Wall clock time and date at job start Wed Apr 1 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38123 * 126.29446 * 2 1 4 4 C 1.47290 * 126.42664 * 0.02562 * 3 2 1 5 5 O 1.21521 * 119.99913 * 0.02562 * 4 3 2 6 6 O 1.34760 * 119.99675 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99442 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.54932 * 29.81908 * 7 6 4 9 9 C 1.53189 * 109.54432 * 269.54323 * 7 6 4 10 10 H 1.09001 * 109.65844 * 61.94786 * 9 7 6 11 11 C 1.53188 * 109.11755 * 301.12145 * 9 7 6 12 12 C 1.53184 * 109.03567 * 299.05813 * 11 9 7 13 13 H 1.09002 * 109.65449 * 181.77493 * 12 11 9 14 14 C 1.53177 * 109.11877 * 60.94402 * 12 11 9 15 15 C 1.53201 * 109.54373 * 150.00267 * 7 6 4 16 16 H 1.09001 * 109.65740 * 298.05573 * 15 7 6 17 17 C 1.53140 * 109.09665 * 177.93961 * 15 7 6 18 18 N 1.46879 * 109.40171 * 300.46110 * 17 15 7 19 19 C 1.46900 * 111.07471 * 62.04961 * 18 17 15 20 20 C 1.46902 * 111.07816 * 297.94815 * 18 17 15 21 21 C 1.41344 * 107.14503 * 180.02562 * 3 2 1 22 22 N 1.30431 * 108.01197 * 359.73408 * 21 3 2 23 23 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 24 24 C 1.46491 * 125.74900 * 359.97341 * 23 2 1 25 25 C 1.50702 * 109.46957 * 90.00099 * 24 23 2 26 26 H 1.08002 * 120.00299 * 0.02562 * 25 24 23 27 27 C 1.37884 * 119.99942 * 179.72213 * 25 24 23 28 28 N 1.31514 * 119.99698 * 0.28408 * 27 25 24 29 29 Si 1.86794 * 119.99837 * 180.27476 * 27 25 24 30 30 H 1.48496 * 109.47341 * 0.02562 * 29 27 25 31 31 H 1.48508 * 109.46983 * 120.00379 * 29 27 25 32 32 H 1.48503 * 109.47491 * 240.00192 * 29 27 25 33 33 H 1.08993 * 109.46826 * 270.00042 * 1 2 3 34 34 H 1.09001 * 109.47180 * 30.00515 * 1 2 3 35 35 H 1.08998 * 109.46656 * 150.00205 * 1 2 3 36 36 H 1.08999 * 109.54004 * 58.92233 * 11 9 7 37 37 H 1.08998 * 109.53864 * 179.09747 * 11 9 7 38 38 H 1.09003 * 109.54448 * 179.15633 * 14 12 11 39 39 H 1.08999 * 109.54636 * 58.87748 * 14 12 11 40 40 H 1.08992 * 109.48214 * 60.44229 * 17 15 7 41 41 H 1.08996 * 109.48190 * 180.48369 * 17 15 7 42 42 H 1.09004 * 109.48397 * 57.93974 * 19 18 17 43 43 H 1.08998 * 109.48850 * 177.96821 * 19 18 17 44 44 H 1.08995 * 109.48622 * 182.01428 * 20 18 17 45 45 H 1.09003 * 109.48495 * 302.06340 * 20 18 17 46 46 H 1.08003 * 125.99161 * 180.02562 * 21 3 2 47 47 H 1.09004 * 109.47166 * 330.00365 * 24 23 2 48 48 H 1.08994 * 109.47507 * 210.00071 * 24 23 2 49 49 H 0.97005 * 119.99651 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0005 5 8 0.7018 2.7873 0.0015 6 8 2.8015 3.5097 0.0010 7 6 2.2982 4.8716 0.0021 8 1 1.3360 4.9045 0.5131 9 6 2.1310 5.3573 -1.4411 10 1 1.4001 4.7335 -1.9556 11 6 3.4846 5.2855 -2.1547 12 6 4.4798 6.1980 -1.4312 13 1 5.4385 6.1788 -1.9496 14 6 4.6480 5.7126 0.0119 15 6 3.2936 5.7853 0.7243 16 1 3.3961 5.4681 1.7620 17 6 2.7780 7.2264 0.6745 18 7 2.6341 7.6451 -0.7259 19 6 1.6494 6.8111 -1.4280 20 6 3.9295 7.6272 -1.4185 21 6 3.6599 0.6496 -0.0006 22 7 3.6340 -0.6544 0.0048 23 7 2.3015 -1.0818 -0.0005 24 6 1.8499 -2.4754 -0.0006 25 6 1.6945 -2.9530 -1.4214 26 1 1.9110 -2.2853 -2.2423 27 6 1.2819 -4.2443 -1.6735 28 7 1.0187 -5.0574 -0.6739 29 14 1.0967 -4.8386 -3.4346 30 1 1.4518 -3.7395 -4.3679 31 1 2.0006 -5.9942 -3.6647 32 1 -0.3090 -5.2549 -3.6715 33 1 -0.3633 0.0000 1.0276 34 1 -0.3633 0.8899 -0.5139 35 1 -0.3632 -0.8900 -0.5138 36 1 3.8517 4.2593 -2.1375 37 1 3.3702 5.6146 -3.1875 38 1 5.3666 6.3485 0.5290 39 1 5.0047 4.6827 0.0110 40 1 1.8101 7.2836 1.1724 41 1 3.4861 7.8834 1.1794 42 1 0.6897 6.8715 -0.9147 43 1 1.5366 7.1661 -2.4524 44 1 3.7989 7.9756 -2.4430 45 1 4.6290 8.2814 -0.8981 46 1 4.5461 1.2669 -0.0004 47 1 0.8913 -2.5467 0.5136 48 1 2.5846 -3.0955 0.5129 49 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772394594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:13 Heat of formation + Delta-G solvation = -41.418907 kcal Electronic energy + Delta-G solvation = -31253.537279 eV Core-core repulsion = 27180.205919 eV Total energy + Delta-G solvation = -4073.331360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.78017 -42.34709 -40.56284 -37.30560 -35.86773 -34.18805 -33.93585 -33.73260 -33.25412 -32.77937 -29.49634 -28.42875 -27.00109 -26.84722 -25.48016 -24.25261 -23.27842 -22.88581 -22.63641 -21.67053 -20.50365 -19.13900 -18.91731 -18.67810 -17.42253 -17.09057 -16.90311 -16.38622 -16.12889 -16.01917 -15.89853 -15.73517 -15.32828 -15.07427 -14.85313 -14.62722 -14.42717 -14.28651 -14.11340 -13.73081 -13.66633 -13.54089 -13.47791 -13.19194 -13.14596 -13.00841 -12.74666 -12.72984 -12.37051 -12.34001 -12.30801 -12.13404 -11.88278 -11.87464 -11.85073 -11.57508 -11.30549 -10.87380 -10.79016 -10.73485 -10.35950 -9.69758 -9.10755 -8.41216 -6.57567 0.40421 1.15004 1.34778 1.36461 1.40779 1.50696 1.89159 2.21332 2.30452 2.91427 3.06012 3.45596 3.46871 3.62880 3.70057 3.80936 3.90920 3.93088 4.00505 4.08628 4.11875 4.19358 4.28803 4.30827 4.45914 4.51779 4.53332 4.58429 4.59776 4.73370 4.74765 4.77301 4.84866 4.92001 4.93193 4.94280 5.01598 5.01926 5.06073 5.16476 5.17716 5.24668 5.29535 5.40272 5.45764 5.48855 5.58497 5.70563 5.93689 6.10693 6.15883 6.50920 6.69097 6.89578 7.13903 8.67129 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.002441 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.108118 B =11466.421634 C =11589.041832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.160 3.840 3 C -0.322 4.322 4 C 0.555 3.445 5 O -0.544 6.544 6 O -0.340 6.340 7 C 0.098 3.902 8 H 0.070 0.930 9 C -0.137 4.137 10 H 0.059 0.941 11 C -0.106 4.106 12 C -0.119 4.119 13 H 0.089 0.911 14 C -0.104 4.104 15 C -0.115 4.115 16 H 0.087 0.913 17 C 0.063 3.937 18 N -0.530 5.530 19 C 0.067 3.933 20 C 0.059 3.941 21 C 0.097 3.903 22 N -0.334 5.334 23 N -0.333 5.333 24 C 0.266 3.734 25 C -0.558 4.558 26 H 0.051 0.949 27 C 0.026 3.974 28 N -0.915 5.915 29 Si 0.971 3.029 30 H -0.273 1.273 31 H -0.273 1.273 32 H -0.267 1.267 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.220 0.780 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 26.426 0.897 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.024 3.976 3 C -0.335 4.335 4 C 0.403 3.597 5 O -0.436 6.436 6 O -0.256 6.256 7 C 0.043 3.957 8 H 0.088 0.912 9 C -0.158 4.158 10 H 0.078 0.922 11 C -0.143 4.143 12 C -0.138 4.138 13 H 0.108 0.892 14 C -0.141 4.141 15 C -0.135 4.135 16 H 0.105 0.895 17 C -0.065 4.065 18 N -0.250 5.250 19 C -0.062 4.062 20 C -0.069 4.069 21 C -0.090 4.090 22 N -0.153 5.153 23 N -0.109 5.109 24 C 0.148 3.852 25 C -0.596 4.596 26 H 0.070 0.930 27 C -0.176 4.176 28 N -0.553 5.553 29 Si 0.795 3.205 30 H -0.198 1.198 31 H -0.199 1.199 32 H -0.192 1.192 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.237 0.763 47 H 0.073 0.927 48 H 0.053 0.947 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.554 25.614 0.962 26.034 hybrid contribution -0.472 -1.339 -0.718 1.591 sum 4.082 24.275 0.245 24.617 Atomic orbital electron populations 1.20676 0.85183 1.04711 1.04592 1.21956 0.96092 0.86321 0.93275 1.19080 0.93812 0.90123 1.30466 1.19815 0.83545 0.85081 0.71299 1.90728 1.18653 1.84716 1.49542 1.86587 1.38842 1.16196 1.83988 1.22879 0.98238 0.77447 0.97124 0.91194 1.22164 0.98824 0.99661 0.95126 0.92229 1.21532 0.93935 0.99936 0.98943 1.21756 0.99427 0.96521 0.96129 0.89228 1.21540 0.95673 1.01904 0.95022 1.21965 0.95466 0.96098 0.99986 0.89474 1.22261 1.02527 0.91743 0.89988 1.62482 1.09203 1.50902 1.02457 1.22143 0.95663 0.87797 1.00604 1.22271 0.89946 0.94644 1.00039 1.24472 0.97713 0.91258 0.95580 1.77162 0.98257 1.14086 1.25806 1.49186 1.03336 1.07906 1.50489 1.19459 0.95561 0.71874 0.98336 1.21412 1.48210 0.98473 0.91458 0.93022 1.25711 0.93754 0.95877 1.02256 1.69996 1.44740 1.07571 1.32967 0.85303 0.78519 0.78189 0.78473 1.19789 1.19854 1.19224 0.88386 0.88168 0.90492 0.93105 0.91125 0.89834 0.92230 0.90228 0.87810 0.90477 0.89142 0.90006 0.89005 0.76344 0.92686 0.94739 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.32 9.34 71.24 0.67 -2.65 16 2 C 0.16 6.56 7.01 42.17 0.30 6.86 16 3 C -0.32 -12.03 6.13 -20.16 -0.12 -12.15 16 4 C 0.56 18.84 7.94 70.20 0.56 19.40 16 5 O -0.54 -19.86 14.10 19.77 0.28 -19.59 16 6 O -0.34 -9.55 8.23 -56.70 -0.47 -10.02 16 7 C 0.10 2.24 2.09 30.72 0.06 2.30 16 8 H 0.07 1.80 7.16 -2.39 -0.02 1.78 16 9 C -0.14 -2.87 3.05 -10.62 -0.03 -2.90 16 10 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 11 C -0.11 -2.01 5.10 30.72 0.16 -1.85 16 12 C -0.12 -1.69 3.31 -10.62 -0.04 -1.73 16 13 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 14 C -0.10 -1.58 5.10 30.72 0.16 -1.43 16 15 C -0.12 -1.92 3.07 -10.61 -0.03 -1.95 16 16 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 17 C 0.06 0.84 5.60 86.35 0.48 1.32 16 18 N -0.53 -7.59 5.21 -895.38 -4.66 -12.26 16 19 C 0.07 1.09 5.60 86.35 0.48 1.58 16 20 C 0.06 0.70 5.60 86.36 0.48 1.19 16 21 C 0.10 3.50 11.87 85.67 1.02 4.51 16 22 N -0.33 -14.72 12.50 -56.24 -0.70 -15.42 16 23 N -0.33 -15.39 3.56 -336.67 -1.20 -16.58 16 24 C 0.27 13.57 5.78 85.64 0.50 14.07 16 25 C -0.56 -30.45 9.39 25.60 0.24 -30.21 16 26 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 27 C 0.03 1.37 5.46 84.66 0.46 1.84 16 28 N -0.91 -50.59 13.29 21.45 0.28 -50.30 16 29 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 30 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 31 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 32 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 33 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.10 3.42 6.51 -2.39 -0.02 3.41 16 35 H 0.08 2.86 7.69 -2.39 -0.02 2.84 16 36 H 0.05 1.18 7.60 -2.39 -0.02 1.16 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.12 7.60 -2.39 -0.02 1.10 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.22 5.95 8.06 -2.91 -0.02 5.93 16 47 H 0.06 2.78 7.62 -2.38 -0.02 2.76 16 48 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -63.30 383.37 1.84 -61.46 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.95 Total: 20.18 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.34 Total: -1.82 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -6.28 Total: -94.57 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.19 Total: -29.61 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -63.30 1.84 -61.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772394594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.040 kcal (2) G-P(sol) polarization free energy of solvation -63.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds