Wall clock time and date at job start Wed Apr 1 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 119.99870 * 2 1 4 4 O 1.21550 * 119.99987 * 359.97438 * 3 2 1 5 5 C 1.47858 * 119.99760 * 179.97438 * 3 2 1 6 6 C 1.39711 * 120.07448 * 359.97186 * 5 3 2 7 7 C 1.38055 * 120.14138 * 180.02562 * 6 5 3 8 8 C 1.38096 * 120.30004 * 359.72665 * 7 6 5 9 9 C 1.39665 * 120.14367 * 0.55274 * 8 7 6 10 10 C 1.47857 * 120.07398 * 179.71994 * 9 8 7 11 11 O 1.21550 * 120.00048 * 144.41833 * 10 9 8 12 12 N 1.34782 * 120.00212 * 324.42007 * 10 9 8 13 13 C 1.46915 * 120.63321 * 174.39714 * 12 10 9 14 14 C 1.53194 * 108.77923 * 126.36882 * 13 12 10 15 15 C 1.53040 * 109.30944 * 54.63644 * 14 13 12 16 16 C 1.52998 * 109.46112 * 178.63349 * 15 14 13 17 17 N 1.46497 * 109.46281 * 58.65761 * 15 14 13 18 18 C 1.36930 * 120.00189 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00248 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00021 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00025 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46865 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47293 * 299.99670 * 22 20 18 25 25 H 1.48504 * 109.47189 * 60.00131 * 22 20 18 26 26 C 1.53046 * 109.52553 * 298.64361 * 15 14 13 27 27 C 1.46926 * 120.62802 * 354.37332 * 12 10 9 28 28 C 1.39297 * 120.07207 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47055 * 60.00279 * 1 2 3 30 30 H 1.08994 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47727 * 300.00999 * 1 2 3 32 32 H 0.96995 * 120.00090 * 179.97438 * 2 1 3 33 33 H 1.07995 * 119.92885 * 0.04987 * 6 5 3 34 34 H 1.08009 * 119.84618 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.92871 * 180.29606 * 8 7 6 36 36 H 1.09010 * 109.58965 * 6.58257 * 13 12 10 37 37 H 1.09003 * 109.70627 * 246.23065 * 13 12 10 38 38 H 1.09003 * 109.49595 * 294.69071 * 14 13 12 39 39 H 1.08994 * 109.52901 * 174.60163 * 14 13 12 40 40 H 1.09001 * 109.46737 * 300.02773 * 16 15 14 41 41 H 1.08998 * 109.47562 * 60.02420 * 16 15 14 42 42 H 1.08996 * 109.47459 * 180.02562 * 16 15 14 43 43 H 0.97003 * 119.99633 * 359.97206 * 17 15 14 44 44 H 0.96998 * 120.00060 * 0.02562 * 21 20 18 45 45 H 1.09005 * 109.49900 * 181.31230 * 26 15 14 46 46 H 1.09003 * 109.49447 * 301.40633 * 26 15 14 47 47 H 1.09005 * 109.58905 * 353.42095 * 27 12 10 48 48 H 1.09006 * 109.58321 * 113.69538 * 27 12 10 49 49 H 1.07994 * 120.14548 * 359.94762 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1673 0.0006 6 6 4.3175 -0.0418 0.0017 7 6 5.6981 -0.0434 0.0028 8 6 6.3962 1.1481 -0.0030 9 6 5.7088 2.3638 0.0018 10 6 6.4579 3.6386 0.0019 11 8 6.0257 4.5975 -0.6073 12 7 7.6200 3.7373 0.6774 13 6 8.4367 4.9553 0.5879 14 6 8.7196 5.4645 2.0048 15 6 9.3537 4.3417 2.8289 16 6 9.6690 4.8567 4.2347 17 7 10.5917 3.9005 2.1817 18 6 11.3377 2.8981 2.7419 19 1 11.0136 2.4330 3.6611 20 6 12.5105 2.4798 2.1283 21 7 12.9052 3.0463 1.0078 22 14 13.5284 1.1128 2.8930 23 1 14.7232 0.8545 2.0498 24 1 13.9610 1.5198 4.2539 25 1 12.7098 -0.1230 2.9826 26 6 8.3805 3.1643 2.9237 27 6 8.0939 2.6291 1.5176 28 6 4.3155 2.3727 0.0011 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.9500 -0.8400 0.0004 33 1 3.7776 -0.9771 0.0014 34 1 6.2345 -0.9809 0.0032 35 1 7.4762 1.1398 -0.0069 36 1 7.8959 5.7176 0.0269 37 1 9.3777 4.7308 0.0857 38 1 7.7857 5.7762 2.4726 39 1 9.4035 6.3119 1.9576 40 1 10.3625 5.6950 4.1674 41 1 8.7480 5.1850 4.7165 42 1 10.1211 4.0573 4.8217 43 1 10.8830 4.3186 1.3563 44 1 12.3769 3.7564 0.6110 45 1 8.8232 2.3742 3.5302 46 1 7.4498 3.4978 3.3828 47 1 7.3269 1.8563 1.5700 48 1 9.0054 2.2107 1.0906 49 1 3.7791 3.3100 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717304462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:56 Heat of formation + Delta-G solvation = -17.907956 kcal Electronic energy + Delta-G solvation = -30805.555578 eV Core-core repulsion = 26733.243730 eV Total energy + Delta-G solvation = -4072.311849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.83429 -39.97471 -38.44450 -37.60795 -35.04165 -34.75825 -32.82138 -31.98402 -31.34804 -30.53032 -28.79870 -27.84850 -27.28579 -24.61666 -23.93792 -23.44918 -22.86992 -22.23727 -21.04903 -20.03775 -18.89825 -17.97629 -17.08218 -16.82556 -16.58448 -16.13681 -15.84895 -15.56796 -15.36174 -14.84738 -14.57416 -14.40341 -14.18251 -13.94749 -13.66585 -13.62462 -13.51523 -13.45022 -13.05428 -12.73217 -12.65817 -12.60449 -12.30778 -11.90169 -11.65593 -11.62224 -11.41545 -11.28311 -10.87074 -10.81237 -10.57862 -10.33136 -10.32433 -10.01986 -9.91364 -9.75442 -9.56635 -9.27557 -9.14442 -9.11348 -8.95789 -8.33310 -7.07875 -6.12878 -3.13775 0.43333 0.87584 2.40225 2.75511 2.95878 3.17059 3.46249 3.49364 3.64100 3.67029 4.30181 4.35450 4.56864 4.61497 4.70626 4.79695 4.91088 5.11535 5.11749 5.15133 5.21553 5.25891 5.36988 5.43574 5.47437 5.53335 5.64031 5.65693 5.68085 5.88613 5.93937 5.94380 5.97327 5.99881 6.05651 6.07290 6.15776 6.30292 6.33249 6.40147 6.46506 6.48491 6.65418 6.73315 6.91431 6.97758 7.06249 7.60590 7.77397 7.85090 8.26322 8.71294 9.17715 10.04435 10.20536 11.34694 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002755 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.500819 B =10161.612776 C =11056.431759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.561 3.439 4 O -0.531 6.531 5 C -0.149 4.149 6 C -0.068 4.068 7 C -0.132 4.132 8 C -0.060 4.060 9 C -0.130 4.130 10 C 0.555 3.445 11 O -0.544 6.544 12 N -0.592 5.592 13 C 0.117 3.883 14 C -0.131 4.131 15 C 0.203 3.797 16 C -0.149 4.149 17 N -0.728 5.728 18 C -0.322 4.322 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.944 5.944 22 Si 1.075 2.925 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.296 1.296 26 C -0.133 4.133 27 C 0.103 3.897 28 C -0.006 4.006 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.401 0.599 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.056 0.944 43 H 0.366 0.634 44 H 0.254 0.746 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.362 -8.801 -0.219 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.348 3.652 4 O -0.408 6.408 5 C -0.152 4.152 6 C -0.087 4.087 7 C -0.150 4.150 8 C -0.078 4.078 9 C -0.133 4.133 10 C 0.343 3.657 11 O -0.423 6.423 12 N -0.323 5.323 13 C -0.005 4.005 14 C -0.170 4.170 15 C 0.111 3.889 16 C -0.208 4.208 17 N -0.372 5.372 18 C -0.453 4.453 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.589 5.589 22 Si 0.906 3.094 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.224 1.224 26 C -0.174 4.174 27 C -0.019 4.019 28 C -0.026 4.026 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.697 -8.554 -0.514 20.567 hybrid contribution -0.943 0.452 0.167 1.059 sum -19.641 -8.101 -0.347 21.249 Atomic orbital electron populations 1.21561 0.79093 1.02345 1.02613 1.45689 1.07948 1.08561 1.76423 1.18264 0.87149 0.83756 0.76004 1.90801 1.69852 1.31121 1.49071 1.19763 0.92670 0.94257 1.08540 1.21410 0.94730 0.96668 0.95847 1.21095 0.93760 0.98530 1.01655 1.21920 1.01430 0.91393 0.93085 1.19937 0.93870 0.93852 1.05650 1.18220 0.80623 0.87314 0.79501 1.90763 1.68027 1.38637 1.44868 1.47994 1.20589 1.17907 1.45841 1.21576 0.94901 0.86341 0.97661 1.22113 1.00743 0.98773 0.95346 1.19468 0.86886 0.90883 0.91643 1.22191 0.99415 1.01146 0.98057 1.42516 1.23205 1.43529 1.27905 1.19902 1.05249 1.12652 1.07533 0.91756 1.25645 0.96750 1.03973 0.97847 1.70888 1.41171 1.27177 1.19703 0.83303 0.76302 0.75018 0.74758 1.21196 1.22431 1.22378 1.22287 0.98767 1.00670 0.95653 1.22209 1.00060 0.88126 0.91472 1.21276 0.92207 0.98310 0.90788 0.92013 0.90487 0.92013 0.76366 0.85382 0.84394 0.83719 0.89588 0.90772 0.91668 0.90791 0.93252 0.94523 0.92452 0.79934 0.93421 0.90491 0.93229 0.90217 0.89151 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.84 0.64 1.17 16 2 N -0.73 -5.44 5.66 -68.04 -0.39 -5.82 16 3 C 0.56 6.50 7.77 -12.32 -0.10 6.40 16 4 O -0.53 -8.29 16.34 5.32 0.09 -8.20 16 5 C -0.15 -1.67 5.87 -105.02 -0.62 -2.28 16 6 C -0.07 -0.55 9.54 -39.10 -0.37 -0.92 16 7 C -0.13 -1.16 10.02 -39.70 -0.40 -1.56 16 8 C -0.06 -0.69 7.35 -39.10 -0.29 -0.97 16 9 C -0.13 -1.82 5.28 -105.02 -0.55 -2.37 16 10 C 0.56 9.33 7.38 -12.32 -0.09 9.24 16 11 O -0.54 -10.74 16.24 5.32 0.09 -10.65 16 12 N -0.59 -9.63 2.97 -173.89 -0.52 -10.14 16 13 C 0.12 1.95 6.17 -3.72 -0.02 1.93 16 14 C -0.13 -2.12 4.96 -26.61 -0.13 -2.25 16 15 C 0.20 3.65 0.74 -131.78 -0.10 3.55 16 16 C -0.15 -2.61 8.44 37.16 0.31 -2.30 16 17 N -0.73 -16.01 4.14 -47.19 -0.20 -16.21 16 18 C -0.32 -8.04 8.68 -15.06 -0.13 -8.17 16 19 H 0.06 1.59 6.70 -52.49 -0.35 1.24 16 20 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 21 N -0.94 -27.44 13.70 55.49 0.76 -26.68 16 22 Si 1.07 24.45 29.92 -169.99 -5.09 19.37 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.30 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.13 -2.21 4.70 -26.63 -0.13 -2.33 16 27 C 0.10 1.61 4.52 -3.73 -0.02 1.60 16 28 C -0.01 -0.08 9.15 -38.78 -0.35 -0.44 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.40 1.70 6.85 -40.82 -0.28 1.42 16 33 H 0.13 0.55 6.39 -52.49 -0.34 0.22 16 34 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.15 1.68 6.05 -52.49 -0.32 1.36 16 36 H 0.09 1.43 7.00 -51.92 -0.36 1.07 16 37 H 0.07 1.31 6.94 -51.93 -0.36 0.95 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.08 7.27 -51.93 -0.38 0.70 16 43 H 0.37 8.55 5.30 -40.82 -0.22 8.34 16 44 H 0.25 7.29 6.77 -40.82 -0.28 7.02 16 45 H 0.08 1.34 7.32 -51.93 -0.38 0.96 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.07 4.46 -51.93 -0.23 0.84 16 48 H 0.09 1.64 7.65 -51.93 -0.40 1.24 16 49 H 0.14 2.20 7.59 -52.49 -0.40 1.80 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -33.62 386.53 -8.75 -42.36 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.89 Total: 11.15 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.44 Total: -1.00 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.34 Total: -58.85 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.17 Total: -18.86 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.09 Total: 19.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.62 -8.75 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717304462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.457 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds