Wall clock time and date at job start Wed Apr 1 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38123 * 126.29446 * 2 1 4 4 C 1.47290 * 126.42664 * 0.02562 * 3 2 1 5 5 O 1.21521 * 119.99913 * 0.02562 * 4 3 2 6 6 O 1.34760 * 119.99675 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99442 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.54932 * 29.81908 * 7 6 4 9 9 C 1.53189 * 109.54432 * 269.54323 * 7 6 4 10 10 H 1.09001 * 109.65844 * 61.94786 * 9 7 6 11 11 C 1.53188 * 109.11755 * 301.12145 * 9 7 6 12 12 C 1.53184 * 109.03567 * 299.05813 * 11 9 7 13 13 H 1.09002 * 109.65449 * 181.77493 * 12 11 9 14 14 C 1.53177 * 109.11877 * 60.94402 * 12 11 9 15 15 C 1.53201 * 109.54373 * 150.00267 * 7 6 4 16 16 H 1.09001 * 109.65740 * 298.05573 * 15 7 6 17 17 C 1.53140 * 109.09665 * 177.93961 * 15 7 6 18 18 N 1.46879 * 109.40171 * 300.46110 * 17 15 7 19 19 C 1.46900 * 111.07471 * 62.04961 * 18 17 15 20 20 C 1.46902 * 111.07816 * 297.94815 * 18 17 15 21 21 C 1.41344 * 107.14503 * 180.02562 * 3 2 1 22 22 N 1.30431 * 108.01197 * 359.73408 * 21 3 2 23 23 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 24 24 C 1.46491 * 125.74900 * 359.97341 * 23 2 1 25 25 C 1.50702 * 109.46957 * 90.00099 * 24 23 2 26 26 H 1.08002 * 120.00299 * 0.02562 * 25 24 23 27 27 C 1.37884 * 119.99942 * 179.72213 * 25 24 23 28 28 N 1.31514 * 119.99698 * 0.28408 * 27 25 24 29 29 Si 1.86794 * 119.99837 * 180.27476 * 27 25 24 30 30 H 1.48496 * 109.47341 * 0.02562 * 29 27 25 31 31 H 1.48508 * 109.46983 * 120.00379 * 29 27 25 32 32 H 1.48503 * 109.47491 * 240.00192 * 29 27 25 33 33 H 1.08993 * 109.46826 * 270.00042 * 1 2 3 34 34 H 1.09001 * 109.47180 * 30.00515 * 1 2 3 35 35 H 1.08998 * 109.46656 * 150.00205 * 1 2 3 36 36 H 1.08999 * 109.54004 * 58.92233 * 11 9 7 37 37 H 1.08998 * 109.53864 * 179.09747 * 11 9 7 38 38 H 1.09003 * 109.54448 * 179.15633 * 14 12 11 39 39 H 1.08999 * 109.54636 * 58.87748 * 14 12 11 40 40 H 1.08992 * 109.48214 * 60.44229 * 17 15 7 41 41 H 1.08996 * 109.48190 * 180.48369 * 17 15 7 42 42 H 1.09004 * 109.48397 * 57.93974 * 19 18 17 43 43 H 1.08998 * 109.48850 * 177.96821 * 19 18 17 44 44 H 1.08995 * 109.48622 * 182.01428 * 20 18 17 45 45 H 1.09003 * 109.48495 * 302.06340 * 20 18 17 46 46 H 1.08003 * 125.99161 * 180.02562 * 21 3 2 47 47 H 1.09004 * 109.47166 * 330.00365 * 24 23 2 48 48 H 1.08994 * 109.47507 * 210.00071 * 24 23 2 49 49 H 0.97005 * 119.99651 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0005 5 8 0.7018 2.7873 0.0015 6 8 2.8015 3.5097 0.0010 7 6 2.2982 4.8716 0.0021 8 1 1.3360 4.9045 0.5131 9 6 2.1310 5.3573 -1.4411 10 1 1.4001 4.7335 -1.9556 11 6 3.4846 5.2855 -2.1547 12 6 4.4798 6.1980 -1.4312 13 1 5.4385 6.1788 -1.9496 14 6 4.6480 5.7126 0.0119 15 6 3.2936 5.7853 0.7243 16 1 3.3961 5.4681 1.7620 17 6 2.7780 7.2264 0.6745 18 7 2.6341 7.6451 -0.7259 19 6 1.6494 6.8111 -1.4280 20 6 3.9295 7.6272 -1.4185 21 6 3.6599 0.6496 -0.0006 22 7 3.6340 -0.6544 0.0048 23 7 2.3015 -1.0818 -0.0005 24 6 1.8499 -2.4754 -0.0006 25 6 1.6945 -2.9530 -1.4214 26 1 1.9110 -2.2853 -2.2423 27 6 1.2819 -4.2443 -1.6735 28 7 1.0187 -5.0574 -0.6739 29 14 1.0967 -4.8386 -3.4346 30 1 1.4518 -3.7395 -4.3679 31 1 2.0006 -5.9942 -3.6647 32 1 -0.3090 -5.2549 -3.6715 33 1 -0.3633 0.0000 1.0276 34 1 -0.3633 0.8899 -0.5139 35 1 -0.3632 -0.8900 -0.5138 36 1 3.8517 4.2593 -2.1375 37 1 3.3702 5.6146 -3.1875 38 1 5.3666 6.3485 0.5290 39 1 5.0047 4.6827 0.0110 40 1 1.8101 7.2836 1.1724 41 1 3.4861 7.8834 1.1794 42 1 0.6897 6.8715 -0.9147 43 1 1.5366 7.1661 -2.4524 44 1 3.7989 7.9756 -2.4430 45 1 4.6290 8.2814 -0.8981 46 1 4.5461 1.2669 -0.0004 47 1 0.8913 -2.5467 0.5136 48 1 2.5846 -3.0955 0.5129 49 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772394594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:15 Heat of formation + Delta-G solvation = -25.340290 kcal Electronic energy + Delta-G solvation = -31252.840058 eV Core-core repulsion = 27180.205919 eV Total energy + Delta-G solvation = -4072.634139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 22.18 seconds Orbital eigenvalues (eV) -41.92093 -40.83829 -39.29374 -36.05832 -33.96316 -33.45725 -32.98110 -32.44351 -32.12277 -31.22121 -27.79961 -26.81509 -26.29180 -25.93378 -23.75261 -23.06841 -22.27359 -22.08289 -21.76489 -20.23718 -18.94373 -18.24440 -17.34764 -16.82892 -16.25175 -15.88526 -15.45939 -15.29678 -15.21661 -14.92782 -14.64718 -14.44382 -14.31953 -13.90462 -13.72764 -13.48634 -13.35081 -12.81994 -12.79249 -12.67263 -12.58018 -12.25796 -12.13889 -11.84498 -11.79181 -11.62112 -11.60898 -11.55808 -11.29637 -11.14808 -11.13934 -10.95481 -10.76917 -10.44956 -10.32464 -10.10494 -9.96608 -9.92263 -9.78033 -8.76161 -8.66759 -8.41124 -8.09422 -6.38438 -4.46644 1.90711 2.68664 2.79449 3.14020 3.22266 3.26307 3.38790 3.65542 3.73875 4.20529 4.24456 4.26079 4.61251 4.66689 4.72211 4.83298 4.86483 4.93996 4.96853 5.11457 5.12286 5.13940 5.16497 5.27290 5.30329 5.47136 5.49530 5.53394 5.56266 5.60944 5.65628 5.66805 5.68045 5.86506 5.94761 5.96844 5.98766 5.99801 6.05402 6.14587 6.36528 6.44415 6.69483 6.77128 6.78703 6.81131 6.84347 7.11010 7.49790 7.68963 7.71711 8.18704 8.33210 8.59338 9.20765 10.69807 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.002441 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.108118 B =11466.421634 C =11589.041832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.172 3.828 3 C -0.318 4.318 4 C 0.549 3.451 5 O -0.531 6.531 6 O -0.345 6.345 7 C 0.105 3.895 8 H 0.084 0.916 9 C -0.138 4.138 10 H 0.083 0.917 11 C -0.106 4.106 12 C -0.123 4.123 13 H 0.078 0.922 14 C -0.104 4.104 15 C -0.119 4.119 16 H 0.085 0.915 17 C 0.061 3.939 18 N -0.529 5.529 19 C 0.062 3.938 20 C 0.057 3.943 21 C 0.080 3.920 22 N -0.297 5.297 23 N -0.311 5.311 24 C 0.250 3.750 25 C -0.542 4.542 26 H 0.066 0.934 27 C 0.068 3.932 28 N -0.888 5.888 29 Si 0.908 3.092 30 H -0.271 1.271 31 H -0.279 1.279 32 H -0.279 1.279 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.183 0.817 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 23.976 1.417 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.034 3.966 3 C -0.332 4.332 4 C 0.397 3.603 5 O -0.422 6.422 6 O -0.262 6.262 7 C 0.049 3.951 8 H 0.102 0.898 9 C -0.159 4.159 10 H 0.102 0.898 11 C -0.143 4.143 12 C -0.143 4.143 13 H 0.096 0.904 14 C -0.142 4.142 15 C -0.139 4.139 16 H 0.103 0.897 17 C -0.068 4.068 18 N -0.249 5.249 19 C -0.067 4.067 20 C -0.071 4.071 21 C -0.108 4.108 22 N -0.116 5.116 23 N -0.087 5.087 24 C 0.133 3.867 25 C -0.580 4.580 26 H 0.085 0.915 27 C -0.136 4.136 28 N -0.526 5.526 29 Si 0.735 3.265 30 H -0.195 1.195 31 H -0.205 1.205 32 H -0.205 1.205 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.200 0.800 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.845 23.137 1.472 23.501 hybrid contribution -0.281 -0.708 -0.912 1.188 sum 3.563 22.429 0.560 22.717 Atomic orbital electron populations 1.20660 0.86628 1.05062 1.03499 1.21455 0.94968 0.86439 0.93743 1.18851 0.93735 0.89397 1.31179 1.20087 0.83542 0.85112 0.71581 1.90738 1.18011 1.84453 1.48950 1.86602 1.39593 1.15343 1.84643 1.22557 0.97889 0.78593 0.96046 0.89843 1.22178 0.98828 0.98766 0.96090 0.89820 1.21537 0.93974 1.00652 0.98184 1.21756 0.99463 0.96425 0.96620 0.90365 1.21530 0.95745 1.02374 0.94538 1.21914 0.95835 0.95897 1.00257 0.89677 1.22193 1.01888 0.92637 0.90047 1.62454 1.08796 1.51468 1.02208 1.22171 0.95501 0.89137 0.99878 1.22204 0.90284 0.95179 0.99412 1.23886 0.96609 0.92115 0.98140 1.77210 0.98301 1.12340 1.23792 1.49424 1.02600 1.08295 1.48337 1.19906 0.96523 0.70677 0.99591 1.21290 1.47663 0.98134 0.90938 0.91543 1.24930 0.94380 0.95951 0.98373 1.69923 1.44438 1.07112 1.31104 0.86262 0.77996 0.78894 0.83349 1.19494 1.20510 1.20503 0.90223 0.88694 0.89515 0.90861 0.91908 0.91857 0.90582 0.90353 0.89819 0.90337 0.90061 0.90671 0.90651 0.80007 0.92455 0.92294 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 36.01 0.34 -1.42 16 2 C 0.17 3.47 7.01 -81.59 -0.57 2.89 16 3 C -0.32 -5.96 6.13 -105.08 -0.64 -6.60 16 4 C 0.55 9.38 7.94 34.41 0.27 9.65 16 5 O -0.53 -9.69 14.10 -19.28 -0.27 -9.96 16 6 O -0.34 -4.95 8.23 -40.65 -0.33 -5.28 16 7 C 0.10 1.23 2.09 -26.53 -0.06 1.18 16 8 H 0.08 1.08 7.16 -51.93 -0.37 0.71 16 9 C -0.14 -1.49 3.05 -90.35 -0.28 -1.77 16 10 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 11 C -0.11 -1.07 5.10 -26.54 -0.14 -1.20 16 12 C -0.12 -1.03 3.31 -90.35 -0.30 -1.33 16 13 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.10 -0.92 5.10 -26.53 -0.14 -1.06 16 15 C -0.12 -1.11 3.07 -90.34 -0.28 -1.39 16 16 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 17 C 0.06 0.49 5.60 -3.76 -0.02 0.47 16 18 N -0.53 -4.52 5.21 -234.36 -1.22 -5.74 16 19 C 0.06 0.56 5.60 -3.75 -0.02 0.53 16 20 C 0.06 0.44 5.60 -3.74 -0.02 0.42 16 21 C 0.08 1.46 11.87 -16.97 -0.20 1.26 16 22 N -0.30 -6.45 12.50 30.87 0.39 -6.06 16 23 N -0.31 -6.97 3.56 -57.77 -0.21 -7.18 16 24 C 0.25 6.14 5.78 -5.20 -0.03 6.11 16 25 C -0.54 -14.42 9.39 -34.44 -0.32 -14.74 16 26 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 27 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 28 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16 29 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 32 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.62 6.51 -51.93 -0.34 1.28 16 35 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 36 H 0.07 0.87 7.60 -51.93 -0.39 0.47 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.78 7.60 -51.93 -0.39 0.39 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.18 2.63 8.06 -52.48 -0.42 2.21 16 47 H 0.06 1.39 7.62 -51.93 -0.40 0.99 16 48 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 49 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -29.15 383.37 -10.41 -39.56 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.76 Total: 2.18 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.50 Total: -5.31 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.30 Total: -42.53 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.61 Total: -15.24 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.15 -10.41 -39.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772394594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.217 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.18 seconds