -0.86 10.04 22.33 0.22 -0.64 16
25 C -0.13 -1.61 10.03 22.23 0.22 -1.38 16
26 C -0.08 -1.42 9.60 22.53 0.22 -1.20 16
27 C 0.12 3.70 6.16 86.36 0.53 4.23 16
28 C -0.12 -3.49 4.96 30.67 0.15 -3.34 16
29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16
30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
31 H 0.04 1.43 7.27 -2.39 -0.02 1.41 16
32 H 0.36 17.14 5.30 -92.71 -0.49 16.65 16
33 H 0.24 14.63 6.77 -92.71 -0.63 14.01 16
34 H 0.07 2.19 7.31 -2.39 -0.02 2.17 16
35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
36 H 0.10 2.42 5.93 -2.39 -0.01 2.40 16
37 H 0.06 2.12 7.75 -2.38 -0.02 2.11 16
38 H 0.10 2.50 7.94 -2.39 -0.02 2.48 16
39 H 0.11 2.48 7.69 -2.39 -0.02 2.47 16
40 H 0.42 8.98 5.47 -92.71 -0.51 8.47 16
41 H 0.14 1.86 6.41 -2.91 -0.02 1.84 16
42 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16
43 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16
44 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16
45 H 0.13 2.51 7.65 -2.91 -0.02 2.48 16
46 H 0.09 2.71 7.01 -2.39 -0.02 2.69 16
47 H 0.05 1.82 6.94 -2.38 -0.02 1.80 16
48 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
49 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -70.19 390.39 1.99 -68.20
By element:
Atomic # 1 Polarization: 39.67 SS G_CDS: 0.13 Total: 39.80 kcal
Atomic # 6 Polarization: 1.88 SS G_CDS: 5.88 Total: 7.76 kcal
Atomic # 7 Polarization: -126.12 SS G_CDS: -5.96 Total: -132.08 kcal
Atomic # 8 Polarization: -36.58 SS G_CDS: -0.11 Total: -36.69 kcal
Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal
Total: -70.19 1.99 -68.20 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484926423.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.425 kcal
(2) G-P(sol) polarization free energy of solvation -70.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.762 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.196 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds