Wall clock time and date at job start Wed Apr 1 2020 04:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46944 * 2 1 4 4 C 1.38235 * 120.00292 * 89.99931 * 3 2 1 5 5 C 1.38230 * 119.99899 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00326 * 359.95697 * 5 4 3 7 7 C 1.50702 * 120.00236 * 179.72466 * 6 5 4 8 8 H 1.08993 * 110.88455 * 357.56791 * 7 6 5 9 9 C 1.55162 * 110.99999 * 233.65022 * 7 6 5 10 10 C 1.54327 * 102.93973 * 206.41990 * 9 7 6 11 11 N 1.47029 * 107.26957 * 22.19624 * 10 9 7 12 12 C 1.34778 * 125.64815 * 181.09188 * 11 10 9 13 13 O 1.21582 * 120.00009 * 179.97438 * 12 11 10 14 14 N 1.34779 * 119.99868 * 359.96323 * 12 11 10 15 15 C 1.46495 * 119.99967 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47179 * 179.97438 * 15 14 12 17 17 O 1.21295 * 120.00210 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00237 * 179.97438 * 16 15 14 19 19 C 1.37102 * 120.00118 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99877 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99770 * 180.02562 * 19 18 16 22 22 N 1.31419 * 120.00026 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00229 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47182 * 90.00374 * 23 21 19 25 25 H 1.48503 * 109.47329 * 210.00423 * 23 21 19 26 26 H 1.48503 * 109.47080 * 330.00598 * 23 21 19 27 27 C 1.47419 * 108.70394 * 1.05665 * 11 10 9 28 28 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 29 29 C 1.38234 * 119.99503 * 269.97223 * 3 2 1 30 30 H 1.09003 * 109.47369 * 300.00773 * 1 2 3 31 31 H 1.09000 * 109.47013 * 59.99897 * 1 2 3 32 32 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47214 * 239.99646 * 2 1 3 34 34 H 1.08996 * 109.46710 * 119.99413 * 2 1 3 35 35 H 1.08001 * 119.99730 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.00376 * 179.97438 * 5 4 3 37 37 H 1.08998 * 110.72285 * 324.77994 * 9 7 6 38 38 H 1.08995 * 110.71959 * 88.06058 * 9 7 6 39 39 H 1.08999 * 109.88520 * 262.77612 * 10 9 7 40 40 H 1.08999 * 110.01059 * 141.67990 * 10 9 7 41 41 H 0.97006 * 119.99897 * 359.97438 * 14 12 11 42 42 H 1.09004 * 109.47289 * 299.99689 * 15 14 12 43 43 H 1.09005 * 109.47043 * 59.99440 * 15 14 12 44 44 H 0.96998 * 119.99718 * 0.02562 * 18 16 15 45 45 H 0.96996 * 119.99796 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.37043 * 217.03646 * 27 11 10 47 47 H 1.08997 * 110.37170 * 94.71127 * 27 11 10 48 48 H 1.08001 * 120.00299 * 179.97438 * 28 6 5 49 49 H 1.07997 * 120.00455 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9556 4.0268 -0.0001 7 6 3.4526 5.4495 -0.0002 8 1 3.5366 5.8318 1.0170 9 6 2.5372 6.3582 -0.8628 10 6 3.4903 7.4885 -1.3052 11 7 4.8614 6.9669 -1.2065 12 6 5.9858 7.6556 -1.4856 13 8 7.0714 7.1208 -1.3676 14 7 5.9069 8.9370 -1.8957 15 6 7.1290 9.6858 -2.1986 16 6 6.7676 11.0829 -2.6327 17 8 5.6036 11.4202 -2.6836 18 7 7.7378 11.9580 -2.9634 19 6 7.4090 13.2293 -3.3578 20 1 6.3726 13.5293 -3.4039 21 6 8.4093 14.1313 -3.6992 22 7 8.0941 15.3496 -4.0778 23 14 10.2020 13.6121 -3.6202 24 1 10.6111 13.0441 -4.9298 25 1 11.0461 14.7933 -3.3075 26 1 10.3739 12.5862 -2.5603 27 6 4.8027 5.5661 -0.7507 28 6 2.7266 3.3746 -1.1972 29 6 2.2632 2.0722 -1.1972 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8900 35 1 2.0823 1.5636 2.1324 36 1 2.9035 3.8850 2.1323 37 1 2.1574 5.8136 -1.7272 38 1 1.7170 6.7570 -0.2660 39 1 3.3733 8.3504 -0.6484 40 1 3.2762 7.7753 -2.3347 41 1 5.0407 9.3635 -1.9904 42 1 7.7566 9.7324 -1.3085 43 1 7.6723 9.1856 -3.0003 44 1 8.6687 11.6885 -2.9223 45 1 8.7924 15.9794 -4.3158 46 1 5.6315 5.3516 -0.0760 47 1 4.8221 4.8884 -1.6041 48 1 2.9072 3.8834 -2.1326 49 1 2.0832 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458775708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:48 Heat of formation + Delta-G solvation = -66.735793 kcal Electronic energy + Delta-G solvation = -28729.993384 eV Core-core repulsion = 24655.564202 eV Total energy + Delta-G solvation = -4074.429183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59946 -40.67067 -40.11790 -38.53696 -36.29833 -35.47045 -35.21230 -33.84020 -32.81863 -31.78647 -30.61111 -29.73558 -28.46325 -26.33807 -24.96285 -23.98994 -23.70121 -22.25189 -21.49040 -21.06864 -20.88493 -20.55166 -19.28410 -17.92333 -17.53983 -17.11968 -16.91619 -16.73309 -16.48737 -16.15496 -15.91361 -15.68182 -15.33470 -14.94559 -14.66048 -14.55033 -14.43216 -14.34363 -14.32677 -14.15820 -14.04720 -13.90449 -13.72212 -13.40938 -13.10450 -12.98262 -12.93953 -12.44873 -12.35368 -12.19167 -12.07024 -12.00260 -11.76352 -11.60496 -11.58558 -11.49408 -11.43015 -10.66622 -10.37306 -10.29897 -9.77986 -9.58265 -9.35588 -8.45742 -6.07759 0.41895 0.55299 1.31160 1.34103 1.42163 1.46320 1.77476 2.03076 2.20375 2.68483 2.81389 3.04488 3.10608 3.51831 3.72325 3.74532 3.94127 3.98612 4.02052 4.18334 4.20622 4.24849 4.32864 4.37215 4.41611 4.43389 4.54264 4.61385 4.63897 4.73186 4.73787 4.81933 4.87814 5.00142 5.09324 5.11379 5.15242 5.17587 5.25056 5.26062 5.29410 5.40578 5.48910 5.57569 5.75196 5.78517 5.87364 5.95588 6.15896 6.48396 6.77372 6.85232 7.27221 7.43053 7.77134 8.70595 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.037103 B = 0.001585 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.480896 B =17659.524676 C =17978.815088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.116 4.116 6 C -0.082 4.082 7 C -0.051 4.051 8 H 0.099 0.901 9 C -0.110 4.110 10 C 0.090 3.910 11 N -0.636 5.636 12 C 0.721 3.279 13 O -0.629 6.629 14 N -0.725 5.725 15 C 0.137 3.863 16 C 0.446 3.554 17 O -0.614 6.614 18 N -0.577 5.577 19 C -0.332 4.332 20 H 0.064 0.936 21 C -0.006 4.006 22 N -0.925 5.925 23 Si 0.958 3.042 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.233 1.233 27 C 0.133 3.867 28 C -0.117 4.117 29 C -0.126 4.126 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.409 0.591 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.392 0.608 45 H 0.281 0.719 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.127 0.873 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 -31.411 10.195 35.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.143 4.143 5 C -0.134 4.134 6 C -0.083 4.083 7 C -0.070 4.070 8 H 0.118 0.882 9 C -0.147 4.147 10 C -0.032 4.032 11 N -0.373 5.373 12 C 0.422 3.578 13 O -0.511 6.511 14 N -0.383 5.383 15 C 0.009 3.991 16 C 0.234 3.766 17 O -0.500 6.500 18 N -0.217 5.217 19 C -0.461 4.461 20 H 0.082 0.918 21 C -0.206 4.206 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.157 1.157 27 C 0.011 3.989 28 C -0.135 4.135 29 C -0.144 4.144 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.247 0.753 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.228 0.772 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.145 0.855 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.198 -31.280 10.141 35.072 hybrid contribution 0.690 0.846 -0.334 1.141 sum -11.508 -30.434 9.806 33.983 Atomic orbital electron populations 1.21728 0.94313 1.02268 1.01880 1.20584 0.96464 0.91784 1.03432 1.20175 0.98687 0.97067 0.93195 1.21239 0.99928 0.94891 0.98252 1.21251 0.99200 0.95091 0.97879 1.19531 1.00477 0.94580 0.93699 1.21232 0.93079 0.92304 1.00366 0.88246 1.22732 0.96964 0.94608 1.00420 1.22269 0.80366 0.98401 1.02167 1.47530 1.04945 1.14140 1.70701 1.15414 0.83405 0.80726 0.78215 1.90874 1.27465 1.70289 1.62457 1.44726 1.10512 1.11108 1.71924 1.20715 0.87373 0.88063 1.02956 1.20441 0.85696 0.87693 0.82801 1.90519 1.20435 1.79702 1.59310 1.41909 1.08253 1.11165 1.60329 1.19038 0.95363 0.87605 1.44084 0.91773 1.26036 1.04412 0.94649 0.95476 1.69779 1.36262 1.06055 1.44367 0.85463 0.76660 0.79586 0.80537 1.18099 1.19772 1.15669 1.22221 0.98065 0.80474 0.98165 1.21141 0.99340 0.95102 0.97940 1.21219 0.99995 0.94894 0.98282 0.92837 0.92988 0.91409 0.90598 0.90396 0.84766 0.84837 0.89282 0.87792 0.91004 0.90987 0.75323 0.88065 0.88006 0.77214 0.90909 0.91614 0.91268 0.85539 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.89 71.98 0.71 -0.43 16 2 C -0.09 -0.75 6.06 29.85 0.18 -0.57 16 3 C -0.09 -1.14 5.13 -19.87 -0.10 -1.24 16 4 C -0.13 -1.56 9.70 22.27 0.22 -1.34 16 5 C -0.12 -1.53 9.69 22.27 0.22 -1.32 16 6 C -0.08 -1.17 5.00 -19.87 -0.10 -1.27 16 7 C -0.05 -0.73 3.26 -10.15 -0.03 -0.76 16 8 H 0.10 1.35 7.96 -2.39 -0.02 1.33 16 9 C -0.11 -1.40 6.35 31.79 0.20 -1.20 16 10 C 0.09 1.67 6.15 86.73 0.53 2.20 16 11 N -0.64 -15.77 3.33 -829.75 -2.76 -18.53 16 12 C 0.72 23.47 8.49 179.05 1.52 24.99 16 13 O -0.63 -24.36 16.60 -3.98 -0.07 -24.43 16 14 N -0.72 -23.94 5.49 -482.31 -2.65 -26.59 16 15 C 0.14 4.71 6.15 85.63 0.53 5.24 16 16 C 0.45 19.73 7.85 87.65 0.69 20.42 16 17 O -0.61 -31.82 15.24 -3.08 -0.05 -31.87 16 18 N -0.58 -26.72 5.09 -306.98 -1.56 -28.28 16 19 C -0.33 -18.89 10.16 84.04 0.85 -18.03 16 20 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 21 C -0.01 -0.30 5.50 84.92 0.47 0.16 16 22 N -0.92 -54.30 13.96 21.66 0.30 -53.99 16 23 Si 0.96 38.24 27.74 68.60 1.90 40.14 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 27 C 0.13 2.75 6.33 86.86 0.55 3.30 16 28 C -0.12 -1.65 8.29 22.27 0.18 -1.47 16 29 C -0.13 -1.67 9.70 22.27 0.22 -1.45 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 34 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 35 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.13 1.37 7.99 -2.91 -0.02 1.35 16 37 H 0.09 1.02 6.75 -2.39 -0.02 1.01 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.41 13.48 6.42 -92.70 -0.60 12.88 16 42 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 43 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 44 H 0.39 15.30 5.76 -92.71 -0.53 14.76 16 45 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.07 1.54 8.04 -2.38 -0.02 1.52 16 47 H 0.07 1.40 7.08 -2.39 -0.02 1.38 16 48 H 0.13 1.62 7.01 -2.91 -0.02 1.60 16 49 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -75.29 402.01 1.74 -73.55 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.21 Total: 42.76 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 6.83 Total: 27.24 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -6.67 Total: -127.40 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -0.11 Total: -56.30 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -75.29 1.74 -73.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458775708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.816 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds