Wall clock time and date at job start Wed Apr 1 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08995 * 109.71092 * 233.82302 * 3 2 1 5 5 C 1.52877 * 109.61916 * 113.52024 * 3 2 1 6 6 O 1.42957 * 109.30257 * 188.11181 * 5 3 2 7 7 C 1.42963 * 114.16565 * 62.45058 * 6 5 3 8 8 C 1.53293 * 109.22280 * 297.42208 * 7 6 5 9 9 N 1.47149 * 108.38715 * 52.29916 * 8 7 6 10 10 C 1.34777 * 120.98723 * 129.44078 * 9 8 7 11 11 O 1.21279 * 120.00636 * 179.97438 * 10 9 8 12 12 C 1.50709 * 119.99624 * 0.02562 * 10 9 8 13 13 C 1.52995 * 109.47258 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47256 * 179.97438 * 13 12 10 15 15 C 1.39867 * 126.04245 * 270.00111 * 14 13 12 16 16 C 1.50704 * 125.89829 * 0.02562 * 15 14 13 17 17 N 1.30834 * 108.20347 * 179.97438 * 15 14 13 18 18 N 1.40082 * 108.20758 * 0.02562 * 17 15 14 19 19 C 1.46499 * 126.03977 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.46933 * 270.02352 * 19 18 17 21 21 H 1.07998 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99919 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00073 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00088 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46957 * 89.99576 * 24 22 20 26 26 H 1.48493 * 109.47490 * 209.99656 * 24 22 20 27 27 H 1.48497 * 109.47134 * 329.99879 * 24 22 20 28 28 C 1.34954 * 107.92310 * 0.02562 * 18 17 15 29 29 C 1.50701 * 126.12392 * 179.73583 * 28 18 17 30 30 H 4.19111 * 14.97976 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.58386 * 68.09848 * 5 3 2 32 32 H 1.09002 * 109.37137 * 308.00078 * 5 3 2 33 33 H 1.09002 * 109.51613 * 177.49156 * 7 6 5 34 34 H 1.09002 * 109.51145 * 57.34313 * 7 6 5 35 35 H 1.09002 * 109.68360 * 292.57946 * 8 7 6 36 36 H 1.08998 * 109.71465 * 172.04020 * 8 7 6 37 37 H 1.09002 * 109.46953 * 59.99359 * 12 10 9 38 38 H 1.08997 * 109.46796 * 300.00190 * 12 10 9 39 39 H 1.09006 * 109.46724 * 60.00250 * 13 12 10 40 40 H 1.09003 * 109.47371 * 300.00358 * 13 12 10 41 41 H 1.08995 * 109.47204 * 269.97110 * 16 15 14 42 42 H 1.09000 * 109.46905 * 29.97123 * 16 15 14 43 43 H 1.08999 * 109.46788 * 149.97276 * 16 15 14 44 44 H 1.08991 * 109.47300 * 30.02075 * 19 18 17 45 45 H 1.09005 * 109.47394 * 150.02718 * 19 18 17 46 46 H 0.97005 * 120.00035 * 180.02562 * 23 22 20 47 47 H 1.09006 * 109.47001 * 90.02609 * 29 28 18 48 48 H 1.08999 * 109.46835 * 210.02376 * 29 28 18 49 49 H 1.08998 * 109.47331 * 330.02467 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0133 0.6065 0.8283 5 6 3.1590 0.5756 -1.3204 6 8 4.5759 0.4003 -1.3933 7 6 4.9976 -0.9657 -1.3889 8 6 4.5797 -1.6188 -0.0665 9 7 3.1423 -1.3780 0.1362 10 6 2.3040 -2.3910 0.4321 11 8 1.1224 -2.1722 0.5960 12 6 2.8352 -3.7955 0.5606 13 6 1.6856 -4.7465 0.8995 14 6 2.2167 -6.1510 1.0273 15 6 2.3223 -7.0881 -0.0057 16 6 1.9246 -6.8679 -1.4425 17 7 2.8270 -8.1883 0.4907 18 7 3.0583 -7.9862 1.8574 19 6 3.6169 -8.9669 2.7914 20 6 2.4991 -9.7722 3.4021 21 1 1.4750 -9.5731 3.1228 22 6 2.7837 -10.7625 4.3182 23 7 4.0307 -11.0047 4.6587 24 14 1.3981 -11.7603 5.0759 25 1 1.1337 -12.9568 4.2369 26 1 1.7877 -12.1904 6.4427 27 1 0.1712 -10.9270 5.1501 28 6 2.6747 -6.7287 2.1620 29 6 2.7401 -6.0849 3.5230 30 1 -1.0500 0.0000 -0.0008 31 1 2.9204 1.6378 -1.3736 32 1 2.6843 0.0531 -2.1509 33 1 6.0818 -1.0124 -1.4915 34 1 4.5296 -1.4939 -2.2197 35 1 5.1450 -1.1787 0.7550 36 1 4.7697 -2.6912 -0.1099 37 1 3.5814 -3.8305 1.3544 38 1 3.2923 -4.0985 -0.3813 39 1 0.9392 -4.7115 0.1058 40 1 1.2288 -4.4432 1.8415 41 1 0.8817 -7.1539 -1.5787 42 1 2.0489 -5.8153 -1.6967 43 1 2.5556 -7.4754 -2.0912 44 1 4.2944 -9.6328 2.2569 45 1 4.1635 -8.4483 3.5791 46 1 4.2310 -11.7017 5.3030 47 1 3.7038 -5.5901 3.6449 48 1 1.9402 -5.3504 3.6163 49 1 2.6238 -6.8484 4.2921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001637715159.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:30 Heat of formation + Delta-G solvation = 51.989252 kcal Electronic energy + Delta-G solvation = -30207.948338 eV Core-core repulsion = 26138.667460 eV Total energy + Delta-G solvation = -4069.280878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.89772 -40.51563 -38.61383 -35.25856 -34.63244 -34.02578 -33.11673 -32.50154 -30.86575 -30.30008 -28.99452 -28.31340 -26.70024 -25.90422 -24.96898 -23.88365 -22.54451 -21.96670 -20.03082 -18.83465 -18.68739 -18.29159 -17.19805 -16.81223 -16.72171 -16.30160 -15.99641 -15.61346 -15.45496 -15.16679 -14.64423 -14.42898 -14.35985 -13.91294 -13.43028 -13.36570 -13.09262 -12.93431 -12.70200 -12.53987 -12.51972 -12.30618 -12.06184 -11.98288 -11.84201 -11.63118 -11.46009 -11.40190 -11.29324 -11.16040 -10.96174 -10.82429 -10.75014 -10.67153 -10.48872 -10.27201 -9.75813 -9.64111 -8.98448 -8.85353 -8.66919 -8.20306 -7.50174 -6.28587 -4.36132 2.21533 2.51457 2.74337 2.78608 3.15591 3.20010 3.26278 3.30439 3.31710 3.38831 3.59693 4.05069 4.27713 4.28220 4.46269 4.57846 4.68198 4.76023 4.80789 5.04531 5.05296 5.14278 5.20554 5.23696 5.28975 5.32024 5.35235 5.44239 5.65903 5.67856 5.80626 5.83229 5.92368 5.93898 5.98248 6.01060 6.06643 6.21371 6.34921 6.45959 6.51834 6.56927 6.86120 6.99575 7.08093 7.09035 7.49054 7.64289 7.65497 7.86140 8.03103 8.04885 8.64524 8.73478 9.30610 10.78922 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.002252 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.938767 B =12432.727822 C =12673.622716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.191 4.191 3 C 0.230 3.770 4 H 0.097 0.903 5 C 0.059 3.941 6 O -0.375 6.375 7 C 0.044 3.956 8 C 0.073 3.927 9 N -0.623 5.623 10 C 0.515 3.485 11 O -0.512 6.512 12 C -0.132 4.132 13 C -0.009 4.009 14 C -0.269 4.269 15 C 0.050 3.950 16 C -0.063 4.063 17 N -0.296 5.296 18 N -0.325 5.325 19 C 0.257 3.743 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 C 0.095 3.905 29 C -0.091 4.091 30 H 0.214 0.786 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.268 0.732 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 23.284 -10.625 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.192 4.192 3 C 0.128 3.872 4 H 0.115 0.885 5 C -0.019 4.019 6 O -0.293 6.293 7 C -0.034 4.034 8 C -0.050 4.050 9 N -0.360 5.360 10 C 0.304 3.696 11 O -0.387 6.387 12 C -0.172 4.172 13 C -0.048 4.048 14 C -0.281 4.281 15 C -0.114 4.114 16 C -0.122 4.122 17 N -0.120 5.120 18 N -0.105 5.105 19 C 0.139 3.861 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.037 4.037 29 C -0.150 4.150 30 H 0.231 0.769 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.346 22.066 -10.557 24.499 hybrid contribution -1.101 -0.258 0.805 1.388 sum 0.246 21.808 -9.752 23.890 Atomic orbital electron populations 1.24623 0.95530 0.99150 0.98034 1.21744 0.93096 1.01444 1.02898 1.18411 0.85525 0.83938 0.99371 0.88513 1.22895 0.81534 1.02264 0.95220 1.87998 1.21504 1.25377 1.94468 1.23064 1.01293 0.82763 0.96262 1.22515 0.80646 1.03077 0.98779 1.48386 1.08536 1.06672 1.72395 1.21127 0.86212 0.86852 0.75375 1.90816 1.15972 1.83429 1.48442 1.21813 1.01201 0.90330 1.03842 1.19386 0.94741 0.88493 1.02194 1.19340 1.18066 0.98078 0.92623 1.21941 1.01228 0.91897 0.96363 1.20011 1.01238 1.01413 0.89546 1.77266 1.22284 1.21874 0.90602 1.49257 1.45059 1.09917 1.06226 1.19652 0.94797 0.85972 0.85645 1.21313 0.93278 1.18281 1.24618 0.91806 1.24928 0.96156 0.96636 0.96046 1.69919 1.17748 1.32198 1.33095 0.86359 0.81736 0.80268 0.78366 1.20285 1.20849 1.19650 1.20769 0.99458 0.86989 0.96474 1.20402 1.02009 1.00583 0.91964 0.76901 0.87172 0.92110 0.87131 0.92226 0.90071 0.87853 0.89027 0.89153 0.91370 0.91403 0.91401 0.91565 0.91618 0.93067 0.93094 0.92241 0.91290 0.90720 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 17.79 29.55 0.53 -1.21 16 2 C -0.19 -2.20 10.07 -37.12 -0.37 -2.58 16 3 C 0.23 2.16 3.51 -70.42 -0.25 1.92 16 4 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.06 0.44 6.23 37.09 0.23 0.68 16 6 O -0.38 -3.01 10.74 -35.23 -0.38 -3.38 16 7 C 0.04 0.26 6.98 37.31 0.26 0.52 16 8 C 0.07 0.48 6.54 -3.54 -0.02 0.46 16 9 N -0.62 -6.03 3.03 -168.18 -0.51 -6.54 16 10 C 0.51 6.25 7.61 -10.98 -0.08 6.16 16 11 O -0.51 -7.80 12.08 5.56 0.07 -7.73 16 12 C -0.13 -1.49 4.06 -27.88 -0.11 -1.60 16 13 C -0.01 -0.13 4.44 -27.89 -0.12 -0.25 16 14 C -0.27 -4.74 5.35 -105.06 -0.56 -5.30 16 15 C 0.05 0.94 7.22 -82.41 -0.59 0.35 16 16 C -0.06 -0.89 10.12 36.01 0.36 -0.53 16 17 N -0.30 -6.75 12.58 33.67 0.42 -6.33 16 18 N -0.33 -7.51 3.60 -58.31 -0.21 -7.72 16 19 C 0.26 6.55 5.82 -5.19 -0.03 6.52 16 20 C -0.54 -14.78 9.39 -34.44 -0.32 -15.11 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 24 Si 0.91 21.17 29.54 -169.99 -5.02 16.14 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 29 C -0.09 -1.49 9.68 36.01 0.35 -1.14 16 30 H 0.21 1.77 7.80 -54.09 -0.42 1.34 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.59 6.05 -51.93 -0.31 0.27 16 37 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 38 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 39 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 40 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.05 1.28 7.67 -51.93 -0.40 0.88 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.07 1.07 7.14 -51.93 -0.37 0.69 16 49 H 0.08 1.49 7.73 -51.93 -0.40 1.09 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -33.76 405.83 -7.87 -41.63 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.68 Total: 0.23 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.41 Total: -8.13 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.44 Total: -44.87 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.31 Total: -11.12 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.76 -7.87 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637715159.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.620 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds