Wall clock time and date at job start Wed Apr 1 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08995 * 109.71092 * 233.82302 * 3 2 1 5 5 C 1.52877 * 109.61916 * 113.52024 * 3 2 1 6 6 O 1.42957 * 109.30257 * 188.11181 * 5 3 2 7 7 C 1.42963 * 114.16565 * 62.45058 * 6 5 3 8 8 C 1.53293 * 109.22280 * 297.42208 * 7 6 5 9 9 N 1.47149 * 108.38715 * 52.29916 * 8 7 6 10 10 C 1.34777 * 120.98723 * 129.44078 * 9 8 7 11 11 O 1.21279 * 120.00636 * 179.97438 * 10 9 8 12 12 C 1.50709 * 119.99624 * 0.02562 * 10 9 8 13 13 C 1.52995 * 109.47258 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47256 * 179.97438 * 13 12 10 15 15 C 1.39867 * 126.04245 * 270.00111 * 14 13 12 16 16 C 1.50704 * 125.89829 * 0.02562 * 15 14 13 17 17 N 1.30834 * 108.20347 * 179.97438 * 15 14 13 18 18 N 1.40082 * 108.20758 * 0.02562 * 17 15 14 19 19 C 1.46499 * 126.03977 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.46933 * 270.02352 * 19 18 17 21 21 H 1.07998 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99919 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00073 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00088 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46957 * 89.99576 * 24 22 20 26 26 H 1.48493 * 109.47490 * 209.99656 * 24 22 20 27 27 H 1.48497 * 109.47134 * 329.99879 * 24 22 20 28 28 C 1.34954 * 107.92310 * 0.02562 * 18 17 15 29 29 C 1.50701 * 126.12392 * 179.73583 * 28 18 17 30 30 H 4.19111 * 14.97976 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.58386 * 68.09848 * 5 3 2 32 32 H 1.09002 * 109.37137 * 308.00078 * 5 3 2 33 33 H 1.09002 * 109.51613 * 177.49156 * 7 6 5 34 34 H 1.09002 * 109.51145 * 57.34313 * 7 6 5 35 35 H 1.09002 * 109.68360 * 292.57946 * 8 7 6 36 36 H 1.08998 * 109.71465 * 172.04020 * 8 7 6 37 37 H 1.09002 * 109.46953 * 59.99359 * 12 10 9 38 38 H 1.08997 * 109.46796 * 300.00190 * 12 10 9 39 39 H 1.09006 * 109.46724 * 60.00250 * 13 12 10 40 40 H 1.09003 * 109.47371 * 300.00358 * 13 12 10 41 41 H 1.08995 * 109.47204 * 269.97110 * 16 15 14 42 42 H 1.09000 * 109.46905 * 29.97123 * 16 15 14 43 43 H 1.08999 * 109.46788 * 149.97276 * 16 15 14 44 44 H 1.08991 * 109.47300 * 30.02075 * 19 18 17 45 45 H 1.09005 * 109.47394 * 150.02718 * 19 18 17 46 46 H 0.97005 * 120.00035 * 180.02562 * 23 22 20 47 47 H 1.09006 * 109.47001 * 90.02609 * 29 28 18 48 48 H 1.08999 * 109.46835 * 210.02376 * 29 28 18 49 49 H 1.08998 * 109.47331 * 330.02467 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0133 0.6065 0.8283 5 6 3.1590 0.5756 -1.3204 6 8 4.5759 0.4003 -1.3933 7 6 4.9976 -0.9657 -1.3889 8 6 4.5797 -1.6188 -0.0665 9 7 3.1423 -1.3780 0.1362 10 6 2.3040 -2.3910 0.4321 11 8 1.1224 -2.1722 0.5960 12 6 2.8352 -3.7955 0.5606 13 6 1.6856 -4.7465 0.8995 14 6 2.2167 -6.1510 1.0273 15 6 2.3223 -7.0881 -0.0057 16 6 1.9246 -6.8679 -1.4425 17 7 2.8270 -8.1883 0.4907 18 7 3.0583 -7.9862 1.8574 19 6 3.6169 -8.9669 2.7914 20 6 2.4991 -9.7722 3.4021 21 1 1.4750 -9.5731 3.1228 22 6 2.7837 -10.7625 4.3182 23 7 4.0307 -11.0047 4.6587 24 14 1.3981 -11.7603 5.0759 25 1 1.1337 -12.9568 4.2369 26 1 1.7877 -12.1904 6.4427 27 1 0.1712 -10.9270 5.1501 28 6 2.6747 -6.7287 2.1620 29 6 2.7401 -6.0849 3.5230 30 1 -1.0500 0.0000 -0.0008 31 1 2.9204 1.6378 -1.3736 32 1 2.6843 0.0531 -2.1509 33 1 6.0818 -1.0124 -1.4915 34 1 4.5296 -1.4939 -2.2197 35 1 5.1450 -1.1787 0.7550 36 1 4.7697 -2.6912 -0.1099 37 1 3.5814 -3.8305 1.3544 38 1 3.2923 -4.0985 -0.3813 39 1 0.9392 -4.7115 0.1058 40 1 1.2288 -4.4432 1.8415 41 1 0.8817 -7.1539 -1.5787 42 1 2.0489 -5.8153 -1.6967 43 1 2.5556 -7.4754 -2.0912 44 1 4.2944 -9.6328 2.2569 45 1 4.1635 -8.4483 3.5791 46 1 4.2310 -11.7017 5.3030 47 1 3.7038 -5.5901 3.6449 48 1 1.9402 -5.3504 3.6163 49 1 2.6238 -6.8484 4.2921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001637715159.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:28 Heat of formation + Delta-G solvation = 31.294910 kcal Electronic energy + Delta-G solvation = -30208.845712 eV Core-core repulsion = 26138.667460 eV Total energy + Delta-G solvation = -4070.178252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.18255 -41.51407 -39.36275 -36.20246 -35.91897 -35.24110 -34.36004 -34.13507 -31.71871 -31.49127 -30.51114 -29.10514 -27.91310 -27.62378 -25.78683 -25.10007 -23.96554 -22.86274 -20.85410 -20.30460 -20.11658 -19.15184 -18.82574 -17.93050 -17.50626 -17.23433 -16.98231 -16.77003 -16.30011 -16.07667 -15.96052 -15.89809 -15.39969 -14.97715 -14.63037 -14.49574 -14.38873 -14.07967 -14.05015 -13.83950 -13.53733 -13.40083 -13.26181 -13.24805 -13.09891 -12.85943 -12.72255 -12.65001 -12.59362 -12.46251 -12.25552 -12.21403 -11.88900 -11.84732 -11.71688 -11.29362 -11.25652 -11.14431 -10.76598 -9.88446 -9.84086 -9.57048 -9.03374 -8.36113 -6.53855 1.16419 1.34463 1.35737 1.45899 1.47575 1.63623 1.92222 1.94442 1.97336 2.31961 2.41822 2.79110 2.93320 3.34885 3.61538 3.80539 3.87510 3.93331 3.96998 4.08470 4.16807 4.23000 4.24923 4.28605 4.31012 4.53103 4.59529 4.66502 4.69103 4.71266 4.74566 4.78689 4.84385 4.86177 4.87348 4.94096 4.94723 5.03610 5.07135 5.13386 5.27584 5.37971 5.42545 5.49104 5.55655 5.79335 6.04406 6.04733 6.30352 6.31060 6.61484 6.85298 7.11037 7.17650 7.17903 8.69807 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.002252 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.938767 B =12432.727822 C =12673.622716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.209 4.209 3 C 0.224 3.776 4 H 0.105 0.895 5 C 0.066 3.934 6 O -0.386 6.386 7 C 0.042 3.958 8 C 0.069 3.931 9 N -0.619 5.619 10 C 0.513 3.487 11 O -0.550 6.550 12 C -0.122 4.122 13 C -0.001 4.001 14 C -0.257 4.257 15 C 0.054 3.946 16 C -0.062 4.062 17 N -0.349 5.349 18 N -0.355 5.355 19 C 0.276 3.724 20 C -0.554 4.554 21 H 0.046 0.954 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.969 3.031 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.271 1.271 28 C 0.080 3.920 29 C -0.087 4.087 30 H 0.231 0.769 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.020 0.980 45 H 0.047 0.953 46 H 0.274 0.726 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 24.890 -11.210 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.210 4.210 3 C 0.121 3.879 4 H 0.122 0.878 5 C -0.011 4.011 6 O -0.304 6.304 7 C -0.035 4.035 8 C -0.053 4.053 9 N -0.355 5.355 10 C 0.303 3.697 11 O -0.427 6.427 12 C -0.162 4.162 13 C -0.040 4.040 14 C -0.269 4.269 15 C -0.110 4.110 16 C -0.120 4.120 17 N -0.172 5.172 18 N -0.135 5.135 19 C 0.157 3.843 20 C -0.592 4.592 21 H 0.064 0.936 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.793 3.207 25 H -0.200 1.200 26 H -0.193 1.193 27 H -0.195 1.195 28 C -0.050 4.050 29 C -0.145 4.145 30 H 0.248 0.752 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.404 23.706 -11.156 26.238 hybrid contribution -1.096 -0.665 0.910 1.572 sum 0.308 23.042 -10.246 25.219 Atomic orbital electron populations 1.25280 0.96519 0.99023 0.98128 1.22354 0.94132 1.01575 1.02929 1.18632 0.84616 0.83939 1.00674 0.87788 1.22858 0.81411 1.03026 0.93854 1.87994 1.21431 1.26576 1.94385 1.23232 1.02690 0.81815 0.95800 1.22762 0.78803 1.04123 0.99622 1.48429 1.09567 1.06334 1.71162 1.21173 0.85910 0.87436 0.75153 1.90807 1.17502 1.84020 1.50389 1.21683 1.00055 0.89310 1.05142 1.19325 0.95695 0.86937 1.02006 1.19682 1.16443 0.99286 0.91478 1.22767 0.98931 0.90820 0.98521 1.20191 1.01703 1.03557 0.86562 1.77205 1.24893 1.24364 0.90784 1.49006 1.47411 1.10764 1.06353 1.19117 0.93752 0.85955 0.85504 1.21434 0.92926 1.19407 1.25428 0.93581 1.25727 0.98543 0.97367 0.96192 1.69997 1.19369 1.32720 1.33470 0.85385 0.78718 0.78550 0.78032 1.19987 1.19323 1.19527 1.21431 0.99123 0.85982 0.98449 1.20472 1.04279 1.00216 0.89511 0.75222 0.85623 0.92702 0.84809 0.92189 0.88931 0.86639 0.87860 0.87390 0.91346 0.92014 0.90497 0.88535 0.90995 0.96211 0.93496 0.91703 0.88796 0.88513 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 17.79 74.32 1.32 -2.40 16 2 C -0.21 -4.63 10.07 31.12 0.31 -4.31 16 3 C 0.22 3.84 3.51 43.02 0.15 3.99 16 4 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 5 C 0.07 0.88 6.23 71.94 0.45 1.33 16 6 O -0.39 -5.22 10.74 -148.98 -1.60 -6.82 16 7 C 0.04 0.38 6.98 72.08 0.50 0.88 16 8 C 0.07 0.70 6.54 86.35 0.57 1.27 16 9 N -0.62 -10.59 3.03 -804.40 -2.43 -13.02 16 10 C 0.51 11.40 7.61 87.66 0.67 12.06 16 11 O -0.55 -16.05 12.08 -3.03 -0.04 -16.09 16 12 C -0.12 -2.43 4.06 29.85 0.12 -2.31 16 13 C 0.00 -0.02 4.44 29.85 0.13 0.12 16 14 C -0.26 -8.75 5.35 -20.15 -0.11 -8.85 16 15 C 0.05 2.00 7.22 43.10 0.31 2.31 16 16 C -0.06 -1.60 10.12 71.24 0.72 -0.88 16 17 N -0.35 -16.19 12.58 -47.38 -0.60 -16.78 16 18 N -0.36 -16.89 3.60 -338.40 -1.22 -18.11 16 19 C 0.28 14.71 5.82 85.63 0.50 15.20 16 20 C -0.55 -31.53 9.39 25.60 0.24 -31.29 16 21 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 22 C 0.02 1.26 5.46 84.65 0.46 1.72 16 23 N -0.92 -52.25 13.29 21.45 0.28 -51.97 16 24 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 C 0.08 3.12 6.93 41.40 0.29 3.41 16 29 C -0.09 -2.77 9.68 71.24 0.69 -2.08 16 30 H 0.23 3.66 7.80 -4.42 -0.03 3.63 16 31 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 33 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.12 0.91 6.05 -2.39 -0.01 0.89 16 37 H 0.10 1.85 8.01 -2.39 -0.02 1.83 16 38 H 0.11 1.78 7.66 -2.39 -0.02 1.77 16 39 H 0.07 1.84 7.88 -2.38 -0.02 1.82 16 40 H 0.06 1.74 7.10 -2.39 -0.02 1.72 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.10 1.91 7.91 -2.39 -0.02 1.89 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 2.47 7.67 -2.38 -0.02 2.46 16 46 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 47 H 0.09 2.49 8.14 -2.38 -0.02 2.48 16 48 H 0.10 2.62 7.14 -2.39 -0.02 2.60 16 49 H 0.06 2.15 7.73 -2.39 -0.02 2.14 16 Total: -1.00 -75.25 405.83 4.69 -70.56 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.94 Total: 16.39 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 7.33 Total: -9.83 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -3.96 Total: -99.88 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.64 Total: -22.90 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.25 4.69 -70.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637715159.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.851 kcal (2) G-P(sol) polarization free energy of solvation -75.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds