Wall clock time and date at job start Wed Apr 1 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47227 * 313.83674 * 3 2 1 5 5 C 1.34774 * 120.00125 * 90.00392 * 4 3 2 6 6 O 1.21278 * 120.00221 * 180.27341 * 5 4 3 7 7 C 1.50702 * 119.99805 * 359.97438 * 5 4 3 8 8 C 1.53001 * 109.47020 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47020 * 179.97438 * 8 7 5 10 10 C 1.41380 * 126.79896 * 124.71098 * 9 8 7 11 11 C 1.35452 * 103.98176 * 179.88833 * 10 9 8 12 12 C 1.50698 * 126.77642 * 180.14127 * 11 10 9 13 13 O 1.34040 * 106.44495 * 0.36548 * 11 10 9 14 14 N 1.20914 * 111.57155 * 359.75161 * 13 11 10 15 15 C 1.46503 * 120.00044 * 270.00407 * 4 3 2 16 16 C 1.53037 * 109.45926 * 60.02603 * 15 4 3 17 17 C 1.53194 * 109.31064 * 178.60316 * 16 15 4 18 18 N 1.46924 * 108.76714 * 54.65518 * 17 16 15 19 19 C 1.36937 * 120.63218 * 126.40613 * 18 17 16 20 20 H 1.08000 * 119.99922 * 331.82876 * 19 18 17 21 21 C 1.38811 * 120.00160 * 151.82383 * 19 18 17 22 22 N 1.31616 * 119.99922 * 343.07554 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 163.07170 * 21 19 18 24 24 H 1.48506 * 109.46868 * 90.00398 * 23 21 19 25 25 H 1.48495 * 109.47419 * 210.00318 * 23 21 19 26 26 H 1.48496 * 109.47470 * 330.00739 * 23 21 19 27 27 C 1.46928 * 118.73789 * 306.38444 * 18 17 16 28 28 C 1.53047 * 109.45928 * 299.97246 * 15 4 3 29 29 H 4.40640 * 5.51363 * 179.97438 * 4 1 2 30 30 H 1.09005 * 109.46371 * 193.83803 * 3 2 1 31 31 H 1.09003 * 109.47347 * 73.83984 * 3 2 1 32 32 H 1.09000 * 109.46847 * 299.99718 * 7 5 4 33 33 H 1.08996 * 109.47097 * 59.99931 * 7 5 4 34 34 H 1.09004 * 109.47330 * 299.99839 * 8 7 5 35 35 H 1.08996 * 109.47356 * 59.99950 * 8 7 5 36 36 H 1.07992 * 128.01033 * 0.02562 * 10 9 8 37 37 H 1.09010 * 109.47152 * 180.29761 * 12 11 10 38 38 H 1.09000 * 109.47334 * 300.29479 * 12 11 10 39 39 H 1.08997 * 109.47652 * 60.29548 * 12 11 10 40 40 H 1.08999 * 109.45823 * 180.02562 * 15 4 3 41 41 H 1.08992 * 109.49915 * 298.56691 * 16 15 4 42 42 H 1.08999 * 109.50058 * 58.66577 * 16 15 4 43 43 H 1.09001 * 109.59905 * 294.86857 * 17 16 15 44 44 H 1.08996 * 109.70595 * 174.51005 * 17 16 15 45 45 H 0.97005 * 120.00036 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.58614 * 293.82060 * 27 18 17 47 47 H 1.09008 * 109.70055 * 173.46518 * 27 18 17 48 48 H 1.09002 * 109.49715 * 301.33827 * 28 15 4 49 49 H 1.09004 * 109.49210 * 61.39975 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9557 0.9963 5 6 3.3601 -2.2376 0.6461 6 8 3.7600 -3.0305 1.4721 7 6 3.1086 -2.6871 -0.7701 8 6 3.4403 -4.1752 -0.8993 9 6 3.1883 -4.6249 -2.3154 10 6 4.1102 -5.2596 -3.1792 11 6 3.4071 -5.4572 -4.3200 12 6 3.9050 -6.1061 -5.5857 13 8 2.1826 -4.9572 -4.1025 14 7 2.0803 -4.5009 -2.9875 15 6 3.3787 -0.5188 2.3732 16 6 2.0768 0.0116 2.9779 17 6 2.3277 0.4351 4.4287 18 7 3.4401 1.3945 4.4554 19 6 3.2950 2.6142 5.0607 20 1 2.3208 3.0771 5.1163 21 6 4.4001 3.2557 5.6031 22 7 5.5035 2.5785 5.8400 23 14 4.3211 5.0801 5.9965 24 1 3.8407 5.2657 7.3894 25 1 5.6740 5.6759 5.8561 26 1 3.3857 5.7491 5.0571 27 6 4.7112 1.0202 3.8207 28 6 4.4336 0.5901 2.3769 29 1 -1.0498 -0.0001 0.0003 30 1 3.0088 0.9988 0.2458 31 1 3.0095 -0.2852 -0.9871 32 1 2.0604 -2.5257 -1.0218 33 1 3.7382 -2.1138 -1.4505 34 1 4.4884 -4.3370 -0.6474 35 1 2.8105 -4.7482 -0.2189 36 1 5.1365 -5.5271 -2.9757 37 1 3.1069 -6.1143 -6.3281 38 1 4.7550 -5.5438 -5.9722 39 1 4.2133 -7.1296 -5.3724 40 1 3.7367 -1.3621 2.9637 41 1 1.7319 0.8706 2.4025 42 1 1.3188 -0.7712 2.9536 43 1 2.5854 -0.4398 5.0255 44 1 1.4313 0.9034 4.8351 45 1 6.2759 3.0269 6.2187 46 1 5.1633 0.1930 4.3680 47 1 5.3889 1.8741 3.8237 48 1 5.3532 0.2188 1.9247 49 1 4.0663 1.4434 1.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699782847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:42 Heat of formation + Delta-G solvation = 98.710177 kcal Electronic energy + Delta-G solvation = -30037.655410 eV Core-core repulsion = 25970.400503 eV Total energy + Delta-G solvation = -4067.254907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -45.19126 -40.18795 -37.60902 -35.67594 -35.51027 -33.87578 -33.12310 -32.23854 -31.59178 -30.12518 -29.57607 -28.17913 -27.16112 -26.06581 -24.54052 -23.30231 -22.19912 -21.91677 -20.13419 -19.55413 -19.20595 -18.03439 -17.83774 -17.54392 -16.97430 -16.72101 -16.05441 -15.72534 -14.89519 -14.75181 -14.46715 -14.08020 -13.99144 -13.74863 -13.70075 -13.60784 -13.24848 -13.23923 -13.10991 -12.95352 -12.71801 -12.54044 -12.35938 -12.26815 -11.78298 -11.51908 -11.17840 -11.12498 -10.97333 -10.72073 -10.53962 -10.40709 -10.29733 -10.17546 -10.14066 -10.04852 -9.81013 -9.69817 -9.61839 -9.44342 -8.62058 -8.39719 -6.67989 -5.79255 -3.21553 1.17114 1.94026 2.47288 2.71202 2.81469 2.83143 3.35474 3.38032 3.44102 3.46302 3.91450 4.10735 4.36055 4.49351 4.56573 4.66435 4.76592 4.85902 4.92554 4.94534 5.02236 5.16020 5.28728 5.30878 5.32619 5.39894 5.44948 5.49165 5.52291 5.60912 5.68924 5.75569 5.88644 5.90688 5.91692 6.08463 6.21581 6.32922 6.51271 6.56139 6.62171 6.78211 6.87475 6.97754 7.32774 7.47451 7.60440 7.65153 7.79420 8.01990 8.23478 8.44656 9.20828 9.84033 10.41223 11.29534 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.002099 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.060502 B =13339.279462 C =13779.436856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.203 4.203 3 C 0.214 3.786 4 N -0.601 5.601 5 C 0.517 3.483 6 O -0.538 6.538 7 C -0.136 4.136 8 C -0.026 4.026 9 C 0.024 3.976 10 C -0.231 4.231 11 C -0.036 4.036 12 C -0.074 4.074 13 O 0.098 5.902 14 N -0.363 5.363 15 C 0.145 3.855 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.215 0.785 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.019 0.981 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -14.263 -23.264 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.092 3.908 4 N -0.332 5.332 5 C 0.305 3.695 6 O -0.415 6.415 7 C -0.177 4.177 8 C -0.064 4.064 9 C -0.135 4.135 10 C -0.253 4.253 11 C -0.100 4.100 12 C -0.132 4.132 13 O 0.031 5.969 14 N -0.067 5.067 15 C 0.043 3.957 16 C -0.175 4.175 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.232 0.768 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.189 0.811 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.121 -14.102 -22.440 26.822 hybrid contribution 0.527 0.786 0.224 0.972 sum -3.595 -13.317 -22.216 26.150 Atomic orbital electron populations 1.24896 0.95887 0.99778 0.99975 1.23520 0.94886 1.01130 1.00845 1.18408 0.83827 0.95739 0.92860 1.48277 1.64559 1.08793 1.11586 1.20528 0.77070 0.81796 0.90136 1.90699 1.45994 1.52184 1.52663 1.21670 1.04410 0.96686 0.94895 1.19746 1.04241 0.94629 0.87785 1.23626 0.89767 1.00875 0.99220 1.22451 1.02590 1.07164 0.93074 1.24523 0.85622 1.00553 0.99258 1.20338 1.01853 1.00295 0.90687 1.84834 1.30707 1.55669 1.25676 1.73849 1.23052 1.17275 0.92573 1.21256 0.96340 0.98206 0.79890 1.22349 0.95750 0.99805 0.99585 1.20873 0.92323 0.92831 0.91911 1.44078 1.09353 1.14546 1.63453 1.19158 0.94787 0.93695 1.30496 0.91733 1.25053 0.97465 0.98658 0.98486 1.70029 1.03921 1.34324 1.46385 0.86315 0.76866 0.85462 0.78231 1.21395 1.21568 1.20526 1.20746 0.88747 0.99542 0.86177 1.22589 0.96862 0.96880 1.02302 0.76769 0.87323 0.88521 0.88418 0.88826 0.88612 0.89014 0.81105 0.89918 0.89143 0.89186 0.88461 0.91999 0.93164 0.96283 0.92545 0.93607 0.96119 0.89106 0.92877 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 19.25 29.55 0.57 -1.66 16 2 C -0.20 -2.62 11.92 -37.12 -0.44 -3.06 16 3 C 0.21 2.61 5.15 -6.83 -0.04 2.58 16 4 N -0.60 -8.90 2.37 -169.37 -0.40 -9.30 16 5 C 0.52 7.66 7.67 -10.99 -0.08 7.58 16 6 O -0.54 -9.83 15.31 5.56 0.09 -9.74 16 7 C -0.14 -1.53 4.23 -27.88 -0.12 -1.65 16 8 C -0.03 -0.28 5.10 -27.88 -0.14 -0.42 16 9 C 0.02 0.25 6.59 -82.10 -0.54 -0.29 16 10 C -0.23 -1.90 11.05 -39.38 -0.44 -2.34 16 11 C -0.04 -0.27 7.49 -35.30 -0.26 -0.53 16 12 C -0.07 -0.23 10.45 36.00 0.38 0.14 16 13 O 0.10 1.00 11.20 17.18 0.19 1.19 16 14 N -0.36 -4.33 12.06 33.42 0.40 -3.92 16 15 C 0.14 2.58 2.48 -67.89 -0.17 2.41 16 16 C -0.13 -2.47 4.73 -26.61 -0.13 -2.59 16 17 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 18 N -0.59 -14.81 2.99 -172.32 -0.52 -15.33 16 19 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 20 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 23 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 28 C -0.15 -2.76 5.31 -26.61 -0.14 -2.90 16 29 H 0.22 1.86 7.80 -54.10 -0.42 1.44 16 30 H 0.11 1.34 6.46 -51.93 -0.34 1.00 16 31 H 0.10 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.10 1.13 7.95 -51.93 -0.41 0.72 16 33 H 0.09 0.88 7.40 -51.93 -0.38 0.49 16 34 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 38 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 41 H 0.06 1.15 7.02 -51.93 -0.36 0.78 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.39 6.07 -51.92 -0.31 2.08 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -33.44 401.90 -7.88 -41.31 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.46 Total: 1.18 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.83 Total: -2.52 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.11 Total: -54.05 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.28 Total: -8.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.44 -7.88 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699782847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.022 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds