Wall clock time and date at job start Wed Apr 1 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.46125 * 2 1 4 4 C 1.36940 * 120.00069 * 60.03021 * 3 2 1 5 5 H 1.08004 * 120.00085 * 359.97438 * 4 3 2 6 6 C 1.38810 * 119.99923 * 179.97438 * 4 3 2 7 7 N 1.31619 * 120.00270 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99844 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47082 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.46956 * 300.00130 * 8 6 4 11 11 H 1.48502 * 109.46696 * 59.99862 * 8 6 4 12 12 C 1.53039 * 109.44607 * 119.96746 * 2 1 3 13 13 C 1.53192 * 109.30947 * 181.37622 * 12 2 1 14 14 N 1.46923 * 108.77858 * 305.36422 * 13 12 2 15 15 C 1.34779 * 120.63107 * 233.58819 * 14 13 12 16 16 O 1.21548 * 119.99728 * 172.16845 * 15 14 13 17 17 C 1.47930 * 119.99874 * 352.16763 * 15 14 13 18 18 C 1.39465 * 119.70793 * 170.47388 * 17 15 14 19 19 C 1.38422 * 119.06136 * 179.97438 * 18 17 15 20 20 C 1.38686 * 118.71638 * 359.83011 * 19 18 17 21 21 C 1.39545 * 119.05596 * 0.23708 * 20 19 18 22 22 N 1.31303 * 120.83594 * 359.59513 * 21 20 19 23 23 O 1.35532 * 121.71832 * 180.46076 * 20 19 18 24 24 C 1.42884 * 117.73173 * 342.44952 * 23 20 19 25 25 C 1.53399 * 108.51005 * 49.38619 * 24 23 20 26 26 C 1.50490 * 119.62732 * 179.59784 * 19 18 17 27 27 C 1.46927 * 118.73751 * 53.60902 * 14 13 12 28 28 C 1.53042 * 109.45932 * 240.02586 * 2 1 3 29 29 H 1.09003 * 109.46595 * 59.99648 * 1 2 3 30 30 H 1.08993 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46956 * 300.00163 * 1 2 3 32 32 H 0.96996 * 120.00386 * 240.02689 * 3 2 1 33 33 H 0.96999 * 119.99553 * 359.97438 * 7 6 4 34 34 H 1.09003 * 109.49825 * 301.32900 * 12 2 1 35 35 H 1.09000 * 109.50009 * 61.42357 * 12 2 1 36 36 H 1.09011 * 109.58450 * 185.57623 * 13 12 2 37 37 H 1.09002 * 109.58678 * 65.15524 * 13 12 2 38 38 H 1.08000 * 120.47252 * 0.02562 * 18 17 15 39 39 H 1.08001 * 119.58196 * 179.84143 * 21 20 19 40 40 H 1.08996 * 109.62913 * 169.09414 * 24 23 20 41 41 H 1.09000 * 109.63027 * 289.48351 * 24 23 20 42 42 H 1.08999 * 109.68616 * 55.07369 * 25 24 23 43 43 H 1.09008 * 109.68435 * 175.59703 * 25 24 23 44 44 H 1.09003 * 109.45502 * 282.58437 * 26 19 18 45 45 H 1.08998 * 109.45763 * 42.53033 * 26 19 18 46 46 H 1.08997 * 109.58625 * 186.60730 * 27 14 13 47 47 H 1.09004 * 109.58565 * 66.17969 * 27 14 13 48 48 H 1.08994 * 109.49778 * 298.58150 * 28 2 1 49 49 H 1.08995 * 109.49469 * 58.64721 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6877 2.2242 1.0274 5 1 1.0669 1.8709 1.8374 6 6 2.1506 3.5329 1.0276 7 7 2.9067 3.9637 0.0402 8 14 1.6992 4.6830 2.4287 9 1 2.3136 6.0144 2.1937 10 1 0.2226 4.8247 2.4966 11 1 2.2022 4.1242 3.7093 12 6 2.0396 -0.7208 1.2502 13 6 3.5711 -0.6890 1.2645 14 7 4.0676 -1.2494 0.0003 15 6 4.9616 -2.2580 0.0005 16 8 5.2574 -2.8081 -1.0423 17 6 5.5829 -2.6955 1.2697 18 6 6.3499 -3.8599 1.2985 19 6 6.9254 -4.2566 2.4932 20 6 6.7213 -3.4776 3.6223 21 6 5.9407 -2.3255 3.5187 22 7 5.4101 -1.9730 2.3705 23 8 7.2636 -3.8039 4.8207 24 6 7.7259 -5.1441 4.9985 25 6 8.6139 -5.5154 3.8041 26 6 7.7480 -5.5159 2.5408 27 6 3.5714 -0.6891 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.5754 1.6988 -0.7276 33 1 3.1408 3.3665 -0.6875 34 1 1.6569 -0.2207 2.1399 35 1 1.6972 -1.7556 1.2384 36 1 3.9412 -1.2850 2.0988 37 1 3.9142 0.3404 1.3676 38 1 6.4934 -4.4435 0.4011 39 1 5.7740 -1.7140 4.3931 40 1 8.3040 -5.2128 5.9200 41 1 6.8736 -5.8217 5.0496 42 1 9.4146 -4.7833 3.7002 43 1 9.0405 -6.5067 3.9579 44 1 7.0860 -6.3817 2.5547 45 1 8.3896 -5.5639 1.6609 46 1 3.9416 -1.2851 -2.0981 47 1 3.9146 0.3404 -1.3671 48 1 1.6976 -1.7557 -1.2382 49 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755135606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:47 Heat of formation + Delta-G solvation = -28.279874 kcal Electronic energy + Delta-G solvation = -31272.134031 eV Core-core repulsion = 27199.372422 eV Total energy + Delta-G solvation = -4072.761609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.42495 -41.26093 -39.68452 -38.96144 -36.30343 -35.65412 -34.40579 -32.96767 -32.31163 -31.61904 -30.54432 -29.20324 -27.20205 -26.27531 -25.62336 -24.60405 -24.15992 -24.03200 -22.24133 -20.91539 -19.98558 -19.07292 -18.94463 -18.70444 -17.79679 -17.30023 -16.82756 -16.74070 -16.24517 -16.12567 -15.79814 -15.66028 -15.37971 -15.19947 -15.07793 -14.98025 -14.85910 -14.44990 -14.29385 -14.13247 -13.95559 -13.63313 -13.27320 -13.15053 -12.83090 -12.69749 -12.59325 -12.48255 -12.24218 -12.11803 -11.94616 -11.88906 -11.80672 -11.65692 -11.46696 -11.37343 -10.94445 -10.87805 -10.63508 -9.99872 -9.76339 -9.47614 -8.95964 -8.24136 -5.16715 -0.45234 -0.00235 1.54436 1.60461 1.70228 1.85324 1.89355 2.12809 2.62681 2.77965 3.04729 3.37949 3.39010 3.52849 3.62026 3.67632 3.75866 3.88135 3.91575 3.99430 4.03824 4.10729 4.24341 4.32307 4.41389 4.47482 4.53452 4.59580 4.60613 4.61512 4.69470 4.80038 4.84567 4.88346 4.90444 4.95142 5.00065 5.00847 5.10158 5.12385 5.15560 5.22007 5.30702 5.49202 5.52893 5.69099 5.76552 6.13054 6.35858 6.59592 6.62255 7.01265 7.22388 8.13286 8.26382 9.27716 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003064 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.587754 B = 9134.874466 C =10349.794888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.191 3.809 3 N -0.735 5.735 4 C -0.296 4.296 5 H 0.067 0.933 6 C -0.110 4.110 7 N -0.984 5.984 8 Si 1.119 2.881 9 H -0.300 1.300 10 H -0.281 1.281 11 H -0.279 1.279 12 C -0.127 4.127 13 C 0.097 3.903 14 N -0.581 5.581 15 C 0.566 3.434 16 O -0.576 6.576 17 C 0.019 3.981 18 C -0.070 4.070 19 C -0.125 4.125 20 C 0.112 3.888 21 C 0.066 3.934 22 N -0.432 5.432 23 O -0.313 6.313 24 C 0.046 3.954 25 C -0.156 4.156 26 C -0.082 4.082 27 C 0.116 3.884 28 C -0.119 4.119 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.356 0.644 33 H 0.241 0.759 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.149 0.851 37 H 0.039 0.961 38 H 0.156 0.844 39 H 0.187 0.813 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.083 0.917 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 -25.145 9.955 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.101 3.899 3 N -0.377 5.377 4 C -0.428 4.428 5 H 0.085 0.915 6 C -0.301 4.301 7 N -0.634 5.634 8 Si 0.946 3.054 9 H -0.227 1.227 10 H -0.208 1.208 11 H -0.205 1.205 12 C -0.167 4.167 13 C -0.025 4.025 14 N -0.310 5.310 15 C 0.354 3.646 16 O -0.457 6.457 17 C -0.116 4.116 18 C -0.091 4.091 19 C -0.134 4.134 20 C 0.063 3.937 21 C -0.096 4.096 22 N -0.145 5.145 23 O -0.225 6.225 24 C -0.028 4.028 25 C -0.193 4.193 26 C -0.119 4.119 27 C -0.007 4.007 28 C -0.157 4.157 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.189 0.811 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.057 0.943 38 H 0.173 0.827 39 H 0.204 0.796 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.138 0.862 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.055 -23.118 10.280 26.872 hybrid contribution 0.310 -1.420 -1.291 1.944 sum 9.365 -24.538 8.989 27.760 Atomic orbital electron populations 1.22107 0.96504 1.00607 1.00843 1.19811 0.92750 0.83870 0.93424 1.42654 1.61108 1.08236 1.25682 1.20152 1.26958 0.94334 1.01369 0.91514 1.26862 0.99825 0.98271 1.05115 1.70986 1.41958 1.38076 1.12399 0.82715 0.75772 0.74098 0.72831 1.22708 1.20800 1.20531 1.22239 0.95607 0.99373 0.99489 1.22747 0.93812 0.99459 0.86507 1.48008 1.41049 1.33381 1.08608 1.18167 0.79061 0.79485 0.87846 1.90697 1.64708 1.56950 1.33316 1.20841 1.02484 0.95911 0.92328 1.21909 0.93448 0.94562 0.99186 1.20446 1.00974 1.00432 0.91514 1.19991 0.92662 0.95080 0.85961 1.22940 0.94625 0.95553 0.96447 1.67514 1.18305 1.29721 0.98931 1.85995 1.73546 1.33441 1.29472 1.23492 0.98924 0.79550 1.00812 1.22279 0.98147 1.05366 0.93488 1.20661 0.97790 0.92682 1.00741 1.21525 0.94985 0.97819 0.86323 1.22010 0.94025 1.01312 0.98400 0.94079 0.91435 0.94115 0.81142 0.94877 0.92098 0.91586 0.83512 0.94288 0.82665 0.79627 0.84563 0.90206 0.90923 0.86193 0.87782 0.88208 0.89249 0.93263 0.89807 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.44 71.98 0.61 -4.51 16 2 C 0.19 7.43 0.74 3.63 0.00 7.43 16 3 N -0.73 -35.78 4.13 -303.22 -1.25 -37.03 16 4 C -0.30 -16.06 8.68 84.03 0.73 -15.33 16 5 H 0.07 3.54 6.70 -2.91 -0.02 3.52 16 6 C -0.11 -6.38 5.50 84.86 0.47 -5.92 16 7 N -0.98 -62.38 13.70 21.65 0.30 -62.09 16 8 Si 1.12 52.82 29.92 68.60 2.05 54.87 16 9 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 C -0.13 -4.66 4.71 30.67 0.14 -4.52 16 13 C 0.10 3.68 5.62 86.36 0.48 4.16 16 14 N -0.58 -21.62 2.97 -822.20 -2.44 -24.06 16 15 C 0.57 20.49 7.65 86.81 0.66 21.15 16 16 O -0.58 -22.54 15.79 -3.87 -0.06 -22.60 16 17 C 0.02 0.59 6.57 41.86 0.28 0.86 16 18 C -0.07 -1.68 9.30 22.61 0.21 -1.46 16 19 C -0.13 -2.31 5.75 -19.78 -0.11 -2.42 16 20 C 0.11 2.24 6.50 22.69 0.15 2.39 16 21 C 0.07 1.58 11.12 85.09 0.95 2.52 16 22 N -0.43 -12.89 6.12 -184.33 -1.13 -14.02 16 23 O -0.31 -5.07 10.29 -88.36 -0.91 -5.98 16 24 C 0.05 0.35 7.01 72.12 0.51 0.86 16 25 C -0.16 -0.98 6.20 30.78 0.19 -0.79 16 26 C -0.08 -0.81 5.90 29.83 0.18 -0.63 16 27 C 0.12 4.28 6.17 86.36 0.53 4.82 16 28 C -0.12 -4.06 4.96 30.67 0.15 -3.91 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.58 7.27 -2.39 -0.02 1.56 16 32 H 0.36 18.68 5.30 -92.71 -0.49 18.19 16 33 H 0.24 15.29 6.77 -92.71 -0.63 14.66 16 34 H 0.06 2.38 7.31 -2.39 -0.02 2.36 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.15 5.15 4.04 -65.07 -0.26 4.89 16 37 H 0.04 1.81 7.74 -2.39 -0.02 1.79 16 38 H 0.16 3.43 7.67 -2.91 -0.02 3.40 16 39 H 0.19 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 3.17 7.00 -2.39 -0.02 3.15 16 47 H 0.05 2.04 6.94 -2.39 -0.02 2.02 16 48 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -73.66 379.41 3.05 -70.61 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.37 Total: 35.59 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.12 Total: 4.70 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -4.53 Total: -137.20 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.97 Total: -28.57 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 2.05 Total: 54.87 kcal Total: -73.66 3.05 -70.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755135606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.328 kcal (2) G-P(sol) polarization free energy of solvation -73.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds