Wall clock time and date at job start Wed Apr 1 2020 04:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47617 * 2 1 4 4 C 1.50701 * 109.47275 * 240.00034 * 2 1 3 5 5 H 1.08000 * 120.00216 * 240.84216 * 4 2 1 6 6 C 1.37874 * 119.99958 * 60.83527 * 4 2 1 7 7 N 1.31516 * 120.00180 * 194.58104 * 6 4 2 8 8 Si 1.86799 * 119.99855 * 14.58142 * 6 4 2 9 9 H 1.48499 * 109.46878 * 84.45345 * 8 6 4 10 10 H 1.48500 * 109.47115 * 204.45242 * 8 6 4 11 11 H 1.48496 * 109.47436 * 324.45427 * 8 6 4 12 12 C 1.53001 * 109.47194 * 120.00282 * 2 1 3 13 13 S 1.81407 * 109.47063 * 299.99891 * 12 2 1 14 14 O 1.42099 * 110.54038 * 68.37131 * 13 12 2 15 15 O 1.42097 * 110.54197 * 291.62515 * 13 12 2 16 16 N 1.65601 * 104.45097 * 179.97438 * 13 12 2 17 17 C 1.47059 * 136.05760 * 269.95040 * 16 13 12 18 18 C 1.53614 * 88.00542 * 152.96628 * 17 16 13 19 19 C 1.53006 * 114.20212 * 272.44999 * 18 17 16 20 20 C 1.52997 * 114.23990 * 139.59667 * 18 17 16 21 21 C 1.47066 * 136.05383 * 89.99739 * 16 13 12 22 22 H 1.09006 * 113.46647 * 92.25059 * 21 16 13 23 23 C 1.52997 * 113.47013 * 321.86523 * 21 16 13 24 24 H 1.09003 * 109.99037 * 201.49352 * 23 21 16 25 25 C 1.54106 * 109.87615 * 80.41468 * 23 21 16 26 26 C 1.54814 * 104.30173 * 238.47569 * 25 23 21 27 27 C 1.55221 * 101.99036 * 339.26409 * 26 25 23 28 28 O 1.43742 * 109.87951 * 322.58364 * 23 21 16 29 29 H 1.09001 * 109.46948 * 310.23485 * 1 2 3 30 30 H 1.08996 * 109.46868 * 70.22729 * 1 2 3 31 31 H 1.09000 * 109.47310 * 190.23128 * 1 2 3 32 32 H 1.08996 * 109.47592 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46985 * 300.00140 * 3 2 1 34 34 H 1.09006 * 109.46473 * 59.99736 * 3 2 1 35 35 H 0.97001 * 120.00036 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.47408 * 180.02562 * 12 2 1 37 37 H 1.09002 * 109.47378 * 59.99047 * 12 2 1 38 38 H 1.09001 * 113.46654 * 267.69688 * 17 16 13 39 39 H 1.09000 * 113.46969 * 38.07419 * 17 16 13 40 40 H 1.09000 * 109.46705 * 153.55048 * 19 18 17 41 41 H 1.09000 * 109.47302 * 273.55249 * 19 18 17 42 42 H 1.08997 * 109.47141 * 33.55454 * 19 18 17 43 43 H 1.09006 * 109.47086 * 326.42730 * 20 18 17 44 44 H 1.08997 * 109.47481 * 86.42651 * 20 18 17 45 45 H 1.08998 * 109.46683 * 206.43389 * 20 18 17 46 46 H 1.08992 * 110.48776 * 357.22213 * 25 23 21 47 47 H 1.09004 * 110.48716 * 119.73373 * 25 23 21 48 48 H 1.09006 * 110.90051 * 97.38398 * 26 25 23 49 49 H 1.08995 * 110.90767 * 220.98340 * 26 25 23 50 50 H 1.09001 * 110.51975 * 278.38691 * 27 26 25 51 51 H 1.08997 * 110.78012 * 155.50060 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6420 -1.5964 -1.1315 6 6 1.7136 -0.2294 -2.4826 7 7 1.8969 -0.9847 -3.5435 8 14 1.0213 1.4952 -2.6722 9 1 2.1372 2.4736 -2.7239 10 1 0.2328 1.5768 -3.9280 11 1 0.1435 1.8062 -1.5156 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4099 2.8545 16 7 2.0530 -0.7409 3.9937 17 6 1.6140 -1.8886 4.8017 18 6 3.0952 -2.2154 5.0447 19 6 3.7249 -3.1069 3.9724 20 6 3.4133 -2.6644 6.4723 21 6 3.2814 -0.7113 4.8016 22 1 3.1912 -0.1109 5.7069 23 6 4.5354 -0.3757 3.9919 24 1 5.4233 -0.7289 4.5163 25 6 4.6266 1.1472 3.7744 26 6 4.6469 1.3132 2.2353 27 6 5.1058 -0.0932 1.7653 28 8 4.4578 -0.9888 2.6941 29 1 -0.3633 0.6638 0.7845 30 1 -0.3633 0.3476 -0.9671 31 1 -0.3634 -1.0113 0.1825 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6722 -0.6464 -4.4244 36 1 3.1300 -0.7209 1.2495 37 1 1.6765 -1.7490 1.2493 38 1 1.0793 -1.6025 5.7074 39 1 1.0888 -2.6499 4.2251 40 1 4.7980 -2.9204 3.9293 41 1 3.5476 -4.1535 4.2199 42 1 3.2779 -2.8817 3.0042 43 1 2.7584 -2.1442 7.1713 44 1 3.2561 -3.7395 6.5586 45 1 4.4521 -2.4293 6.7040 46 1 3.7563 1.6462 4.2005 47 1 5.5436 1.5410 4.2127 48 1 3.6514 1.5441 1.8559 49 1 5.3629 2.0785 1.9360 50 1 6.1897 -0.1849 1.8364 51 1 4.7712 -0.2887 0.7466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:28 Heat of formation + Delta-G solvation = -51.820087 kcal Electronic energy + Delta-G solvation = -33087.465978 eV Core-core repulsion = 29116.834789 eV Total energy + Delta-G solvation = -3970.631189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82372 -38.56887 -36.65067 -36.54155 -35.39635 -32.26422 -31.93859 -31.72299 -30.07281 -27.55843 -27.20954 -26.40693 -25.42295 -25.13529 -24.95398 -22.03560 -20.93523 -19.67297 -18.86817 -18.14935 -17.61710 -16.73540 -16.14371 -15.87869 -15.69257 -15.40705 -15.18237 -15.01045 -14.38415 -14.20985 -13.96789 -13.60948 -13.15833 -13.05770 -13.02516 -12.87083 -12.59430 -12.46782 -12.33172 -12.15830 -12.00239 -11.92936 -11.59619 -11.55636 -11.46170 -11.36717 -11.09435 -11.08160 -10.96959 -10.77748 -10.67675 -10.52246 -10.25765 -10.10859 -10.00108 -9.95544 -9.77257 -9.54557 -9.05615 -8.84174 -8.67156 -8.43590 -6.17393 -4.14023 0.79025 3.01581 3.24921 3.34577 3.38958 3.85754 4.16079 4.28799 4.35223 4.43533 4.57750 4.68983 4.89319 4.98486 5.04604 5.12228 5.15420 5.29454 5.37901 5.42127 5.47853 5.52986 5.56936 5.60284 5.64540 5.71263 5.79112 5.87057 5.94558 5.96294 6.03347 6.05009 6.09580 6.11077 6.16560 6.27529 6.38893 6.38978 6.50058 6.52532 6.57029 6.64198 6.69010 6.73847 6.94080 7.01592 7.17852 7.34039 7.65444 8.42554 8.87042 9.47085 10.95116 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.004988 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.146515 B = 5611.855685 C = 5859.078537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.055 3.945 3 C -0.183 4.183 4 C -0.503 4.503 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.871 3.129 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.247 1.247 12 C -0.578 4.578 13 S 2.610 3.390 14 O -0.969 6.969 15 O -0.959 6.959 16 N -1.031 6.031 17 C 0.133 3.867 18 C -0.095 4.095 19 C -0.118 4.118 20 C -0.136 4.136 21 C 0.166 3.834 22 H 0.098 0.902 23 C 0.062 3.938 24 H 0.081 0.919 25 C -0.153 4.153 26 C -0.180 4.180 27 C 0.026 3.974 28 O -0.360 6.360 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.121 0.879 49 H 0.073 0.927 50 H 0.058 0.942 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 -1.083 19.051 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 C -0.240 4.240 4 C -0.541 4.541 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.703 3.297 9 H -0.209 1.209 10 H -0.230 1.230 11 H -0.173 1.173 12 C -0.711 4.711 13 S 2.713 3.287 14 O -0.960 6.960 15 O -0.949 6.949 16 N -0.867 5.867 17 C 0.007 3.993 18 C -0.098 4.098 19 C -0.175 4.175 20 C -0.194 4.194 21 C 0.059 3.941 22 H 0.116 0.884 23 C 0.003 3.997 24 H 0.098 0.902 25 C -0.191 4.191 26 C -0.217 4.217 27 C -0.050 4.050 28 O -0.280 6.280 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.168 0.832 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.085 0.915 48 H 0.138 0.862 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.711 -0.389 18.740 19.595 hybrid contribution 0.151 0.750 -0.574 0.956 sum 5.862 0.360 18.166 19.092 Atomic orbital electron populations 1.22688 0.97388 1.01214 1.01505 1.18230 0.92245 0.91528 0.92765 1.22915 1.02195 0.98199 1.00689 1.20642 1.33681 1.12464 0.87354 0.90310 1.24952 0.94587 0.97136 0.95850 1.69939 1.48040 1.35698 0.98864 0.87489 0.79806 0.85935 0.76488 1.20868 1.22972 1.17284 1.30672 1.14222 1.12314 1.13912 1.05045 0.73730 0.74671 0.75265 1.93526 1.29807 1.86720 1.85970 1.93439 1.77395 1.38395 1.85706 1.60042 1.31425 1.48577 1.46682 1.22566 0.95721 0.86742 0.94289 1.22464 0.96072 0.94704 0.96524 1.21510 1.01183 0.96931 0.97898 1.21702 1.01699 1.01608 0.94364 1.22472 0.83324 0.95934 0.92386 0.88403 1.23019 0.97186 0.93108 0.86410 0.90151 1.23045 1.03230 0.94986 0.97830 1.23758 1.05886 0.97046 0.95047 1.23872 0.97042 0.88885 0.95201 1.89016 1.78558 1.43747 1.16644 0.94747 0.91540 0.92455 0.91669 0.93041 0.93308 0.92496 0.83213 0.86140 0.90342 0.90536 0.91611 0.92992 0.90816 0.92371 0.92007 0.92166 0.88714 0.91549 0.86161 0.90868 0.92355 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 6.95 37.16 0.26 -3.71 16 2 C 0.06 1.27 0.52 -155.66 -0.08 1.19 16 3 C -0.18 -4.04 6.26 37.16 0.23 -3.81 16 4 C -0.50 -13.39 8.62 -34.44 -0.30 -13.68 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.17 5.31 -17.82 -0.09 2.07 16 7 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 8 Si 0.87 21.48 22.79 -169.99 -3.87 17.61 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.25 -5.76 4.67 56.52 0.26 -5.50 16 12 C -0.58 -11.23 4.44 37.16 0.17 -11.07 16 13 S 2.61 48.26 4.60 -107.50 -0.49 47.77 16 14 O -0.97 -20.77 15.92 -57.54 -0.92 -21.69 16 15 O -0.96 -18.08 9.80 -57.54 -0.56 -18.65 16 16 N -1.03 -14.82 3.35 -117.63 -0.39 -15.22 16 17 C 0.13 1.53 7.80 -8.45 -0.07 1.47 16 18 C -0.10 -0.93 1.44 -153.93 -0.22 -1.15 16 19 C -0.12 -1.26 7.58 37.16 0.28 -0.98 16 20 C -0.14 -0.95 9.31 37.16 0.35 -0.61 16 21 C 0.17 1.88 3.20 -72.40 -0.23 1.64 16 22 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 23 C 0.06 0.71 2.76 -26.16 -0.07 0.64 16 24 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 25 C -0.15 -1.90 5.88 -25.20 -0.15 -2.05 16 26 C -0.18 -2.57 6.46 -24.60 -0.16 -2.73 16 27 C 0.03 0.36 6.51 38.33 0.25 0.61 16 28 O -0.36 -4.90 5.25 -35.23 -0.19 -5.08 16 29 H 0.03 0.76 6.21 -51.93 -0.32 0.44 16 30 H 0.07 1.58 4.32 -51.93 -0.22 1.35 16 31 H 0.06 1.28 8.11 -51.93 -0.42 0.85 16 32 H 0.06 1.32 6.84 -51.93 -0.36 0.97 16 33 H 0.05 1.18 2.28 -51.93 -0.12 1.06 16 34 H 0.05 1.01 5.41 -51.93 -0.28 0.73 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.15 2.72 2.81 -51.93 -0.15 2.57 16 37 H 0.12 2.27 8.14 -51.92 -0.42 1.85 16 38 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 39 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 40 H 0.06 0.68 7.00 -51.93 -0.36 0.32 16 41 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 42 H 0.07 0.96 6.97 -51.93 -0.36 0.59 16 43 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 44 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 1.31 6.11 -51.93 -0.32 0.99 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.12 2.03 2.53 -51.93 -0.13 1.90 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.11 1.70 7.05 -51.93 -0.37 1.34 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -31.80 356.65 -8.26 -40.06 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.14 Total: 7.52 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 0.16 Total: -32.15 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.38 Total: -40.76 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.67 Total: -45.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -3.87 Total: 17.61 kcal Atomic # 16 Polarization: 48.26 SS G_CDS: -0.49 Total: 47.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.80 -8.26 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.756 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds