Wall clock time and date at job start Wed Apr 1 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 119.99870 * 2 1 4 4 O 1.21550 * 119.99987 * 359.97438 * 3 2 1 5 5 C 1.47858 * 119.99760 * 179.97438 * 3 2 1 6 6 C 1.39711 * 120.07448 * 359.97186 * 5 3 2 7 7 C 1.38055 * 120.14138 * 180.02562 * 6 5 3 8 8 C 1.38096 * 120.30004 * 359.72665 * 7 6 5 9 9 C 1.39665 * 120.14367 * 0.55274 * 8 7 6 10 10 C 1.47857 * 120.07398 * 179.71994 * 9 8 7 11 11 O 1.21550 * 120.00048 * 144.41833 * 10 9 8 12 12 N 1.34782 * 120.00212 * 324.42007 * 10 9 8 13 13 C 1.46915 * 120.63321 * 174.39714 * 12 10 9 14 14 C 1.53194 * 108.77923 * 126.36882 * 13 12 10 15 15 C 1.53040 * 109.30944 * 54.63644 * 14 13 12 16 16 C 1.52998 * 109.46112 * 178.63349 * 15 14 13 17 17 N 1.46497 * 109.46281 * 58.65761 * 15 14 13 18 18 C 1.36930 * 120.00189 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00248 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00021 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00025 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46865 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47293 * 299.99670 * 22 20 18 25 25 H 1.48504 * 109.47189 * 60.00131 * 22 20 18 26 26 C 1.53046 * 109.52553 * 298.64361 * 15 14 13 27 27 C 1.46926 * 120.62802 * 354.37332 * 12 10 9 28 28 C 1.39297 * 120.07207 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47055 * 60.00279 * 1 2 3 30 30 H 1.08994 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47727 * 300.00999 * 1 2 3 32 32 H 0.96995 * 120.00090 * 179.97438 * 2 1 3 33 33 H 1.07995 * 119.92885 * 0.04987 * 6 5 3 34 34 H 1.08009 * 119.84618 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.92871 * 180.29606 * 8 7 6 36 36 H 1.09010 * 109.58965 * 6.58257 * 13 12 10 37 37 H 1.09003 * 109.70627 * 246.23065 * 13 12 10 38 38 H 1.09003 * 109.49595 * 294.69071 * 14 13 12 39 39 H 1.08994 * 109.52901 * 174.60163 * 14 13 12 40 40 H 1.09001 * 109.46737 * 300.02773 * 16 15 14 41 41 H 1.08998 * 109.47562 * 60.02420 * 16 15 14 42 42 H 1.08996 * 109.47459 * 180.02562 * 16 15 14 43 43 H 0.97003 * 119.99633 * 359.97206 * 17 15 14 44 44 H 0.96998 * 120.00060 * 0.02562 * 21 20 18 45 45 H 1.09005 * 109.49900 * 181.31230 * 26 15 14 46 46 H 1.09003 * 109.49447 * 301.40633 * 26 15 14 47 47 H 1.09005 * 109.58905 * 353.42095 * 27 12 10 48 48 H 1.09006 * 109.58321 * 113.69538 * 27 12 10 49 49 H 1.07994 * 120.14548 * 359.94762 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1673 0.0006 6 6 4.3175 -0.0418 0.0017 7 6 5.6981 -0.0434 0.0028 8 6 6.3962 1.1481 -0.0030 9 6 5.7088 2.3638 0.0018 10 6 6.4579 3.6386 0.0019 11 8 6.0257 4.5975 -0.6073 12 7 7.6200 3.7373 0.6774 13 6 8.4367 4.9553 0.5879 14 6 8.7196 5.4645 2.0048 15 6 9.3537 4.3417 2.8289 16 6 9.6690 4.8567 4.2347 17 7 10.5917 3.9005 2.1817 18 6 11.3377 2.8981 2.7419 19 1 11.0136 2.4330 3.6611 20 6 12.5105 2.4798 2.1283 21 7 12.9052 3.0463 1.0078 22 14 13.5284 1.1128 2.8930 23 1 14.7232 0.8545 2.0498 24 1 13.9610 1.5198 4.2539 25 1 12.7098 -0.1230 2.9826 26 6 8.3805 3.1643 2.9237 27 6 8.0939 2.6291 1.5176 28 6 4.3155 2.3727 0.0011 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.9500 -0.8400 0.0004 33 1 3.7776 -0.9771 0.0014 34 1 6.2345 -0.9809 0.0032 35 1 7.4762 1.1398 -0.0069 36 1 7.8959 5.7176 0.0269 37 1 9.3777 4.7308 0.0857 38 1 7.7857 5.7762 2.4726 39 1 9.4035 6.3119 1.9576 40 1 10.3625 5.6950 4.1674 41 1 8.7480 5.1850 4.7165 42 1 10.1211 4.0573 4.8217 43 1 10.8830 4.3186 1.3563 44 1 12.3769 3.7564 0.6110 45 1 8.8232 2.3742 3.5302 46 1 7.4498 3.4978 3.3828 47 1 7.3269 1.8563 1.5700 48 1 9.0054 2.2107 1.0906 49 1 3.7791 3.3100 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717304462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:55 Heat of formation + Delta-G solvation = -40.792391 kcal Electronic energy + Delta-G solvation = -30806.547922 eV Core-core repulsion = 26733.243730 eV Total energy + Delta-G solvation = -4073.304192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.94672 -41.02276 -39.63598 -38.83170 -36.31221 -35.82112 -34.49765 -33.14022 -32.23188 -31.74955 -30.55711 -29.24102 -27.97102 -25.92765 -25.41658 -24.73032 -24.06109 -23.40289 -21.99594 -21.19268 -20.19744 -19.23468 -18.81801 -17.95856 -17.44175 -17.16954 -17.04757 -16.71268 -16.41692 -16.25226 -15.85976 -15.56249 -15.37173 -15.29674 -15.07448 -14.81921 -14.65076 -14.45989 -14.19298 -14.11770 -13.78644 -13.36854 -13.26567 -13.15683 -12.92693 -12.84158 -12.72785 -12.57882 -12.52520 -12.25357 -12.17364 -11.88224 -11.75119 -11.48060 -11.28395 -11.04205 -10.94943 -10.80913 -10.34023 -10.17379 -9.96398 -9.72793 -8.97330 -8.21800 -5.16191 -0.43760 -0.05294 1.43048 1.63813 1.72255 1.74644 1.87701 1.92160 2.15389 2.71934 2.79153 3.28297 3.53464 3.56782 3.66977 3.77369 3.84305 3.85460 3.94844 4.05223 4.06664 4.18690 4.26492 4.33647 4.39021 4.52328 4.55721 4.60962 4.61558 4.68878 4.76611 4.82010 4.91494 4.94353 4.95201 4.97595 5.06224 5.09131 5.13742 5.20214 5.23632 5.27194 5.31772 5.47765 5.56075 5.67049 5.78427 6.29450 6.43868 6.63873 6.94420 7.11019 7.22437 8.13435 8.27087 9.29499 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002755 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.500819 B =10161.612776 C =11056.431759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.555 3.445 4 O -0.584 6.584 5 C -0.153 4.153 6 C -0.042 4.042 7 C -0.118 4.118 8 C -0.065 4.065 9 C -0.149 4.149 10 C 0.552 3.448 11 O -0.584 6.584 12 N -0.591 5.591 13 C 0.119 3.881 14 C -0.122 4.122 15 C 0.194 3.806 16 C -0.143 4.143 17 N -0.734 5.734 18 C -0.298 4.298 19 H 0.070 0.930 20 C -0.107 4.107 21 N -0.984 5.984 22 Si 1.117 2.883 23 H -0.304 1.304 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.129 4.129 27 C 0.112 3.888 28 C -0.025 4.025 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.421 0.579 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.357 0.643 44 H 0.242 0.758 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.081 -12.512 1.117 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.343 3.657 4 O -0.465 6.465 5 C -0.156 4.156 6 C -0.060 4.060 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.152 4.152 10 C 0.342 3.658 11 O -0.466 6.466 12 N -0.321 5.321 13 C -0.003 4.003 14 C -0.160 4.160 15 C 0.104 3.896 16 C -0.202 4.202 17 N -0.377 5.377 18 C -0.430 4.430 19 H 0.088 0.912 20 C -0.298 4.298 21 N -0.633 5.633 22 Si 0.945 3.055 23 H -0.231 1.231 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.169 4.169 27 C -0.009 4.009 28 C -0.045 4.045 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.069 0.931 32 H 0.259 0.741 33 H 0.196 0.804 34 H 0.195 0.805 35 H 0.160 0.840 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.190 0.810 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.126 0.874 48 H 0.083 0.917 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.462 -12.322 0.871 23.901 hybrid contribution -0.554 1.578 -0.239 1.689 sum -21.016 -10.744 0.632 23.611 Atomic orbital electron populations 1.21751 0.78024 1.04765 1.01588 1.45584 1.08669 1.08044 1.74153 1.18443 0.87388 0.84181 0.75714 1.90781 1.70740 1.33216 1.51796 1.19831 0.92654 0.94521 1.08639 1.21903 0.94661 0.97143 0.92312 1.21532 0.94059 0.98695 0.99218 1.21980 1.01407 0.91543 0.93482 1.19687 0.93717 0.93271 1.08529 1.18759 0.80479 0.88083 0.78497 1.90728 1.68987 1.40392 1.46450 1.48020 1.20463 1.17812 1.45832 1.21467 0.94178 0.86743 0.97953 1.22033 1.01220 0.98168 0.94617 1.19756 0.85784 0.92122 0.91958 1.22114 1.00481 1.00243 0.97368 1.42667 1.24313 1.43009 1.27687 1.20145 1.04417 1.11756 1.06646 0.91240 1.26803 0.98725 1.06152 0.98113 1.70991 1.42101 1.28563 1.21642 0.82727 0.74776 0.73921 0.74102 1.23053 1.21293 1.19967 1.22222 0.98931 0.99650 0.96095 1.22144 0.99828 0.88410 0.90561 1.21099 0.92181 0.98509 0.92728 0.93145 0.86267 0.93070 0.74097 0.80361 0.80497 0.84027 0.89936 0.92458 0.90217 0.90570 0.94244 0.91673 0.93786 0.81015 0.94735 0.91030 0.91364 0.87447 0.91725 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.70 127.77 1.37 2.14 16 2 N -0.71 -8.26 5.66 -487.46 -2.76 -11.02 16 3 C 0.55 12.16 7.77 86.79 0.67 12.84 16 4 O -0.58 -18.72 16.34 -3.87 -0.06 -18.78 16 5 C -0.15 -3.15 5.87 -20.12 -0.12 -3.26 16 6 C -0.04 -0.48 9.54 22.58 0.22 -0.27 16 7 C -0.12 -1.52 10.02 22.19 0.22 -1.30 16 8 C -0.07 -1.37 7.35 22.58 0.17 -1.21 16 9 C -0.15 -4.16 5.28 -20.12 -0.11 -4.26 16 10 C 0.55 19.17 7.38 86.79 0.64 19.81 16 11 O -0.58 -24.37 16.24 -3.87 -0.06 -24.43 16 12 N -0.59 -19.54 2.97 -822.35 -2.44 -21.98 16 13 C 0.12 4.10 6.17 86.37 0.53 4.63 16 14 C -0.12 -3.92 4.96 30.67 0.15 -3.76 16 15 C 0.19 6.84 0.74 3.63 0.00 6.85 16 16 C -0.14 -4.82 8.44 71.98 0.61 -4.21 16 17 N -0.73 -32.61 4.14 -303.23 -1.25 -33.86 16 18 C -0.30 -14.80 8.68 84.04 0.73 -14.07 16 19 H 0.07 3.36 6.70 -2.91 -0.02 3.34 16 20 C -0.11 -5.77 5.50 84.86 0.47 -5.30 16 21 N -0.98 -58.68 13.70 21.65 0.30 -58.38 16 22 Si 1.12 49.14 29.92 68.60 2.05 51.19 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 C -0.13 -4.07 4.70 30.66 0.14 -3.93 16 27 C 0.11 3.43 4.52 86.35 0.39 3.82 16 28 C -0.03 -0.70 9.15 22.79 0.21 -0.49 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.42 1.39 6.85 -92.71 -0.64 0.75 16 33 H 0.18 0.25 6.39 -2.91 -0.02 0.23 16 34 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 35 H 0.14 3.07 6.05 -2.91 -0.02 3.05 16 36 H 0.08 2.89 7.00 -2.38 -0.02 2.87 16 37 H 0.06 2.16 6.94 -2.39 -0.02 2.14 16 38 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.58 7.27 -2.39 -0.02 1.57 16 43 H 0.36 17.25 5.30 -92.71 -0.49 16.76 16 44 H 0.24 14.45 6.77 -92.71 -0.63 13.83 16 45 H 0.07 2.36 7.32 -2.38 -0.02 2.34 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.11 2.70 4.46 -2.38 -0.01 2.69 16 48 H 0.06 2.35 7.65 -2.38 -0.02 2.33 16 49 H 0.11 3.80 7.59 -2.91 -0.02 3.78 16 Total: -1.00 -78.37 386.53 2.07 -76.30 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.01 Total: 32.94 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.30 Total: 8.03 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -6.16 Total: -125.25 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.13 Total: -43.21 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.19 kcal Total: -78.37 2.07 -76.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717304462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.506 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds