Wall clock time and date at job start Wed Apr 1 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47617 * 2 1 4 4 C 1.50701 * 109.47275 * 240.00034 * 2 1 3 5 5 H 1.08000 * 120.00216 * 240.84216 * 4 2 1 6 6 C 1.37874 * 119.99958 * 60.83527 * 4 2 1 7 7 N 1.31516 * 120.00180 * 194.58104 * 6 4 2 8 8 Si 1.86799 * 119.99855 * 14.58142 * 6 4 2 9 9 H 1.48499 * 109.46878 * 84.45345 * 8 6 4 10 10 H 1.48500 * 109.47115 * 204.45242 * 8 6 4 11 11 H 1.48496 * 109.47436 * 324.45427 * 8 6 4 12 12 C 1.53001 * 109.47194 * 120.00282 * 2 1 3 13 13 S 1.81407 * 109.47063 * 299.99891 * 12 2 1 14 14 O 1.42099 * 110.54038 * 68.37131 * 13 12 2 15 15 O 1.42097 * 110.54197 * 291.62515 * 13 12 2 16 16 N 1.65601 * 104.45097 * 179.97438 * 13 12 2 17 17 C 1.47059 * 136.05760 * 269.95040 * 16 13 12 18 18 C 1.53614 * 88.00542 * 152.96628 * 17 16 13 19 19 C 1.53006 * 114.20212 * 272.44999 * 18 17 16 20 20 C 1.52997 * 114.23990 * 139.59667 * 18 17 16 21 21 C 1.47066 * 136.05383 * 89.99739 * 16 13 12 22 22 H 1.09006 * 113.46647 * 92.25059 * 21 16 13 23 23 C 1.52997 * 113.47013 * 321.86523 * 21 16 13 24 24 H 1.09003 * 109.99037 * 201.49352 * 23 21 16 25 25 C 1.54106 * 109.87615 * 80.41468 * 23 21 16 26 26 C 1.54814 * 104.30173 * 238.47569 * 25 23 21 27 27 C 1.55221 * 101.99036 * 339.26409 * 26 25 23 28 28 O 1.43742 * 109.87951 * 322.58364 * 23 21 16 29 29 H 1.09001 * 109.46948 * 310.23485 * 1 2 3 30 30 H 1.08996 * 109.46868 * 70.22729 * 1 2 3 31 31 H 1.09000 * 109.47310 * 190.23128 * 1 2 3 32 32 H 1.08996 * 109.47592 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46985 * 300.00140 * 3 2 1 34 34 H 1.09006 * 109.46473 * 59.99736 * 3 2 1 35 35 H 0.97001 * 120.00036 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.47408 * 180.02562 * 12 2 1 37 37 H 1.09002 * 109.47378 * 59.99047 * 12 2 1 38 38 H 1.09001 * 113.46654 * 267.69688 * 17 16 13 39 39 H 1.09000 * 113.46969 * 38.07419 * 17 16 13 40 40 H 1.09000 * 109.46705 * 153.55048 * 19 18 17 41 41 H 1.09000 * 109.47302 * 273.55249 * 19 18 17 42 42 H 1.08997 * 109.47141 * 33.55454 * 19 18 17 43 43 H 1.09006 * 109.47086 * 326.42730 * 20 18 17 44 44 H 1.08997 * 109.47481 * 86.42651 * 20 18 17 45 45 H 1.08998 * 109.46683 * 206.43389 * 20 18 17 46 46 H 1.08992 * 110.48776 * 357.22213 * 25 23 21 47 47 H 1.09004 * 110.48716 * 119.73373 * 25 23 21 48 48 H 1.09006 * 110.90051 * 97.38398 * 26 25 23 49 49 H 1.08995 * 110.90767 * 220.98340 * 26 25 23 50 50 H 1.09001 * 110.51975 * 278.38691 * 27 26 25 51 51 H 1.08997 * 110.78012 * 155.50060 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6420 -1.5964 -1.1315 6 6 1.7136 -0.2294 -2.4826 7 7 1.8969 -0.9847 -3.5435 8 14 1.0213 1.4952 -2.6722 9 1 2.1372 2.4736 -2.7239 10 1 0.2328 1.5768 -3.9280 11 1 0.1435 1.8062 -1.5156 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4099 2.8545 16 7 2.0530 -0.7409 3.9937 17 6 1.6140 -1.8886 4.8017 18 6 3.0952 -2.2154 5.0447 19 6 3.7249 -3.1069 3.9724 20 6 3.4133 -2.6644 6.4723 21 6 3.2814 -0.7113 4.8016 22 1 3.1912 -0.1109 5.7069 23 6 4.5354 -0.3757 3.9919 24 1 5.4233 -0.7289 4.5163 25 6 4.6266 1.1472 3.7744 26 6 4.6469 1.3132 2.2353 27 6 5.1058 -0.0932 1.7653 28 8 4.4578 -0.9888 2.6941 29 1 -0.3633 0.6638 0.7845 30 1 -0.3633 0.3476 -0.9671 31 1 -0.3634 -1.0113 0.1825 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6722 -0.6464 -4.4244 36 1 3.1300 -0.7209 1.2495 37 1 1.6765 -1.7490 1.2493 38 1 1.0793 -1.6025 5.7074 39 1 1.0888 -2.6499 4.2251 40 1 4.7980 -2.9204 3.9293 41 1 3.5476 -4.1535 4.2199 42 1 3.2779 -2.8817 3.0042 43 1 2.7584 -2.1442 7.1713 44 1 3.2561 -3.7395 6.5586 45 1 4.4521 -2.4293 6.7040 46 1 3.7563 1.6462 4.2005 47 1 5.5436 1.5410 4.2127 48 1 3.6514 1.5441 1.8559 49 1 5.3629 2.0785 1.9360 50 1 6.1897 -0.1849 1.8364 51 1 4.7712 -0.2887 0.7466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:27 Heat of formation + Delta-G solvation = -73.550163 kcal Electronic energy + Delta-G solvation = -33088.408265 eV Core-core repulsion = 29116.834789 eV Total energy + Delta-G solvation = -3971.573476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74804 -39.62236 -38.43320 -38.01687 -36.93379 -34.05469 -33.17786 -32.68910 -31.06453 -28.99774 -28.24049 -28.06675 -27.14311 -26.33940 -26.08160 -23.05583 -21.93174 -21.46861 -20.00245 -19.21244 -18.94560 -18.12524 -17.81640 -17.37107 -16.93614 -16.80130 -16.53501 -16.30469 -15.40575 -15.34861 -15.03250 -14.97707 -14.75451 -14.64585 -14.44595 -14.21877 -14.14023 -14.00506 -13.48246 -13.22519 -13.16180 -12.92985 -12.82276 -12.79250 -12.75746 -12.67211 -12.55560 -12.49835 -12.31590 -12.08012 -11.93854 -11.90397 -11.80366 -11.76705 -11.41450 -11.22157 -10.92350 -10.71894 -10.68358 -10.52421 -10.48977 -9.85452 -8.34969 -6.33849 -0.64378 1.27307 1.32721 1.40422 1.74720 2.28141 2.84174 2.90370 2.98916 3.12170 3.37465 3.60551 3.74372 3.83565 3.96687 4.04787 4.11744 4.19819 4.24177 4.27866 4.40371 4.44808 4.49006 4.57669 4.59664 4.65276 4.65573 4.73932 4.76571 4.82714 4.89501 4.90870 4.95643 5.01561 5.08628 5.10169 5.13606 5.18262 5.27829 5.29485 5.38205 5.42770 5.43948 5.47062 5.60646 5.61431 5.72998 5.75996 6.06185 6.28239 6.68469 7.29902 8.81000 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.004988 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.146515 B = 5611.855685 C = 5859.078537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.184 4.184 4 C -0.496 4.496 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.915 3.085 9 H -0.271 1.271 10 H -0.305 1.305 11 H -0.227 1.227 12 C -0.586 4.586 13 S 2.630 3.370 14 O -1.002 7.002 15 O -0.963 6.963 16 N -1.039 6.039 17 C 0.120 3.880 18 C -0.078 4.078 19 C -0.119 4.119 20 C -0.130 4.130 21 C 0.160 3.840 22 H 0.123 0.877 23 C 0.056 3.944 24 H 0.112 0.888 25 C -0.150 4.150 26 C -0.190 4.190 27 C 0.027 3.973 28 O -0.374 6.374 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.266 0.734 36 H 0.161 0.839 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -0.412 22.524 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.047 3.953 3 C -0.240 4.240 4 C -0.535 4.535 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.574 5.574 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.234 1.234 11 H -0.152 1.152 12 C -0.717 4.717 13 S 2.732 3.268 14 O -0.993 6.993 15 O -0.953 6.953 16 N -0.878 5.878 17 C -0.005 4.005 18 C -0.080 4.080 19 C -0.176 4.176 20 C -0.188 4.188 21 C 0.054 3.946 22 H 0.141 0.859 23 C -0.002 4.002 24 H 0.130 0.870 25 C -0.187 4.187 26 C -0.227 4.227 27 C -0.049 4.049 28 O -0.293 6.293 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.178 0.822 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.104 0.896 50 H 0.100 0.900 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.821 0.287 22.214 23.239 hybrid contribution -0.123 0.419 -1.551 1.611 sum 6.697 0.706 20.663 21.733 Atomic orbital electron populations 1.22706 0.97624 1.01513 1.01360 1.18172 0.92055 0.92288 0.92771 1.22891 1.03054 0.97229 1.00839 1.20835 1.32263 1.11374 0.89035 0.93513 1.25624 0.95342 1.00354 0.95648 1.70057 1.50361 1.37525 0.99423 0.86743 0.79912 0.82112 0.76807 1.19769 1.23418 1.15165 1.30699 1.15028 1.11962 1.14041 1.04071 0.72906 0.74574 0.75279 1.93481 1.32013 1.87295 1.86482 1.93441 1.77247 1.38850 1.85776 1.59748 1.33150 1.49076 1.45809 1.22961 0.97458 0.85667 0.94419 1.22357 0.94169 0.93455 0.98041 1.21504 1.01272 0.98030 0.96838 1.21687 1.02870 1.02212 0.92028 1.22910 0.81761 0.97482 0.92425 0.85916 1.23271 0.98587 0.92613 0.85694 0.87028 1.23039 1.03978 0.95548 0.96176 1.23761 1.04702 0.97507 0.96766 1.23805 0.98292 0.88846 0.93969 1.89012 1.78823 1.43883 1.17621 0.93739 0.92278 0.92481 0.90590 0.93831 0.91975 0.92509 0.82202 0.86638 0.88147 0.91121 0.91132 0.91732 0.93803 0.91145 0.91250 0.90740 0.90151 0.88791 0.88821 0.89643 0.89971 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -8.17 6.95 71.98 0.50 -7.67 16 2 C 0.05 2.31 0.52 -52.93 -0.03 2.29 16 3 C -0.18 -8.02 6.26 71.98 0.45 -7.57 16 4 C -0.50 -27.37 8.62 25.60 0.22 -27.15 16 5 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 6 C 0.03 1.66 5.31 84.65 0.45 2.11 16 7 N -0.93 -57.34 13.96 21.45 0.30 -57.04 16 8 Si 0.91 44.53 22.79 68.60 1.56 46.09 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 11 H -0.23 -10.25 4.67 99.48 0.46 -9.79 16 12 C -0.59 -23.21 4.44 71.98 0.32 -22.89 16 13 S 2.63 95.54 4.60 -56.49 -0.26 95.28 16 14 O -1.00 -42.53 15.92 -127.65 -2.03 -44.56 16 15 O -0.96 -35.23 9.80 -127.65 -1.25 -36.48 16 16 N -1.04 -28.05 3.35 -526.08 -1.76 -29.81 16 17 C 0.12 2.50 7.80 83.22 0.65 3.15 16 18 C -0.08 -1.26 1.44 -51.81 -0.07 -1.34 16 19 C -0.12 -2.30 7.58 71.98 0.55 -1.75 16 20 C -0.13 -1.23 9.31 71.98 0.67 -0.56 16 21 C 0.16 3.09 3.20 41.79 0.13 3.23 16 22 H 0.12 1.82 8.10 -2.38 -0.02 1.80 16 23 C 0.06 1.13 2.76 30.97 0.09 1.21 16 24 H 0.11 1.57 8.12 -2.39 -0.02 1.55 16 25 C -0.15 -3.27 5.88 31.59 0.19 -3.08 16 26 C -0.19 -5.13 6.46 31.98 0.21 -4.92 16 27 C 0.03 0.72 6.51 72.74 0.47 1.19 16 28 O -0.37 -9.64 5.25 -148.98 -0.78 -10.43 16 29 H 0.04 1.96 6.21 -2.39 -0.01 1.95 16 30 H 0.06 2.80 4.32 -2.39 -0.01 2.79 16 31 H 0.06 2.60 8.11 -2.39 -0.02 2.58 16 32 H 0.08 3.09 6.84 -2.39 -0.02 3.08 16 33 H 0.04 1.95 2.28 -2.39 -0.01 1.95 16 34 H 0.06 2.53 5.41 -2.38 -0.01 2.52 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.16 5.95 2.81 -2.39 -0.01 5.95 16 37 H 0.12 4.56 8.14 -2.39 -0.02 4.54 16 38 H 0.10 1.67 7.93 -2.39 -0.02 1.65 16 39 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 40 H 0.07 1.29 7.00 -2.39 -0.02 1.27 16 41 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 42 H 0.04 1.11 6.97 -2.39 -0.02 1.10 16 43 H 0.07 0.54 7.90 -2.38 -0.02 0.52 16 44 H 0.07 0.60 8.13 -2.39 -0.02 0.58 16 45 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.08 2.01 6.11 -2.39 -0.01 2.00 16 47 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.09 3.08 2.53 -2.38 -0.01 3.07 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 50 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.08 2.57 7.05 -2.39 -0.02 2.56 16 Total: -1.00 -70.74 356.65 1.26 -69.48 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.70 Total: 31.22 kcal Atomic # 6 Polarization: -68.54 SS G_CDS: 4.79 Total: -63.75 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.46 Total: -86.85 kcal Atomic # 8 Polarization: -87.40 SS G_CDS: -4.07 Total: -91.47 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.56 Total: 46.09 kcal Atomic # 16 Polarization: 95.54 SS G_CDS: -0.26 Total: 95.28 kcal Total: -70.74 1.26 -69.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.072 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds