Wall clock time and date at job start Wed Apr 1 2020 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47227 * 313.83674 * 3 2 1 5 5 C 1.34774 * 120.00125 * 90.00392 * 4 3 2 6 6 O 1.21278 * 120.00221 * 180.27341 * 5 4 3 7 7 C 1.50702 * 119.99805 * 359.97438 * 5 4 3 8 8 C 1.53001 * 109.47020 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47020 * 179.97438 * 8 7 5 10 10 C 1.41380 * 126.79896 * 124.71098 * 9 8 7 11 11 C 1.35452 * 103.98176 * 179.88833 * 10 9 8 12 12 C 1.50698 * 126.77642 * 180.14127 * 11 10 9 13 13 O 1.34040 * 106.44495 * 0.36548 * 11 10 9 14 14 N 1.20914 * 111.57155 * 359.75161 * 13 11 10 15 15 C 1.46503 * 120.00044 * 270.00407 * 4 3 2 16 16 C 1.53037 * 109.45926 * 60.02603 * 15 4 3 17 17 C 1.53194 * 109.31064 * 178.60316 * 16 15 4 18 18 N 1.46924 * 108.76714 * 54.65518 * 17 16 15 19 19 C 1.36937 * 120.63218 * 126.40613 * 18 17 16 20 20 H 1.08000 * 119.99922 * 331.82876 * 19 18 17 21 21 C 1.38811 * 120.00160 * 151.82383 * 19 18 17 22 22 N 1.31616 * 119.99922 * 343.07554 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 163.07170 * 21 19 18 24 24 H 1.48506 * 109.46868 * 90.00398 * 23 21 19 25 25 H 1.48495 * 109.47419 * 210.00318 * 23 21 19 26 26 H 1.48496 * 109.47470 * 330.00739 * 23 21 19 27 27 C 1.46928 * 118.73789 * 306.38444 * 18 17 16 28 28 C 1.53047 * 109.45928 * 299.97246 * 15 4 3 29 29 H 4.40640 * 5.51363 * 179.97438 * 4 1 2 30 30 H 1.09005 * 109.46371 * 193.83803 * 3 2 1 31 31 H 1.09003 * 109.47347 * 73.83984 * 3 2 1 32 32 H 1.09000 * 109.46847 * 299.99718 * 7 5 4 33 33 H 1.08996 * 109.47097 * 59.99931 * 7 5 4 34 34 H 1.09004 * 109.47330 * 299.99839 * 8 7 5 35 35 H 1.08996 * 109.47356 * 59.99950 * 8 7 5 36 36 H 1.07992 * 128.01033 * 0.02562 * 10 9 8 37 37 H 1.09010 * 109.47152 * 180.29761 * 12 11 10 38 38 H 1.09000 * 109.47334 * 300.29479 * 12 11 10 39 39 H 1.08997 * 109.47652 * 60.29548 * 12 11 10 40 40 H 1.08999 * 109.45823 * 180.02562 * 15 4 3 41 41 H 1.08992 * 109.49915 * 298.56691 * 16 15 4 42 42 H 1.08999 * 109.50058 * 58.66577 * 16 15 4 43 43 H 1.09001 * 109.59905 * 294.86857 * 17 16 15 44 44 H 1.08996 * 109.70595 * 174.51005 * 17 16 15 45 45 H 0.97005 * 120.00036 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.58614 * 293.82060 * 27 18 17 47 47 H 1.09008 * 109.70055 * 173.46518 * 27 18 17 48 48 H 1.09002 * 109.49715 * 301.33827 * 28 15 4 49 49 H 1.09004 * 109.49210 * 61.39975 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9557 0.9963 5 6 3.3601 -2.2376 0.6461 6 8 3.7600 -3.0305 1.4721 7 6 3.1086 -2.6871 -0.7701 8 6 3.4403 -4.1752 -0.8993 9 6 3.1883 -4.6249 -2.3154 10 6 4.1102 -5.2596 -3.1792 11 6 3.4071 -5.4572 -4.3200 12 6 3.9050 -6.1061 -5.5857 13 8 2.1826 -4.9572 -4.1025 14 7 2.0803 -4.5009 -2.9875 15 6 3.3787 -0.5188 2.3732 16 6 2.0768 0.0116 2.9779 17 6 2.3277 0.4351 4.4287 18 7 3.4401 1.3945 4.4554 19 6 3.2950 2.6142 5.0607 20 1 2.3208 3.0771 5.1163 21 6 4.4001 3.2557 5.6031 22 7 5.5035 2.5785 5.8400 23 14 4.3211 5.0801 5.9965 24 1 3.8407 5.2657 7.3894 25 1 5.6740 5.6759 5.8561 26 1 3.3857 5.7491 5.0571 27 6 4.7112 1.0202 3.8207 28 6 4.4336 0.5901 2.3769 29 1 -1.0498 -0.0001 0.0003 30 1 3.0088 0.9988 0.2458 31 1 3.0095 -0.2852 -0.9871 32 1 2.0604 -2.5257 -1.0218 33 1 3.7382 -2.1138 -1.4505 34 1 4.4884 -4.3370 -0.6474 35 1 2.8105 -4.7482 -0.2189 36 1 5.1365 -5.5271 -2.9757 37 1 3.1069 -6.1143 -6.3281 38 1 4.7550 -5.5438 -5.9722 39 1 4.2133 -7.1296 -5.3724 40 1 3.7367 -1.3621 2.9637 41 1 1.7319 0.8706 2.4025 42 1 1.3188 -0.7712 2.9536 43 1 2.5854 -0.4398 5.0255 44 1 1.4313 0.9034 4.8351 45 1 6.2759 3.0269 6.2187 46 1 5.1633 0.1930 4.3680 47 1 5.3889 1.8741 3.8237 48 1 5.3532 0.2188 1.9247 49 1 4.0663 1.4434 1.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699782847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:41 Heat of formation + Delta-G solvation = 80.301407 kcal Electronic energy + Delta-G solvation = -30038.453674 eV Core-core repulsion = 25970.400503 eV Total energy + Delta-G solvation = -4068.053171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -45.89980 -41.43975 -39.16254 -37.07739 -36.35752 -34.72040 -34.36462 -33.52036 -32.67832 -31.75554 -31.30128 -28.62886 -28.23641 -27.44625 -26.04857 -24.03615 -23.91746 -23.52214 -21.06693 -20.83309 -20.50060 -19.14499 -18.61481 -18.58112 -18.33779 -17.93624 -17.36976 -16.78914 -16.73284 -15.73025 -15.52096 -15.41744 -15.29208 -14.98791 -14.81007 -14.62187 -14.42889 -14.26480 -14.18131 -14.03094 -13.91147 -13.64350 -13.32845 -13.20209 -13.09515 -13.02307 -12.69423 -12.59582 -12.57423 -12.19508 -12.05388 -11.95711 -11.87137 -11.55923 -11.42688 -11.34309 -11.22088 -10.98683 -10.76412 -10.57931 -10.21449 -9.85290 -8.72437 -7.88803 -5.34825 0.55242 1.22681 1.39956 1.47179 1.48336 1.57608 1.58527 1.90458 2.25934 2.32316 2.50773 3.14105 3.27127 3.41566 3.49797 3.60065 3.64256 3.84875 3.98193 4.01696 4.06295 4.16401 4.19610 4.28971 4.37456 4.41801 4.43797 4.55327 4.58224 4.60554 4.76028 4.78033 4.81646 4.82588 4.91033 4.97009 4.99029 5.00743 5.07144 5.11943 5.12603 5.26190 5.30170 5.42775 5.50146 5.62546 5.68707 6.30381 6.37379 6.68565 7.04982 7.12701 7.34508 7.82041 8.35503 9.18320 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.002099 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.060502 B =13339.279462 C =13779.436856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.234 4.234 3 C 0.212 3.788 4 N -0.599 5.599 5 C 0.515 3.485 6 O -0.578 6.578 7 C -0.121 4.121 8 C -0.021 4.021 9 C 0.012 3.988 10 C -0.241 4.241 11 C -0.027 4.027 12 C -0.074 4.074 13 O 0.085 5.915 14 N -0.395 5.395 15 C 0.155 3.845 16 C -0.115 4.115 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.181 3.819 28 C -0.128 4.128 29 H 0.241 0.759 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.194 0.806 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.007 0.993 44 H 0.059 0.941 45 H 0.251 0.749 46 H -0.008 1.008 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 -14.207 -26.182 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.235 4.235 3 C 0.090 3.910 4 N -0.329 5.329 5 C 0.305 3.695 6 O -0.457 6.457 7 C -0.162 4.162 8 C -0.060 4.060 9 C -0.146 4.146 10 C -0.262 4.262 11 C -0.091 4.091 12 C -0.131 4.131 13 O 0.020 5.980 14 N -0.101 5.101 15 C 0.052 3.948 16 C -0.155 4.155 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.797 3.203 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.194 1.194 27 C 0.055 3.945 28 C -0.168 4.168 29 H 0.257 0.743 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.211 0.789 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.025 0.975 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.010 0.990 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.755 -14.051 -25.404 29.418 hybrid contribution 0.670 0.675 1.117 1.467 sum -4.086 -13.376 -24.287 28.026 Atomic orbital electron populations 1.25662 0.96805 0.98549 0.98759 1.23779 0.95470 1.02271 1.01997 1.18650 0.83836 0.95036 0.93434 1.48179 1.64518 1.09501 1.10686 1.21146 0.75926 0.81204 0.91207 1.90687 1.47753 1.53212 1.54079 1.21601 1.04897 0.97165 0.92493 1.19647 1.04146 0.94171 0.87987 1.23695 0.90363 1.01455 0.99094 1.22760 1.03446 1.07203 0.92794 1.25291 0.84293 0.99016 1.00460 1.20582 1.02624 1.00996 0.88872 1.84788 1.32112 1.55945 1.25144 1.73838 1.24021 1.18821 0.93432 1.20832 0.95577 0.96690 0.81730 1.22096 0.96170 1.00090 0.97149 1.20979 0.91348 0.91751 0.94104 1.44316 1.10271 1.14744 1.63725 1.19487 0.94964 0.94652 1.30156 0.91478 1.25832 0.97209 1.02682 0.98842 1.70191 1.04499 1.35846 1.47580 0.85263 0.76708 0.80413 0.77957 1.21308 1.21789 1.19350 1.20533 0.87942 0.97276 0.88787 1.22314 0.98008 0.97632 0.98850 0.74264 0.87290 0.85325 0.88325 0.86262 0.88107 0.90743 0.78904 0.88990 0.87334 0.87491 0.91136 0.91527 0.92198 0.97461 0.92224 0.94021 0.99036 0.91925 0.91515 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 19.25 74.32 1.43 -2.41 16 2 C -0.23 -5.53 11.92 31.13 0.37 -5.15 16 3 C 0.21 4.67 5.15 84.58 0.44 5.11 16 4 N -0.60 -16.98 2.37 -808.15 -1.91 -18.90 16 5 C 0.52 14.85 7.67 87.66 0.67 15.53 16 6 O -0.58 -21.29 15.31 -3.02 -0.05 -21.33 16 7 C -0.12 -2.54 4.23 29.85 0.13 -2.41 16 8 C -0.02 -0.44 5.10 29.85 0.15 -0.29 16 9 C 0.01 0.24 6.59 43.58 0.29 0.53 16 10 C -0.24 -3.48 11.05 22.40 0.25 -3.23 16 11 C -0.03 -0.35 7.49 25.04 0.19 -0.16 16 12 C -0.07 -0.24 10.45 71.24 0.74 0.51 16 13 O 0.09 1.64 11.20 71.65 0.80 2.44 16 14 N -0.39 -9.07 12.06 -49.57 -0.60 -9.67 16 15 C 0.15 5.50 2.48 45.02 0.11 5.61 16 16 C -0.12 -4.15 4.73 30.67 0.15 -4.00 16 17 C 0.14 6.30 6.52 86.36 0.56 6.86 16 18 N -0.61 -30.99 2.99 -699.10 -2.09 -33.09 16 19 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 20 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 21 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 22 N -0.94 -55.67 11.19 21.65 0.24 -55.43 16 23 Si 0.97 44.75 29.59 68.60 2.03 46.78 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C 0.18 8.88 5.30 86.36 0.46 9.34 16 28 C -0.13 -4.82 5.31 30.67 0.16 -4.65 16 29 H 0.24 3.44 7.80 -4.43 -0.03 3.41 16 30 H 0.11 2.42 6.46 -2.38 -0.02 2.40 16 31 H 0.13 1.98 6.44 -2.39 -0.02 1.97 16 32 H 0.10 2.12 7.95 -2.39 -0.02 2.10 16 33 H 0.12 1.89 7.40 -2.39 -0.02 1.88 16 34 H 0.10 1.98 8.10 -2.38 -0.02 1.96 16 35 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 38 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.07 2.93 6.90 -2.39 -0.02 2.91 16 41 H 0.07 2.36 7.02 -2.39 -0.02 2.35 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 45 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 46 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H 0.06 3.42 6.07 -2.38 -0.01 3.40 16 48 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.07 2.45 6.72 -2.38 -0.02 2.43 16 Total: -1.00 -74.68 401.90 6.69 -67.99 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.94 Total: 16.11 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 7.32 Total: 5.08 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -4.36 Total: -117.07 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.76 Total: -18.89 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -74.68 6.69 -67.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699782847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.292 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds