Wall clock time and date at job start Wed Apr 1 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.46125 * 2 1 4 4 C 1.36940 * 120.00069 * 60.03021 * 3 2 1 5 5 H 1.08004 * 120.00085 * 359.97438 * 4 3 2 6 6 C 1.38810 * 119.99923 * 179.97438 * 4 3 2 7 7 N 1.31619 * 120.00270 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99844 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47082 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.46956 * 300.00130 * 8 6 4 11 11 H 1.48502 * 109.46696 * 59.99862 * 8 6 4 12 12 C 1.53039 * 109.44607 * 119.96746 * 2 1 3 13 13 C 1.53192 * 109.30947 * 181.37622 * 12 2 1 14 14 N 1.46923 * 108.77858 * 305.36422 * 13 12 2 15 15 C 1.34779 * 120.63107 * 233.58819 * 14 13 12 16 16 O 1.21548 * 119.99728 * 172.16845 * 15 14 13 17 17 C 1.47930 * 119.99874 * 352.16763 * 15 14 13 18 18 C 1.39465 * 119.70793 * 170.47388 * 17 15 14 19 19 C 1.38422 * 119.06136 * 179.97438 * 18 17 15 20 20 C 1.38686 * 118.71638 * 359.83011 * 19 18 17 21 21 C 1.39545 * 119.05596 * 0.23708 * 20 19 18 22 22 N 1.31303 * 120.83594 * 359.59513 * 21 20 19 23 23 O 1.35532 * 121.71832 * 180.46076 * 20 19 18 24 24 C 1.42884 * 117.73173 * 342.44952 * 23 20 19 25 25 C 1.53399 * 108.51005 * 49.38619 * 24 23 20 26 26 C 1.50490 * 119.62732 * 179.59784 * 19 18 17 27 27 C 1.46927 * 118.73751 * 53.60902 * 14 13 12 28 28 C 1.53042 * 109.45932 * 240.02586 * 2 1 3 29 29 H 1.09003 * 109.46595 * 59.99648 * 1 2 3 30 30 H 1.08993 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46956 * 300.00163 * 1 2 3 32 32 H 0.96996 * 120.00386 * 240.02689 * 3 2 1 33 33 H 0.96999 * 119.99553 * 359.97438 * 7 6 4 34 34 H 1.09003 * 109.49825 * 301.32900 * 12 2 1 35 35 H 1.09000 * 109.50009 * 61.42357 * 12 2 1 36 36 H 1.09011 * 109.58450 * 185.57623 * 13 12 2 37 37 H 1.09002 * 109.58678 * 65.15524 * 13 12 2 38 38 H 1.08000 * 120.47252 * 0.02562 * 18 17 15 39 39 H 1.08001 * 119.58196 * 179.84143 * 21 20 19 40 40 H 1.08996 * 109.62913 * 169.09414 * 24 23 20 41 41 H 1.09000 * 109.63027 * 289.48351 * 24 23 20 42 42 H 1.08999 * 109.68616 * 55.07369 * 25 24 23 43 43 H 1.09008 * 109.68435 * 175.59703 * 25 24 23 44 44 H 1.09003 * 109.45502 * 282.58437 * 26 19 18 45 45 H 1.08998 * 109.45763 * 42.53033 * 26 19 18 46 46 H 1.08997 * 109.58625 * 186.60730 * 27 14 13 47 47 H 1.09004 * 109.58565 * 66.17969 * 27 14 13 48 48 H 1.08994 * 109.49778 * 298.58150 * 28 2 1 49 49 H 1.08995 * 109.49469 * 58.64721 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6877 2.2242 1.0274 5 1 1.0669 1.8709 1.8374 6 6 2.1506 3.5329 1.0276 7 7 2.9067 3.9637 0.0402 8 14 1.6992 4.6830 2.4287 9 1 2.3136 6.0144 2.1937 10 1 0.2226 4.8247 2.4966 11 1 2.2022 4.1242 3.7093 12 6 2.0396 -0.7208 1.2502 13 6 3.5711 -0.6890 1.2645 14 7 4.0676 -1.2494 0.0003 15 6 4.9616 -2.2580 0.0005 16 8 5.2574 -2.8081 -1.0423 17 6 5.5829 -2.6955 1.2697 18 6 6.3499 -3.8599 1.2985 19 6 6.9254 -4.2566 2.4932 20 6 6.7213 -3.4776 3.6223 21 6 5.9407 -2.3255 3.5187 22 7 5.4101 -1.9730 2.3705 23 8 7.2636 -3.8039 4.8207 24 6 7.7259 -5.1441 4.9985 25 6 8.6139 -5.5154 3.8041 26 6 7.7480 -5.5159 2.5408 27 6 3.5714 -0.6891 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.5754 1.6988 -0.7276 33 1 3.1408 3.3665 -0.6875 34 1 1.6569 -0.2207 2.1399 35 1 1.6972 -1.7556 1.2384 36 1 3.9412 -1.2850 2.0988 37 1 3.9142 0.3404 1.3676 38 1 6.4934 -4.4435 0.4011 39 1 5.7740 -1.7140 4.3931 40 1 8.3040 -5.2128 5.9200 41 1 6.8736 -5.8217 5.0496 42 1 9.4146 -4.7833 3.7002 43 1 9.0405 -6.5067 3.9579 44 1 7.0860 -6.3817 2.5547 45 1 8.3896 -5.5639 1.6609 46 1 3.9416 -1.2851 -2.0981 47 1 3.9146 0.3404 -1.3671 48 1 1.6976 -1.7557 -1.2382 49 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755135606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:48 Heat of formation + Delta-G solvation = -8.163545 kcal Electronic energy + Delta-G solvation = -31271.261721 eV Core-core repulsion = 27199.372422 eV Total energy + Delta-G solvation = -4071.889299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50324 -40.03263 -38.53553 -37.59887 -35.12570 -34.49480 -32.63152 -32.02376 -31.19741 -30.35456 -28.65658 -27.71134 -26.56920 -25.21714 -23.82638 -23.51932 -22.79976 -22.66362 -21.19405 -19.74216 -18.54281 -18.21256 -17.72977 -16.97902 -16.68806 -16.04831 -15.84015 -15.28954 -15.12273 -14.89497 -14.76994 -14.41459 -14.23955 -13.98696 -13.82424 -13.65399 -13.52729 -13.43510 -12.96587 -12.86941 -12.68947 -12.48114 -12.05317 -11.79755 -11.52724 -11.41810 -11.30581 -11.16173 -11.13537 -10.75931 -10.62280 -10.54610 -10.29424 -10.04235 -9.91804 -9.79268 -9.74207 -9.02232 -8.98768 -8.70560 -8.67320 -8.11532 -6.94162 -6.01076 -3.00588 0.56453 0.89655 2.67486 2.85628 3.26471 3.55472 3.58659 3.71109 3.75986 4.04767 4.10766 4.15042 4.26880 4.36811 4.64304 4.72736 4.79838 4.82918 4.98424 4.99887 5.19432 5.31430 5.34766 5.40893 5.42427 5.48553 5.56733 5.62567 5.66283 5.72555 5.79364 5.85971 5.92111 6.02325 6.11480 6.15230 6.28146 6.37559 6.40753 6.57720 6.68618 6.70884 6.79506 6.89157 7.04106 7.07353 7.16181 7.56722 7.82609 7.89604 8.38023 8.83458 9.30759 10.17384 10.33445 11.46976 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003064 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.587754 B = 9134.874466 C =10349.794888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.201 3.799 3 N -0.727 5.727 4 C -0.317 4.317 5 H 0.064 0.936 6 C -0.046 4.046 7 N -0.947 5.947 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.298 1.298 11 H -0.296 1.296 12 C -0.133 4.133 13 C 0.085 3.915 14 N -0.575 5.575 15 C 0.568 3.432 16 O -0.555 6.555 17 C 0.050 3.950 18 C -0.074 4.074 19 C -0.131 4.131 20 C 0.101 3.899 21 C 0.076 3.924 22 N -0.406 5.406 23 O -0.304 6.304 24 C 0.058 3.942 25 C -0.161 4.161 26 C -0.080 4.080 27 C 0.114 3.886 28 C -0.129 4.129 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 -21.871 7.984 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.110 3.890 3 N -0.370 5.370 4 C -0.448 4.448 5 H 0.082 0.918 6 C -0.243 4.243 7 N -0.593 5.593 8 Si 0.907 3.093 9 H -0.213 1.213 10 H -0.225 1.225 11 H -0.223 1.223 12 C -0.174 4.174 13 C -0.037 4.037 14 N -0.305 5.305 15 C 0.355 3.645 16 O -0.434 6.434 17 C -0.086 4.086 18 C -0.095 4.095 19 C -0.139 4.139 20 C 0.052 3.948 21 C -0.085 4.085 22 N -0.118 5.118 23 O -0.216 6.216 24 C -0.017 4.017 25 C -0.198 4.198 26 C -0.117 4.117 27 C -0.008 4.008 28 C -0.168 4.168 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.148 0.852 37 H 0.101 0.899 38 H 0.167 0.833 39 H 0.190 0.810 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.714 -19.775 8.294 23.147 hybrid contribution 0.311 -2.248 -0.781 2.400 sum 9.026 -22.023 7.513 24.959 Atomic orbital electron populations 1.22202 0.97719 0.98855 1.02011 1.19494 0.91994 0.85738 0.91772 1.42486 1.61214 1.06688 1.26660 1.19902 1.29223 0.94333 1.01382 0.91808 1.25624 0.99216 0.95972 1.03522 1.70880 1.39153 1.37920 1.11298 0.83300 0.75236 0.76350 0.74440 1.21263 1.22534 1.22343 1.22318 0.95793 0.98465 1.00809 1.22894 0.93794 1.01579 0.85406 1.47987 1.40501 1.33013 1.08986 1.17739 0.79768 0.80109 0.86919 1.90731 1.64201 1.56247 1.32228 1.21132 1.00194 0.94148 0.93130 1.21816 0.94106 0.95566 0.98019 1.20074 1.01677 0.99379 0.92795 1.20012 0.93862 0.95831 0.85075 1.22708 0.94283 0.94572 0.96971 1.67838 1.16727 1.29013 0.98242 1.85991 1.74118 1.31039 1.30500 1.23077 0.98001 0.81327 0.99344 1.22265 0.98897 1.03840 0.94813 1.20487 0.97600 0.94230 0.99367 1.21613 0.94329 0.99060 0.85807 1.22089 0.94816 1.00523 0.99355 0.93401 0.94659 0.92505 0.80022 0.93502 0.90813 0.93900 0.85243 0.89914 0.83277 0.81018 0.87043 0.91396 0.90105 0.89244 0.89641 0.89145 0.89831 0.90837 0.91845 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.44 37.16 0.31 -2.47 16 2 C 0.20 3.93 0.74 -131.78 -0.10 3.84 16 3 N -0.73 -17.23 4.13 -47.19 -0.19 -17.42 16 4 C -0.32 -8.44 8.68 -15.06 -0.13 -8.58 16 5 H 0.06 1.69 6.70 -52.48 -0.35 1.34 16 6 C -0.05 -1.30 5.50 -17.43 -0.10 -1.40 16 7 N -0.95 -28.89 13.70 55.49 0.76 -28.13 16 8 Si 1.08 25.80 29.92 -169.99 -5.09 20.71 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 12 C -0.13 -2.48 4.71 -26.61 -0.13 -2.60 16 13 C 0.08 1.57 5.62 -3.71 -0.02 1.55 16 14 N -0.58 -10.47 2.97 -173.84 -0.52 -10.98 16 15 C 0.57 10.13 7.65 -12.29 -0.09 10.04 16 16 O -0.55 -10.76 15.79 5.32 0.08 -10.68 16 17 C 0.05 0.77 6.57 -83.02 -0.55 0.22 16 18 C -0.07 -0.93 9.30 -39.06 -0.36 -1.29 16 19 C -0.13 -1.35 5.75 -104.49 -0.60 -1.95 16 20 C 0.10 1.10 6.50 -38.93 -0.25 0.85 16 21 C 0.08 0.93 11.12 -17.29 -0.19 0.74 16 22 N -0.41 -6.02 6.12 -9.61 -0.06 -6.08 16 23 O -0.30 -2.88 10.29 -18.29 -0.19 -3.07 16 24 C 0.06 0.33 7.01 37.36 0.26 0.59 16 25 C -0.16 -0.83 6.20 -26.44 -0.16 -0.99 16 26 C -0.08 -0.53 5.90 -27.90 -0.16 -0.70 16 27 C 0.11 2.05 6.17 -3.71 -0.02 2.03 16 28 C -0.13 -2.24 4.96 -26.61 -0.13 -2.37 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.14 7.27 -51.93 -0.38 0.76 16 32 H 0.37 9.15 5.30 -40.82 -0.22 8.93 16 33 H 0.25 7.65 6.77 -40.82 -0.28 7.37 16 34 H 0.07 1.45 7.31 -51.93 -0.38 1.07 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.13 2.23 4.04 -83.68 -0.34 1.90 16 37 H 0.08 1.83 7.74 -51.93 -0.40 1.43 16 38 H 0.15 1.73 7.67 -52.49 -0.40 1.32 16 39 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 47 H 0.07 1.43 6.94 -51.93 -0.36 1.07 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -32.83 379.41 -9.25 -42.08 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.34 Total: 10.34 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.43 Total: -2.48 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.01 Total: -62.62 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.10 Total: -13.74 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.09 Total: 20.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.83 -9.25 -42.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755135606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.913 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds