Wall clock time and date at job start Wed Apr 1 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46944 * 2 1 4 4 C 1.38235 * 120.00292 * 89.99931 * 3 2 1 5 5 C 1.38230 * 119.99899 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00326 * 359.95697 * 5 4 3 7 7 C 1.50702 * 120.00236 * 179.72466 * 6 5 4 8 8 H 1.08993 * 110.88455 * 357.56791 * 7 6 5 9 9 C 1.55162 * 110.99999 * 233.65022 * 7 6 5 10 10 C 1.54327 * 102.93973 * 206.41990 * 9 7 6 11 11 N 1.47029 * 107.26957 * 22.19624 * 10 9 7 12 12 C 1.34778 * 125.64815 * 181.09188 * 11 10 9 13 13 O 1.21582 * 120.00009 * 179.97438 * 12 11 10 14 14 N 1.34779 * 119.99868 * 359.96323 * 12 11 10 15 15 C 1.46495 * 119.99967 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47179 * 179.97438 * 15 14 12 17 17 O 1.21295 * 120.00210 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00237 * 179.97438 * 16 15 14 19 19 C 1.37102 * 120.00118 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99877 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99770 * 180.02562 * 19 18 16 22 22 N 1.31419 * 120.00026 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00229 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47182 * 90.00374 * 23 21 19 25 25 H 1.48503 * 109.47329 * 210.00423 * 23 21 19 26 26 H 1.48503 * 109.47080 * 330.00598 * 23 21 19 27 27 C 1.47419 * 108.70394 * 1.05665 * 11 10 9 28 28 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 29 29 C 1.38234 * 119.99503 * 269.97223 * 3 2 1 30 30 H 1.09003 * 109.47369 * 300.00773 * 1 2 3 31 31 H 1.09000 * 109.47013 * 59.99897 * 1 2 3 32 32 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47214 * 239.99646 * 2 1 3 34 34 H 1.08996 * 109.46710 * 119.99413 * 2 1 3 35 35 H 1.08001 * 119.99730 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.00376 * 179.97438 * 5 4 3 37 37 H 1.08998 * 110.72285 * 324.77994 * 9 7 6 38 38 H 1.08995 * 110.71959 * 88.06058 * 9 7 6 39 39 H 1.08999 * 109.88520 * 262.77612 * 10 9 7 40 40 H 1.08999 * 110.01059 * 141.67990 * 10 9 7 41 41 H 0.97006 * 119.99897 * 359.97438 * 14 12 11 42 42 H 1.09004 * 109.47289 * 299.99689 * 15 14 12 43 43 H 1.09005 * 109.47043 * 59.99440 * 15 14 12 44 44 H 0.96998 * 119.99718 * 0.02562 * 18 16 15 45 45 H 0.96996 * 119.99796 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.37043 * 217.03646 * 27 11 10 47 47 H 1.08997 * 110.37170 * 94.71127 * 27 11 10 48 48 H 1.08001 * 120.00299 * 179.97438 * 28 6 5 49 49 H 1.07997 * 120.00455 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9556 4.0268 -0.0001 7 6 3.4526 5.4495 -0.0002 8 1 3.5366 5.8318 1.0170 9 6 2.5372 6.3582 -0.8628 10 6 3.4903 7.4885 -1.3052 11 7 4.8614 6.9669 -1.2065 12 6 5.9858 7.6556 -1.4856 13 8 7.0714 7.1208 -1.3676 14 7 5.9069 8.9370 -1.8957 15 6 7.1290 9.6858 -2.1986 16 6 6.7676 11.0829 -2.6327 17 8 5.6036 11.4202 -2.6836 18 7 7.7378 11.9580 -2.9634 19 6 7.4090 13.2293 -3.3578 20 1 6.3726 13.5293 -3.4039 21 6 8.4093 14.1313 -3.6992 22 7 8.0941 15.3496 -4.0778 23 14 10.2020 13.6121 -3.6202 24 1 10.6111 13.0441 -4.9298 25 1 11.0461 14.7933 -3.3075 26 1 10.3739 12.5862 -2.5603 27 6 4.8027 5.5661 -0.7507 28 6 2.7266 3.3746 -1.1972 29 6 2.2632 2.0722 -1.1972 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8900 35 1 2.0823 1.5636 2.1324 36 1 2.9035 3.8850 2.1323 37 1 2.1574 5.8136 -1.7272 38 1 1.7170 6.7570 -0.2660 39 1 3.3733 8.3504 -0.6484 40 1 3.2762 7.7753 -2.3347 41 1 5.0407 9.3635 -1.9904 42 1 7.7566 9.7324 -1.3085 43 1 7.6723 9.1856 -3.0003 44 1 8.6687 11.6885 -2.9223 45 1 8.7924 15.9794 -4.3158 46 1 5.6315 5.3516 -0.0760 47 1 4.8221 4.8884 -1.6041 48 1 2.9072 3.8834 -2.1326 49 1 2.0832 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458775708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:49 Heat of formation + Delta-G solvation = -45.477201 kcal Electronic energy + Delta-G solvation = -28729.071543 eV Core-core repulsion = 24655.564202 eV Total energy + Delta-G solvation = -4073.507341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.60742 -39.72029 -38.54100 -37.52906 -34.76180 -34.49270 -33.72038 -32.07286 -31.76565 -31.26387 -29.89241 -28.59904 -27.33773 -24.80541 -24.02058 -23.19834 -23.07858 -21.68195 -20.29223 -19.83275 -19.63536 -18.80110 -17.91733 -17.16873 -16.16879 -15.93092 -15.81144 -15.47407 -15.30256 -15.02089 -14.84164 -14.31958 -14.23452 -14.07301 -13.97363 -13.77576 -13.61819 -13.41438 -13.19311 -12.98419 -12.88594 -12.55765 -12.48890 -12.38399 -12.13749 -11.99419 -11.79765 -11.65050 -11.45025 -11.29431 -11.22861 -11.08727 -10.88740 -10.63565 -10.10382 -10.05170 -9.69254 -9.23794 -8.99683 -8.82301 -8.76061 -8.49470 -8.29703 -6.40373 -3.92930 0.96756 1.08918 2.60970 3.00468 3.05219 3.13214 3.29828 3.37089 3.58217 4.01221 4.04801 4.19070 4.33147 4.40388 4.50008 4.52247 4.61352 4.68520 4.75782 4.86687 4.92638 5.02397 5.04735 5.10373 5.14813 5.16835 5.27214 5.43883 5.46490 5.50855 5.52991 5.60413 5.67320 5.68168 5.71068 5.75869 5.78625 5.80936 5.85974 5.86783 6.08455 6.17995 6.28815 6.31749 6.65172 6.67747 7.11367 7.45468 8.00708 8.11012 8.44905 8.72065 8.82149 9.30410 9.64151 10.71796 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.037103 B = 0.001585 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.480896 B =17659.524676 C =17978.815088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.074 4.074 7 C -0.064 4.064 8 H 0.094 0.906 9 C -0.120 4.120 10 C 0.096 3.904 11 N -0.639 5.639 12 C 0.724 3.276 13 O -0.596 6.596 14 N -0.723 5.723 15 C 0.125 3.875 16 C 0.439 3.561 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.046 3.954 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C 0.137 3.863 28 C -0.109 4.109 29 C -0.115 4.115 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.375 0.625 45 H 0.275 0.725 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.123 0.877 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.038 -28.925 9.312 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.074 4.074 7 C -0.083 4.083 8 H 0.112 0.888 9 C -0.158 4.158 10 C -0.027 4.027 11 N -0.378 5.378 12 C 0.425 3.575 13 O -0.474 6.474 14 N -0.380 5.380 15 C -0.003 4.003 16 C 0.225 3.775 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.158 4.158 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C 0.014 3.986 28 C -0.127 4.127 29 C -0.133 4.133 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.246 0.754 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.208 0.792 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.141 0.859 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.850 -28.757 9.243 32.826 hybrid contribution 1.077 0.122 -0.067 1.086 sum -11.773 -28.636 9.176 32.293 Atomic orbital electron populations 1.21748 0.94691 1.01703 1.02264 1.20548 0.96209 0.92724 1.02840 1.19909 0.99172 0.96240 0.93255 1.20995 1.00120 0.94846 0.97516 1.21044 0.99376 0.94780 0.97517 1.19545 0.99747 0.94756 0.93358 1.21347 0.94740 0.91779 1.00452 0.88789 1.22737 0.97337 0.95724 0.99973 1.22057 0.81471 0.97325 1.01860 1.47456 1.04757 1.13513 1.72068 1.15321 0.82874 0.80976 0.78283 1.90906 1.25901 1.69714 1.60922 1.44761 1.10858 1.10844 1.71565 1.20816 0.86663 0.91118 1.01706 1.19648 0.86484 0.86418 0.84957 1.90531 1.18729 1.78587 1.58533 1.42113 1.07085 1.12429 1.59767 1.19441 0.97343 0.85203 1.41871 0.86093 1.25057 0.98662 0.95217 0.96906 1.69620 1.33993 1.04408 1.43346 0.86676 0.84697 0.79085 0.79072 1.19390 1.19986 1.19197 1.22076 0.96842 0.81686 0.98023 1.21020 0.99169 0.94745 0.97769 1.21008 0.99946 0.94842 0.97545 0.92561 0.92517 0.92425 0.91057 0.91093 0.86193 0.85973 0.90110 0.89627 0.91145 0.91091 0.75405 0.89859 0.89857 0.79217 0.91399 0.90224 0.91498 0.85869 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.33 16 2 C -0.09 -0.45 6.06 -27.88 -0.17 -0.62 16 3 C -0.09 -0.60 5.13 -104.62 -0.54 -1.14 16 4 C -0.12 -0.82 9.70 -39.59 -0.38 -1.21 16 5 C -0.11 -0.81 9.69 -39.59 -0.38 -1.19 16 6 C -0.07 -0.58 5.00 -104.62 -0.52 -1.10 16 7 C -0.06 -0.51 3.26 -89.62 -0.29 -0.80 16 8 H 0.09 0.72 7.96 -51.93 -0.41 0.31 16 9 C -0.12 -0.88 6.35 -24.89 -0.16 -1.04 16 10 C 0.10 0.95 6.15 -3.06 -0.02 0.93 16 11 N -0.64 -8.22 3.33 -176.23 -0.59 -8.81 16 12 C 0.72 12.10 8.49 -86.91 -0.74 11.37 16 13 O -0.60 -11.80 16.60 5.29 0.09 -11.71 16 14 N -0.72 -12.26 5.49 -66.42 -0.36 -12.63 16 15 C 0.13 2.26 6.15 -5.20 -0.03 2.22 16 16 C 0.44 9.76 7.85 -10.99 -0.09 9.68 16 17 O -0.58 -14.70 15.24 5.54 0.08 -14.62 16 18 N -0.58 -13.49 5.09 -10.96 -0.06 -13.55 16 19 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 20 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 21 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 22 N -0.87 -25.00 13.96 55.50 0.77 -24.22 16 23 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C 0.14 1.47 6.33 -2.53 -0.02 1.46 16 28 C -0.11 -0.84 8.29 -39.58 -0.33 -1.17 16 29 C -0.12 -0.84 9.70 -39.58 -0.38 -1.22 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.74 7.99 -52.49 -0.42 0.32 16 37 H 0.08 0.55 6.75 -51.93 -0.35 0.20 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.41 6.81 6.42 -40.82 -0.26 6.55 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 45 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 47 H 0.07 0.70 7.08 -51.93 -0.37 0.33 16 48 H 0.12 0.86 7.01 -52.49 -0.37 0.50 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -33.54 402.01 -10.10 -43.64 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.46 Total: 13.21 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -3.93 Total: 8.25 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.23 Total: -59.20 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: 0.17 Total: -26.33 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.54 -10.10 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458775708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.833 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds