Wall clock time and date at job start Wed Apr 1 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.46143 * 2 1 4 4 C 1.36935 * 120.00121 * 59.99448 * 3 2 1 5 5 H 1.07997 * 120.00139 * 0.02562 * 4 3 2 6 6 C 1.38816 * 120.00401 * 180.02562 * 4 3 2 7 7 N 1.31624 * 119.99569 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00172 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.46685 * 269.99637 * 8 6 4 10 10 H 1.48494 * 109.47357 * 29.99716 * 8 6 4 11 11 H 1.48502 * 109.47120 * 150.00435 * 8 6 4 12 12 C 1.53044 * 109.45758 * 119.97296 * 2 1 3 13 13 C 1.53166 * 109.32485 * 181.38462 * 12 2 1 14 14 N 1.46920 * 108.77277 * 305.35644 * 13 12 2 15 15 C 1.34771 * 120.63299 * 233.59057 * 14 13 12 16 16 O 1.21281 * 120.00317 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99810 * 0.02562 * 15 14 13 18 18 N 1.46500 * 109.46974 * 180.02562 * 17 15 14 19 19 C 1.34777 * 119.99699 * 179.97438 * 18 17 15 20 20 O 1.21548 * 120.00610 * 359.97438 * 19 18 17 21 21 C 1.47849 * 119.99856 * 179.97438 * 19 18 17 22 22 C 1.39577 * 120.14503 * 359.72079 * 21 19 18 23 23 C 1.37956 * 119.85104 * 179.78787 * 22 21 19 24 24 C 1.38353 * 120.14628 * 0.49379 * 23 22 21 25 25 C 1.38356 * 120.29265 * 359.73801 * 24 23 22 26 26 C 1.37956 * 120.14677 * 0.02788 * 25 24 23 27 27 C 1.46932 * 118.73957 * 53.60099 * 14 13 12 28 28 C 1.53045 * 109.45779 * 240.02325 * 2 1 3 29 29 H 1.08997 * 109.46965 * 60.00526 * 1 2 3 30 30 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46997 * 299.99987 * 1 2 3 32 32 H 0.97000 * 120.00577 * 240.00047 * 3 2 1 33 33 H 0.97001 * 119.99885 * 359.97438 * 7 6 4 34 34 H 1.09000 * 109.49970 * 301.32081 * 12 2 1 35 35 H 1.09001 * 109.50257 * 61.42230 * 12 2 1 36 36 H 1.08998 * 109.59021 * 185.56728 * 13 12 2 37 37 H 1.09004 * 109.70642 * 65.21502 * 13 12 2 38 38 H 1.08997 * 109.46649 * 299.99771 * 17 15 14 39 39 H 1.08996 * 109.47095 * 60.00220 * 17 15 14 40 40 H 0.96997 * 119.99980 * 359.97438 * 18 17 15 41 41 H 1.07996 * 120.07008 * 0.02562 * 22 21 19 42 42 H 1.08007 * 119.92699 * 180.22941 * 23 22 21 43 43 H 1.08002 * 119.85482 * 179.72038 * 24 23 22 44 44 H 1.08000 * 119.92770 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.07630 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.58846 * 186.60846 * 27 14 13 47 47 H 1.09005 * 109.69444 * 66.25535 * 27 14 13 48 48 H 1.08995 * 109.50050 * 298.57539 * 28 2 1 49 49 H 1.08996 * 109.49593 * 58.64892 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6871 2.2244 1.0269 5 1 1.0665 1.8710 1.8371 6 6 2.1491 3.5334 1.0267 7 7 2.9050 3.9642 0.0391 8 14 1.6981 4.6833 2.4280 9 1 0.4347 5.3917 2.0999 10 1 1.5153 3.8970 3.6744 11 1 2.7854 5.6756 2.6236 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6890 1.2645 14 7 4.0677 -1.2493 0.0004 15 6 4.9616 -2.2579 0.0006 16 8 5.3643 -2.7115 -1.0497 17 6 5.4610 -2.8220 1.3058 18 7 6.4169 -3.8994 1.0382 19 6 6.9979 -4.5545 2.0628 20 8 6.7292 -4.2512 3.2087 21 6 7.9623 -5.6422 1.7928 22 6 8.2687 -5.9970 0.4781 23 6 9.1727 -7.0099 0.2332 24 6 9.7674 -7.6804 1.2872 25 6 9.4643 -7.3370 2.5927 26 6 8.5657 -6.3228 2.8515 27 6 3.5714 -0.6891 -1.2640 28 6 2.0398 -0.7210 -1.2500 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.5757 1.6986 -0.7275 33 1 3.1395 3.3670 -0.6884 34 1 1.6574 -0.2208 2.1399 35 1 1.6976 -1.7558 1.2383 36 1 3.9412 -1.2849 2.0988 37 1 3.9163 0.3397 1.3689 38 1 5.9521 -2.0346 1.8776 39 1 4.6201 -3.2154 1.8769 40 1 6.6317 -4.1412 0.1238 41 1 7.8021 -5.4771 -0.3454 42 1 9.4136 -7.2829 -0.7837 43 1 10.4710 -8.4757 1.0900 44 1 9.9323 -7.8641 3.4110 45 1 8.3297 -6.0559 3.8711 46 1 3.9417 -1.2851 -2.0980 47 1 3.9145 0.3401 -1.3696 48 1 1.6977 -1.7558 -1.2382 49 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484926423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:07 Heat of formation + Delta-G solvation = -47.771087 kcal Electronic energy + Delta-G solvation = -30126.140337 eV Core-core repulsion = 26052.533525 eV Total energy + Delta-G solvation = -4073.606811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.77923 -41.03604 -39.55784 -39.07892 -36.31582 -35.77742 -34.44094 -32.68023 -32.12201 -31.88405 -30.63650 -29.69934 -28.41044 -25.75120 -24.87630 -24.37280 -23.91692 -23.34490 -21.62607 -21.28204 -20.06574 -19.32710 -18.83687 -18.13651 -17.40605 -17.24858 -17.13209 -16.65061 -16.50859 -15.99297 -15.92400 -15.66016 -15.46482 -15.34824 -15.07321 -14.80847 -14.76448 -14.46333 -14.21636 -14.10107 -13.85000 -13.56391 -13.42683 -13.25490 -12.81478 -12.73046 -12.63599 -12.62603 -12.27839 -12.17557 -12.03991 -11.89818 -11.77345 -11.48972 -11.23775 -11.08723 -10.94995 -10.81866 -10.46655 -9.97285 -9.93639 -9.76676 -8.98493 -8.24379 -5.18272 -0.18450 0.39778 1.33524 1.56535 1.60937 1.69565 1.75764 1.82711 2.17601 2.76155 2.87370 3.20471 3.51080 3.59012 3.68034 3.85899 3.87733 3.90651 4.00568 4.06521 4.15855 4.19298 4.21087 4.25149 4.34054 4.45307 4.51229 4.55146 4.58843 4.70452 4.78157 4.83600 4.92727 4.95007 4.99209 5.04446 5.07544 5.09780 5.22217 5.27908 5.32594 5.43263 5.49402 5.49470 5.56944 5.77035 5.93151 6.24707 6.31811 6.62284 6.85859 6.98604 7.21198 8.12357 8.24527 9.27208 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.002194 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.317222 B =12759.139070 C =13410.855773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.191 3.809 3 N -0.735 5.735 4 C -0.296 4.296 5 H 0.069 0.931 6 C -0.109 4.109 7 N -0.984 5.984 8 Si 1.118 2.882 9 H -0.293 1.293 10 H -0.272 1.272 11 H -0.302 1.302 12 C -0.129 4.129 13 C 0.118 3.882 14 N -0.591 5.591 15 C 0.513 3.487 16 O -0.572 6.572 17 C 0.105 3.895 18 N -0.708 5.708 19 C 0.559 3.441 20 O -0.574 6.574 21 C -0.158 4.158 22 C -0.090 4.090 23 C -0.129 4.129 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.076 4.076 27 C 0.120 3.880 28 C -0.120 4.120 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.357 0.643 33 H 0.243 0.757 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.415 0.585 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.127 0.873 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.087 0.913 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -25.233 0.990 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.101 3.899 3 N -0.377 5.377 4 C -0.428 4.428 5 H 0.087 0.913 6 C -0.300 4.300 7 N -0.634 5.634 8 Si 0.946 3.054 9 H -0.221 1.221 10 H -0.198 1.198 11 H -0.229 1.229 12 C -0.169 4.169 13 C -0.005 4.005 14 N -0.323 5.323 15 C 0.302 3.698 16 O -0.453 6.453 17 C -0.022 4.022 18 N -0.363 5.363 19 C 0.348 3.652 20 O -0.455 6.455 21 C -0.161 4.161 22 C -0.109 4.109 23 C -0.147 4.147 24 C -0.106 4.106 25 C -0.148 4.148 26 C -0.095 4.095 27 C -0.002 4.002 28 C -0.159 4.159 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.190 0.810 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.255 0.745 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.171 0.829 45 H 0.145 0.855 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.403 -23.766 2.022 25.638 hybrid contribution -0.215 -0.597 -1.275 1.424 sum 9.188 -24.363 0.747 26.049 Atomic orbital electron populations 1.22114 0.96578 1.00715 1.00798 1.19815 0.92760 0.83849 0.93479 1.42679 1.61052 1.08267 1.25727 1.20171 1.26961 0.94293 1.01407 0.91322 1.26768 0.99952 0.98275 1.05027 1.70964 1.41837 1.38207 1.12366 0.82700 0.75151 0.74353 0.73195 1.22078 1.19754 1.22936 1.22214 0.94422 1.00427 0.99823 1.21718 0.95357 0.99037 0.84360 1.48031 1.41927 1.33853 1.08474 1.20592 0.78755 0.79462 0.91037 1.90632 1.59216 1.61386 1.34017 1.21117 0.94842 0.91725 0.94540 1.45616 1.44143 1.35729 1.10807 1.18670 0.80479 0.81911 0.84154 1.90756 1.64474 1.67957 1.22285 1.19861 1.01321 0.99106 0.95770 1.21564 0.97199 0.97242 0.94898 1.21503 0.96382 0.95564 1.01247 1.21830 0.97950 0.98737 0.92103 1.21484 0.97675 0.97034 0.98562 1.21403 0.94833 0.94536 0.98735 1.21476 0.94628 0.98086 0.86039 1.22028 0.94140 1.01455 0.98246 0.94252 0.91296 0.94158 0.81007 0.94636 0.91601 0.90330 0.88162 0.92553 0.87939 0.86910 0.74475 0.84697 0.82743 0.82378 0.82881 0.85541 0.89092 0.93083 0.89489 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.44 71.98 0.61 -4.04 16 2 C 0.19 6.48 0.74 3.64 0.00 6.48 16 3 N -0.73 -32.52 4.14 -303.23 -1.25 -33.77 16 4 C -0.30 -15.00 8.68 84.03 0.73 -14.27 16 5 H 0.07 3.40 6.70 -2.91 -0.02 3.38 16 6 C -0.11 -6.03 5.50 84.86 0.47 -5.56 16 7 N -0.98 -59.60 13.70 21.65 0.30 -59.31 16 8 Si 1.12 50.96 29.92 68.60 2.05 53.01 16 9 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 C -0.13 -3.91 4.70 30.66 0.14 -3.76 16 13 C 0.12 3.51 6.08 86.35 0.52 4.04 16 14 N -0.59 -17.33 2.97 -818.95 -2.43 -19.77 16 15 C 0.51 14.40 7.77 87.66 0.68 15.08 16 16 O -0.57 -18.18 15.08 -3.03 -0.05 -18.23 16 17 C 0.10 2.53 4.50 85.63 0.39 2.92 16 18 N -0.71 -16.66 5.48 -469.71 -2.57 -19.24 16 19 C 0.56 14.39 7.77 86.79 0.67 15.06 16 20 O -0.57 -18.40 16.35 -3.87 -0.06 -18.46 16 21 C -0.16 -3.28 5.87 -20.09 -0.12 -3.40 16 22 C -0.09 -1.44 9.54 22.53 0.21 -1.22 16 23 C -0.13 -1.47 10.03 22.23 0.22 -1.25 16 24 C -0.09 -0.86 10.04 22.33 0.22 -0.64 16 25 C -0.13 -1.61 10.03 22.23 0.22 -1.38 16 26 C -0.08 -1.42 9.60 22.53 0.22 -1.20 16 27 C 0.12 3.70 6.16 86.36 0.53 4.23 16 28 C -0.12 -3.49 4.96 30.67 0.15 -3.34 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.43 7.27 -2.39 -0.02 1.41 16 32 H 0.36 17.14 5.30 -92.71 -0.49 16.65 16 33 H 0.24 14.63 6.77 -92.71 -0.63 14.01 16 34 H 0.07 2.19 7.31 -2.39 -0.02 2.17 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 2.42 5.93 -2.39 -0.01 2.40 16 37 H 0.06 2.12 7.75 -2.38 -0.02 2.11 16 38 H 0.10 2.50 7.94 -2.39 -0.02 2.48 16 39 H 0.11 2.48 7.69 -2.39 -0.02 2.47 16 40 H 0.42 8.98 5.47 -92.71 -0.51 8.47 16 41 H 0.14 1.86 6.41 -2.91 -0.02 1.84 16 42 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 43 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 44 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 45 H 0.13 2.51 7.65 -2.91 -0.02 2.48 16 46 H 0.09 2.71 7.01 -2.39 -0.02 2.69 16 47 H 0.05 1.82 6.94 -2.38 -0.02 1.80 16 48 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.19 390.39 1.99 -68.20 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: 0.13 Total: 39.80 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.88 Total: 7.76 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -5.96 Total: -132.08 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.11 Total: -36.69 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -70.19 1.99 -68.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484926423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.425 kcal (2) G-P(sol) polarization free energy of solvation -70.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds